Wall clock time and date at job start Tue Mar 31 2020 15:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34728 * 117.00161 * 2 1 4 4 O 1.21482 * 119.99907 * 0.02562 * 3 2 1 5 5 C 1.47639 * 119.99832 * 180.02562 * 3 2 1 6 6 C 1.39682 * 120.16318 * 0.02562 * 5 3 2 7 7 C 1.37883 * 119.85717 * 179.97438 * 6 5 3 8 8 C 1.38428 * 120.19216 * 0.02674 * 7 6 5 9 9 C 1.38281 * 120.32926 * 359.66748 * 8 7 6 10 10 C 1.50697 * 119.93514 * 180.30563 * 9 8 7 11 11 S 1.81403 * 109.47122 * 270.30414 * 10 9 8 12 12 C 1.81394 * 102.99878 * 180.02562 * 11 10 9 13 13 C 1.53010 * 109.47199 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.46986 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46776 * 180.02562 * 14 13 12 16 16 H 1.07992 * 119.99987 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00039 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99669 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00187 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47026 * 89.99606 * 19 17 15 21 21 H 1.48496 * 109.47334 * 209.99502 * 19 17 15 22 22 H 1.48500 * 109.47159 * 329.99809 * 19 17 15 23 23 C 1.38146 * 120.13110 * 0.61375 * 9 8 7 24 24 Cl 1.73599 * 120.09701 * 179.69581 * 23 9 8 25 25 H 1.09005 * 109.46956 * 299.99928 * 1 2 3 26 26 H 1.09004 * 109.47342 * 59.99706 * 1 2 3 27 27 H 1.09003 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.06926 * 359.95875 * 6 5 3 29 29 H 1.08007 * 119.90490 * 179.97438 * 7 6 5 30 30 H 1.08000 * 119.83964 * 180.02562 * 8 7 6 31 31 H 1.09000 * 109.47085 * 30.30159 * 10 9 8 32 32 H 1.09001 * 109.46835 * 150.30375 * 10 9 8 33 33 H 1.09008 * 109.47153 * 299.99687 * 12 11 10 34 34 H 1.08997 * 109.47565 * 60.00019 * 12 11 10 35 35 H 1.08997 * 109.46445 * 300.00182 * 13 12 11 36 36 H 1.08997 * 109.46783 * 59.99618 * 13 12 11 37 37 H 1.09001 * 109.47232 * 300.00087 * 14 13 12 38 38 H 1.08999 * 109.46836 * 60.00460 * 14 13 12 39 39 H 0.97000 * 119.99447 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2193 0.0005 5 6 3.5380 1.2776 -0.0006 6 6 4.3020 0.1083 -0.0017 7 6 5.6786 0.1877 -0.0027 8 6 6.3046 1.4223 -0.0022 9 6 5.5559 2.5849 -0.0075 10 6 6.2467 3.9242 -0.0138 11 16 6.5322 4.4654 1.6940 12 6 7.3567 6.0671 1.4819 13 6 7.6696 6.6654 2.8550 14 6 8.3657 8.0161 2.6761 15 6 8.6744 8.6051 4.0286 16 1 8.4011 8.0697 4.9258 17 6 9.3048 9.8278 4.1204 18 7 9.6371 10.4799 3.0277 19 14 9.6881 10.5575 5.7966 20 1 11.0343 10.1095 6.2354 21 1 9.6640 12.0396 5.7086 22 1 8.6709 10.1033 6.7786 23 6 4.1760 2.5211 -0.0006 24 17 3.2370 3.9812 0.0008 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.8156 -0.8559 -0.0014 29 1 6.2701 -0.7160 -0.0031 30 1 7.3832 1.4779 -0.0034 31 1 7.2018 3.8380 -0.5320 32 1 5.6198 4.6539 -0.5262 33 1 8.2840 5.9277 0.9261 34 1 6.7018 6.7431 0.9323 35 1 6.7422 6.8048 3.4104 36 1 8.3244 5.9896 3.4051 37 1 9.2931 7.8762 2.1208 38 1 7.7111 8.6920 2.1259 39 1 10.0810 11.3400 3.0923 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419516552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:22 Heat of formation + Delta-G solvation = -94.831609 kcal Electronic energy + Delta-G solvation = -21729.555490 eV Core-core repulsion = 18174.377166 eV Total energy + Delta-G solvation = -3555.178324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.68130 -40.15394 -37.65780 -37.33150 -36.36723 -34.26321 -34.04889 -32.21732 -29.49818 -28.93731 -28.08937 -25.37922 -25.22501 -23.07331 -22.19821 -21.79347 -18.94374 -18.52972 -18.25180 -17.45297 -17.38390 -17.06340 -16.80144 -16.56255 -16.16801 -15.77458 -15.38521 -14.93271 -14.61315 -14.48803 -14.39718 -14.15678 -13.91676 -13.50187 -13.43745 -13.15353 -12.89273 -12.77880 -12.74087 -12.69359 -12.56570 -12.38968 -12.21727 -11.81606 -11.66143 -11.50373 -11.24245 -11.09117 -10.88570 -10.56991 -10.11497 -9.78350 -8.65818 -8.21960 -6.32885 -0.54075 -0.20391 0.83826 1.02262 1.39550 1.40908 1.41767 1.52291 1.59288 1.64613 2.40314 2.58332 3.11273 3.32893 3.53672 3.71356 3.98515 4.03869 4.08961 4.10483 4.25126 4.30992 4.33464 4.34466 4.50745 4.58810 4.68203 4.73599 4.81475 4.96500 4.96975 5.12708 5.12941 5.24059 5.26781 5.48090 5.62117 5.67524 5.81385 6.21591 6.61401 6.82597 7.36142 8.89684 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.024014 B = 0.002166 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.697528 B =12924.833324 C =13461.346989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.353 6.353 3 C 0.501 3.499 4 O -0.515 6.515 5 C -0.144 4.144 6 C -0.038 4.038 7 C -0.115 4.115 8 C -0.049 4.049 9 C -0.087 4.087 10 C -0.047 4.047 11 S -0.275 6.275 12 C -0.069 4.069 13 C -0.080 4.080 14 C 0.031 3.969 15 C -0.545 4.545 16 H 0.058 0.942 17 C 0.000 4.000 18 N -0.931 5.931 19 Si 0.965 3.035 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.266 1.266 23 C 0.012 3.988 24 Cl -0.047 7.047 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.138 0.862 28 H 0.173 0.827 29 H 0.181 0.819 30 H 0.166 0.834 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.000 1.000 38 H -0.006 1.006 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.762 -28.594 -10.885 33.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.269 6.269 3 C 0.346 3.654 4 O -0.405 6.405 5 C -0.146 4.146 6 C -0.057 4.057 7 C -0.132 4.132 8 C -0.069 4.069 9 C -0.089 4.089 10 C -0.194 4.194 11 S -0.045 6.045 12 C -0.217 4.217 13 C -0.119 4.119 14 C -0.008 4.008 15 C -0.583 4.583 16 H 0.076 0.924 17 C -0.198 4.198 18 N -0.571 5.571 19 Si 0.790 3.210 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.190 1.190 23 C -0.017 4.017 24 Cl -0.017 7.017 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.156 0.844 28 H 0.190 0.810 29 H 0.199 0.801 30 H 0.184 0.816 31 H 0.138 0.862 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.018 0.982 38 H 0.012 0.988 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.273 -28.496 -10.002 32.989 hybrid contribution 0.066 2.034 -0.427 2.079 sum -13.207 -26.463 -10.429 31.360 Atomic orbital electron populations 1.23583 0.74181 1.05977 1.02479 1.86498 1.25192 1.31175 1.84041 1.21211 0.89204 0.81969 0.73015 1.90937 1.67272 1.36495 1.45771 1.18985 0.89918 0.93678 1.12015 1.21835 0.94385 0.97334 0.92169 1.21695 0.94012 0.99048 0.98487 1.21733 1.02016 0.90522 0.92615 1.19157 0.90331 0.95648 1.03791 1.22343 1.04730 0.96456 0.95874 1.87060 1.78956 1.25724 1.12772 1.23375 1.02133 0.94483 1.01724 1.21160 0.99899 0.96884 0.93971 1.18978 0.94344 0.91588 0.95861 1.21660 1.38415 1.04492 0.93725 0.92370 1.25970 0.95472 0.97513 1.00833 1.70089 1.41932 1.15393 1.29707 0.85443 0.78934 0.77361 0.79304 1.19532 1.20639 1.19003 1.21121 0.92025 0.87647 1.00928 1.98423 1.72427 1.34916 1.95950 0.92256 0.91975 0.84373 0.80973 0.80121 0.81645 0.86242 0.89223 0.89471 0.90698 0.93123 0.92331 0.98207 0.98751 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.54 16 2 O -0.35 -5.85 9.82 -56.38 -0.55 -6.40 16 3 C 0.50 11.25 7.89 70.30 0.55 11.80 16 4 O -0.52 -14.70 13.76 19.89 0.27 -14.43 16 5 C -0.14 -2.92 5.88 -20.08 -0.12 -3.03 16 6 C -0.04 -0.47 9.62 22.53 0.22 -0.25 16 7 C -0.11 -1.04 10.03 22.23 0.22 -0.82 16 8 C -0.05 -0.65 9.69 22.33 0.22 -0.43 16 9 C -0.09 -1.76 5.14 -19.88 -0.10 -1.87 16 10 C -0.05 -1.05 5.67 71.23 0.40 -0.65 16 11 S -0.28 -8.28 21.72 -56.49 -1.23 -9.50 16 12 C -0.07 -2.38 5.94 71.99 0.43 -1.95 16 13 C -0.08 -3.42 5.16 30.60 0.16 -3.27 16 14 C 0.03 1.66 4.97 29.85 0.15 1.80 16 15 C -0.54 -31.59 9.11 25.60 0.23 -31.35 16 16 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 17 C 0.00 0.00 5.46 84.65 0.46 0.46 16 18 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 19 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 C 0.01 0.29 6.35 22.62 0.14 0.43 16 24 Cl -0.05 -1.34 24.36 -2.72 -0.07 -1.40 16 25 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.17 1.16 7.61 -2.91 -0.02 1.14 16 29 H 0.18 0.26 8.06 -2.91 -0.02 0.23 16 30 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 31 H 0.12 2.10 8.09 -2.39 -0.02 2.08 16 32 H 0.09 2.15 6.90 -2.39 -0.02 2.13 16 33 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.00 -0.03 8.14 -2.39 -0.02 -0.04 16 38 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -73.45 363.29 5.95 -67.50 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: 1.05 Total: 1.56 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 4.16 Total: -27.58 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.28 Total: -56.62 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.28 Total: -20.83 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.23 Total: -9.50 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.07 Total: -1.40 kcal Total: -73.45 5.95 -67.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419516552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.328 kcal (2) G-P(sol) polarization free energy of solvation -73.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds