Wall clock time and date at job start Tue Mar 31 2020 15:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34728 * 117.00161 * 2 1 4 4 O 1.21482 * 119.99907 * 0.02562 * 3 2 1 5 5 C 1.47639 * 119.99832 * 180.02562 * 3 2 1 6 6 C 1.39682 * 120.16318 * 0.02562 * 5 3 2 7 7 C 1.37883 * 119.85717 * 179.97438 * 6 5 3 8 8 C 1.38428 * 120.19216 * 0.02674 * 7 6 5 9 9 C 1.38281 * 120.32926 * 359.66748 * 8 7 6 10 10 C 1.50697 * 119.93514 * 180.30563 * 9 8 7 11 11 S 1.81403 * 109.47122 * 270.30414 * 10 9 8 12 12 C 1.81394 * 102.99878 * 180.02562 * 11 10 9 13 13 C 1.53010 * 109.47199 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.46986 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46776 * 180.02562 * 14 13 12 16 16 H 1.07992 * 119.99987 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00039 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99669 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00187 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47026 * 89.99606 * 19 17 15 21 21 H 1.48496 * 109.47334 * 209.99502 * 19 17 15 22 22 H 1.48500 * 109.47159 * 329.99809 * 19 17 15 23 23 C 1.38146 * 120.13110 * 0.61375 * 9 8 7 24 24 Cl 1.73599 * 120.09701 * 179.69581 * 23 9 8 25 25 H 1.09005 * 109.46956 * 299.99928 * 1 2 3 26 26 H 1.09004 * 109.47342 * 59.99706 * 1 2 3 27 27 H 1.09003 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.06926 * 359.95875 * 6 5 3 29 29 H 1.08007 * 119.90490 * 179.97438 * 7 6 5 30 30 H 1.08000 * 119.83964 * 180.02562 * 8 7 6 31 31 H 1.09000 * 109.47085 * 30.30159 * 10 9 8 32 32 H 1.09001 * 109.46835 * 150.30375 * 10 9 8 33 33 H 1.09008 * 109.47153 * 299.99687 * 12 11 10 34 34 H 1.08997 * 109.47565 * 60.00019 * 12 11 10 35 35 H 1.08997 * 109.46445 * 300.00182 * 13 12 11 36 36 H 1.08997 * 109.46783 * 59.99618 * 13 12 11 37 37 H 1.09001 * 109.47232 * 300.00087 * 14 13 12 38 38 H 1.08999 * 109.46836 * 60.00460 * 14 13 12 39 39 H 0.97000 * 119.99447 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2193 0.0005 5 6 3.5380 1.2776 -0.0006 6 6 4.3020 0.1083 -0.0017 7 6 5.6786 0.1877 -0.0027 8 6 6.3046 1.4223 -0.0022 9 6 5.5559 2.5849 -0.0075 10 6 6.2467 3.9242 -0.0138 11 16 6.5322 4.4654 1.6940 12 6 7.3567 6.0671 1.4819 13 6 7.6696 6.6654 2.8550 14 6 8.3657 8.0161 2.6761 15 6 8.6744 8.6051 4.0286 16 1 8.4011 8.0697 4.9258 17 6 9.3048 9.8278 4.1204 18 7 9.6371 10.4799 3.0277 19 14 9.6881 10.5575 5.7966 20 1 11.0343 10.1095 6.2354 21 1 9.6640 12.0396 5.7086 22 1 8.6709 10.1033 6.7786 23 6 4.1760 2.5211 -0.0006 24 17 3.2370 3.9812 0.0008 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.8156 -0.8559 -0.0014 29 1 6.2701 -0.7160 -0.0031 30 1 7.3832 1.4779 -0.0034 31 1 7.2018 3.8380 -0.5320 32 1 5.6198 4.6539 -0.5262 33 1 8.2840 5.9277 0.9261 34 1 6.7018 6.7431 0.9323 35 1 6.7422 6.8048 3.4104 36 1 8.3244 5.9896 3.4051 37 1 9.2931 7.8762 2.1208 38 1 7.7111 8.6920 2.1259 39 1 10.0810 11.3400 3.0923 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419516552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:23 Heat of formation + Delta-G solvation = -78.385716 kcal Electronic energy + Delta-G solvation = -21728.842343 eV Core-core repulsion = 18174.377166 eV Total energy + Delta-G solvation = -3554.465177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.91330 -39.43215 -36.83493 -36.47331 -34.45319 -33.49140 -32.02019 -31.52360 -28.35005 -27.69217 -27.14429 -24.54390 -23.43336 -22.30021 -21.21570 -20.22499 -18.14336 -17.49885 -16.70600 -16.69076 -16.45790 -16.02940 -15.80219 -15.06586 -14.64567 -14.59829 -14.39296 -14.16767 -13.79329 -13.52236 -13.15117 -12.87729 -12.56940 -12.49342 -12.26055 -12.06645 -11.77753 -11.69721 -11.64435 -11.41072 -11.13214 -10.92123 -10.87359 -10.55315 -10.16530 -9.95413 -9.79112 -9.39314 -9.29940 -9.13046 -8.95046 -8.36567 -7.44967 -6.01647 -4.04030 0.18393 0.58894 1.84008 1.87609 2.25714 2.29653 2.81998 3.28776 3.32265 3.38379 3.42556 4.10563 4.23712 4.37895 4.45675 4.68061 4.71163 4.76707 4.83723 4.94387 5.04275 5.15905 5.24428 5.34317 5.47474 5.50575 5.58133 5.63433 5.76318 5.89642 5.98069 6.12380 6.21110 6.55404 6.71665 7.01861 7.39729 7.63443 7.75580 7.97359 8.39212 9.02373 9.60139 11.09661 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.024014 B = 0.002166 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.697528 B =12924.833324 C =13461.346989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.357 6.357 3 C 0.503 3.497 4 O -0.480 6.480 5 C -0.124 4.124 6 C -0.051 4.051 7 C -0.129 4.129 8 C -0.054 4.054 9 C -0.070 4.070 10 C -0.060 4.060 11 S -0.259 6.259 12 C -0.074 4.074 13 C -0.095 4.095 14 C 0.028 3.972 15 C -0.520 4.520 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.031 3.969 24 Cl -0.016 7.016 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.017 0.983 38 H 0.018 0.982 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.388 -25.627 -11.144 30.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.274 6.274 3 C 0.346 3.654 4 O -0.367 6.367 5 C -0.126 4.126 6 C -0.070 4.070 7 C -0.147 4.147 8 C -0.074 4.074 9 C -0.072 4.072 10 C -0.207 4.207 11 S -0.028 6.028 12 C -0.222 4.222 13 C -0.134 4.134 14 C -0.011 4.011 15 C -0.558 4.558 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C 0.002 3.998 24 Cl 0.014 6.986 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.121 0.879 28 H 0.164 0.836 29 H 0.158 0.842 30 H 0.161 0.839 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.900 -25.509 -10.266 30.811 hybrid contribution 0.308 1.300 -0.268 1.363 sum -13.592 -24.209 -10.534 29.695 Atomic orbital electron populations 1.23292 0.75667 1.03773 1.02848 1.86509 1.23752 1.32524 1.84622 1.20949 0.88739 0.81823 0.73848 1.90955 1.66494 1.35308 1.43978 1.18806 0.89964 0.93092 1.10762 1.21455 0.93879 0.97448 0.94229 1.21232 0.94279 0.98225 1.00991 1.21363 1.00918 0.90928 0.94192 1.19127 0.90723 0.95308 1.02010 1.22318 1.03514 0.95954 0.98908 1.87098 1.79310 1.27550 1.08873 1.23670 1.01325 0.93026 1.04215 1.21467 1.00977 0.99231 0.91689 1.19103 0.95243 0.89382 0.97394 1.21220 1.38180 1.03838 0.92605 0.92541 1.25027 0.95780 0.97054 0.96634 1.69967 1.41290 1.14917 1.27333 0.86566 0.78746 0.78209 0.84342 1.20633 1.21217 1.19818 1.20926 0.91629 0.88167 0.99069 1.98442 1.71526 1.33025 1.95592 0.91651 0.91728 0.87920 0.83587 0.84153 0.83939 0.88542 0.88532 0.90434 0.90428 0.92342 0.92379 0.96425 0.96409 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.21 9.82 -40.57 -0.40 -3.61 16 3 C 0.50 5.72 7.89 34.57 0.27 6.00 16 4 O -0.48 -6.63 13.76 -19.25 -0.26 -6.89 16 5 C -0.12 -1.33 5.88 -104.95 -0.62 -1.95 16 6 C -0.05 -0.40 9.62 -39.17 -0.38 -0.77 16 7 C -0.13 -0.88 10.03 -39.64 -0.40 -1.28 16 8 C -0.05 -0.45 9.69 -39.50 -0.38 -0.83 16 9 C -0.07 -0.76 5.14 -104.64 -0.54 -1.30 16 10 C -0.06 -0.70 5.67 36.00 0.20 -0.50 16 11 S -0.26 -3.95 21.72 -107.50 -2.33 -6.29 16 12 C -0.07 -1.27 5.94 37.16 0.22 -1.05 16 13 C -0.09 -1.97 5.16 -26.73 -0.14 -2.11 16 14 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 15 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 19 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.03 0.38 6.35 -39.05 -0.25 0.13 16 24 Cl -0.02 -0.22 24.36 -51.86 -1.26 -1.48 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.15 0.81 7.61 -52.49 -0.40 0.41 16 29 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 30 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 31 H 0.10 0.95 8.09 -51.92 -0.42 0.53 16 32 H 0.10 1.16 6.90 -51.92 -0.36 0.80 16 33 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -32.78 363.29 -9.92 -42.70 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: -5.37 Total: -5.12 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -1.48 Total: -15.39 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.74 Total: -26.18 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.66 Total: -10.50 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -3.95 SS G_CDS: -2.33 Total: -6.29 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.26 Total: -1.48 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.78 -9.92 -42.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419516552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.688 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds