Wall clock time and date at job start Tue Mar 31 2020 15:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86807 * 119.99801 * 2 1 4 4 H 1.48501 * 109.46869 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46809 * 300.00064 * 3 2 1 6 6 H 1.48506 * 109.47039 * 60.00120 * 3 2 1 7 7 C 1.39868 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00407 * 197.97854 * 7 2 1 9 9 C 1.41137 * 119.99750 * 17.97818 * 7 2 1 10 10 C 1.40886 * 120.15606 * 204.88107 * 9 7 2 11 11 C 1.36338 * 119.83460 * 180.25190 * 10 9 7 12 12 C 1.39562 * 120.16376 * 359.49783 * 11 10 9 13 13 N 1.38857 * 119.84458 * 180.25516 * 12 11 10 14 14 C 1.46494 * 120.00003 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46865 * 179.97438 * 14 13 12 16 16 N 1.27900 * 124.23246 * 89.70413 * 15 14 13 17 17 C 1.34719 * 117.83944 * 179.76806 * 16 15 14 18 18 C 1.40965 * 129.65615 * 180.22700 * 17 16 15 19 19 C 1.36163 * 120.46237 * 180.28198 * 18 17 16 20 20 C 1.38987 * 120.75024 * 0.02562 * 19 18 17 21 21 F 1.35102 * 119.98934 * 179.97438 * 20 19 18 22 22 C 1.37840 * 120.01441 * 0.02562 * 20 19 18 23 23 C 1.39344 * 119.93655 * 359.97438 * 22 20 19 24 24 S 1.70643 * 124.23513 * 270.00045 * 15 14 13 25 25 C 1.39570 * 120.31287 * 0.23439 * 12 11 10 26 26 C 1.36337 * 120.16226 * 0.02562 * 25 12 11 27 27 H 0.96992 * 120.00260 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.07910 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.91194 * 179.77566 * 11 10 9 30 30 H 0.97006 * 119.99303 * 0.02562 * 13 12 11 31 31 H 1.09000 * 109.47332 * 299.99769 * 14 13 12 32 32 H 1.09006 * 109.47128 * 60.00205 * 14 13 12 33 33 H 1.08007 * 119.77093 * 0.26741 * 18 17 16 34 34 H 1.08002 * 119.62285 * 180.02562 * 19 18 17 35 35 H 1.08004 * 120.03629 * 180.02562 * 22 20 19 36 36 H 1.08005 * 119.91593 * 180.02562 * 25 12 11 37 37 H 1.08002 * 120.07934 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.7030 1.3465 0.0006 5 1 1.8842 2.3964 -1.2125 6 1 1.8842 2.3965 1.2126 7 6 2.0085 -1.2113 0.0005 8 1 3.0489 -1.2340 0.2892 9 6 1.3545 -2.4039 -0.3762 10 6 1.8232 -3.6468 0.0932 11 6 1.1896 -4.7952 -0.2790 12 6 0.0729 -4.7408 -1.1144 13 7 -0.5705 -5.9142 -1.4850 14 6 -1.7433 -5.8611 -2.3613 15 6 -2.2485 -7.2590 -2.6095 16 7 -3.1148 -7.8514 -1.8784 17 6 -3.4785 -9.1021 -2.2221 18 6 -4.4011 -9.9721 -1.6063 19 6 -4.6235 -11.2152 -2.1155 20 6 -3.9471 -11.6504 -3.2490 21 9 -4.1793 -12.8871 -3.7408 22 6 -3.0387 -10.8208 -3.8708 23 6 -2.7997 -9.5457 -3.3622 24 16 -1.7312 -8.2523 -3.8970 25 6 -0.4004 -3.5127 -1.5787 26 6 0.2265 -2.3566 -1.2189 27 1 -0.4850 0.8400 0.0004 28 1 2.6846 -3.6900 0.7433 29 1 1.5501 -5.7489 0.0772 30 1 -0.2438 -6.7689 -1.1630 31 1 -2.5261 -5.2706 -1.8853 32 1 -1.4673 -5.4010 -3.3102 33 1 -4.9350 -9.6504 -0.7243 34 1 -5.3337 -11.8704 -1.6330 35 1 -2.5132 -11.1585 -4.7519 36 1 -1.2653 -3.4780 -2.2246 37 1 -0.1412 -1.4069 -1.5787 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428867227.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:01 Heat of formation + Delta-G solvation = 39.178078 kcal Electronic energy + Delta-G solvation = -22796.993946 eV Core-core repulsion = 19158.892014 eV Total energy + Delta-G solvation = -3638.101933 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.074 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.36456 -40.69270 -38.15701 -37.19174 -35.05474 -33.08049 -31.73218 -30.50378 -29.50574 -28.70664 -26.84774 -24.61533 -24.00704 -22.99799 -21.63631 -20.82253 -20.00403 -18.97608 -17.91735 -17.24256 -17.04811 -16.38984 -16.12899 -15.83663 -15.36880 -14.95795 -14.54355 -14.52861 -14.14682 -13.99726 -13.81076 -13.28342 -13.16629 -12.72357 -12.65469 -12.50227 -11.97397 -11.83055 -11.68415 -11.30135 -11.22767 -11.06084 -10.83821 -10.60357 -10.50950 -9.90759 -9.73008 -9.34638 -9.29425 -8.95191 -8.62531 -8.50941 -7.53622 -6.68265 -6.46739 -4.07408 -0.07748 0.56744 0.85177 1.39713 1.82532 2.87452 3.06662 3.12607 3.14376 3.19669 3.30983 3.49454 3.74789 4.03628 4.09801 4.30496 4.44042 4.66287 4.70481 4.73187 4.97657 5.30582 5.38511 5.53431 5.63136 5.68430 5.76689 5.80795 6.20479 6.22232 6.26437 6.81165 6.89311 7.16095 7.29742 7.32298 7.47391 7.64557 7.77795 8.11757 8.21412 8.41097 8.57922 8.74231 9.02944 9.10651 10.34193 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.040668 B = 0.001997 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.335507 B =14018.504969 C =14088.422351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.465 4.465 8 H 0.074 0.926 9 C 0.077 3.923 10 C -0.187 4.187 11 C -0.152 4.152 12 C 0.088 3.912 13 N -0.754 5.754 14 C 0.210 3.790 15 C 0.091 3.909 16 N -0.450 5.450 17 C 0.074 3.926 18 C -0.030 4.030 19 C -0.140 4.140 20 C 0.114 3.886 21 F -0.132 7.132 22 C -0.106 4.106 23 C -0.169 4.169 24 S 0.139 5.861 25 C -0.162 4.162 26 C -0.125 4.125 27 H 0.276 0.724 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.387 0.613 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.089 0.911 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.547 -18.624 -7.865 21.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.496 4.496 8 H 0.092 0.908 9 C 0.074 3.926 10 C -0.207 4.207 11 C -0.174 4.174 12 C -0.008 4.008 13 N -0.392 5.392 14 C 0.082 3.918 15 C -0.194 4.194 16 N -0.163 5.163 17 C -0.048 4.048 18 C -0.051 4.051 19 C -0.162 4.162 20 C 0.091 3.909 21 F -0.110 7.110 22 C -0.130 4.130 23 C -0.289 4.289 24 S 0.396 5.604 25 C -0.183 4.183 26 C -0.145 4.145 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.220 0.780 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.107 0.893 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.353 -17.881 -8.323 21.419 hybrid contribution -0.296 -0.312 0.559 0.705 sum -8.649 -18.193 -7.764 21.588 Atomic orbital electron populations 1.69857 1.07374 1.28615 1.37403 1.25814 0.94667 1.00961 0.92678 0.86360 0.81001 0.81531 0.78343 1.18606 1.19931 1.20269 1.19410 0.97992 0.91325 1.40899 0.90832 1.17524 0.92347 0.92033 0.90732 1.20550 1.02879 0.92528 1.04763 1.19788 0.97683 0.97140 1.02762 1.17247 0.95897 0.85015 1.02645 1.43657 1.31806 1.06565 1.57215 1.19658 0.90162 0.85871 0.96142 1.27024 0.96161 1.01830 0.94419 1.66261 1.13751 1.07362 1.28963 1.19283 0.99892 0.91024 0.94557 1.20279 0.94748 0.91005 0.99057 1.20698 1.01966 0.97208 0.96306 1.17383 0.97955 0.80779 0.94788 1.91533 1.93350 1.39041 1.87101 1.20143 0.99723 0.91496 1.01624 1.23730 1.03676 1.00066 1.01404 1.84196 1.40845 1.04674 1.30694 1.20084 1.01453 0.91873 1.04924 1.20932 0.98195 0.96444 0.98950 0.91303 0.88931 0.89534 0.78045 0.89764 0.90668 0.83521 0.83421 0.83880 0.89325 0.86276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.10 10.96 55.54 0.61 -20.49 16 2 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 3 Si 0.90 18.99 29.60 -169.99 -5.03 13.95 16 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.47 -12.46 9.03 -37.87 -0.34 -12.80 16 8 H 0.07 1.91 7.91 -52.49 -0.41 1.49 16 9 C 0.08 2.03 5.57 -106.79 -0.60 1.44 16 10 C -0.19 -4.55 9.74 -39.26 -0.38 -4.93 16 11 C -0.15 -3.34 9.82 -39.77 -0.39 -3.73 16 12 C 0.09 1.86 6.67 -83.69 -0.56 1.30 16 13 N -0.75 -12.80 5.69 -59.67 -0.34 -13.14 16 14 C 0.21 3.05 5.44 -5.20 -0.03 3.02 16 15 C 0.09 1.19 6.65 -13.91 -0.09 1.10 16 16 N -0.45 -6.28 10.57 -9.09 -0.10 -6.37 16 17 C 0.07 0.89 7.00 -84.94 -0.59 0.30 16 18 C -0.03 -0.28 10.05 -39.30 -0.39 -0.68 16 19 C -0.14 -1.09 9.92 -40.05 -0.40 -1.49 16 20 C 0.11 1.00 7.30 -39.45 -0.29 0.71 16 21 F -0.13 -1.17 17.27 2.25 0.04 -1.13 16 22 C -0.11 -0.97 10.05 -39.32 -0.40 -1.37 16 23 C -0.17 -1.86 6.56 -38.55 -0.25 -2.11 16 24 S 0.14 1.50 23.11 -107.50 -2.48 -0.98 16 25 C -0.16 -3.64 9.23 -39.77 -0.37 -4.01 16 26 C -0.13 -3.20 8.64 -39.27 -0.34 -3.54 16 27 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 28 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 30 H 0.39 6.12 8.46 -40.82 -0.35 5.78 16 31 H 0.08 1.29 7.93 -51.93 -0.41 0.88 16 32 H 0.08 1.01 7.93 -51.93 -0.41 0.60 16 33 H 0.15 1.12 8.06 -52.48 -0.42 0.69 16 34 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.09 1.78 6.68 -52.48 -0.35 1.43 16 37 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 LS Contribution 338.95 15.07 5.11 5.11 Total: -1.00 -28.64 338.95 -11.21 -39.84 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -3.51 Total: 8.20 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -5.51 Total: -24.98 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.17 Total: -40.00 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.95 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.48 Total: -0.98 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.64 -11.21 -39.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428867227.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.021 kcal (2) G-P(sol) polarization free energy of solvation -28.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds