Wall clock time and date at job start Tue Mar 31 2020 15:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86807 * 119.99801 * 2 1 4 4 H 1.48501 * 109.46869 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46809 * 300.00064 * 3 2 1 6 6 H 1.48506 * 109.47039 * 60.00120 * 3 2 1 7 7 C 1.39868 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00407 * 197.97854 * 7 2 1 9 9 C 1.41137 * 119.99750 * 17.97818 * 7 2 1 10 10 C 1.40886 * 120.15606 * 204.88107 * 9 7 2 11 11 C 1.36338 * 119.83460 * 180.25190 * 10 9 7 12 12 C 1.39562 * 120.16376 * 359.49783 * 11 10 9 13 13 N 1.38857 * 119.84458 * 180.25516 * 12 11 10 14 14 C 1.46494 * 120.00003 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46865 * 179.97438 * 14 13 12 16 16 N 1.27900 * 124.23246 * 89.70413 * 15 14 13 17 17 C 1.34719 * 117.83944 * 179.76806 * 16 15 14 18 18 C 1.40965 * 129.65615 * 180.22700 * 17 16 15 19 19 C 1.36163 * 120.46237 * 180.28198 * 18 17 16 20 20 C 1.38987 * 120.75024 * 0.02562 * 19 18 17 21 21 F 1.35102 * 119.98934 * 179.97438 * 20 19 18 22 22 C 1.37840 * 120.01441 * 0.02562 * 20 19 18 23 23 C 1.39344 * 119.93655 * 359.97438 * 22 20 19 24 24 S 1.70643 * 124.23513 * 270.00045 * 15 14 13 25 25 C 1.39570 * 120.31287 * 0.23439 * 12 11 10 26 26 C 1.36337 * 120.16226 * 0.02562 * 25 12 11 27 27 H 0.96992 * 120.00260 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.07910 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.91194 * 179.77566 * 11 10 9 30 30 H 0.97006 * 119.99303 * 0.02562 * 13 12 11 31 31 H 1.09000 * 109.47332 * 299.99769 * 14 13 12 32 32 H 1.09006 * 109.47128 * 60.00205 * 14 13 12 33 33 H 1.08007 * 119.77093 * 0.26741 * 18 17 16 34 34 H 1.08002 * 119.62285 * 180.02562 * 19 18 17 35 35 H 1.08004 * 120.03629 * 180.02562 * 22 20 19 36 36 H 1.08005 * 119.91593 * 180.02562 * 25 12 11 37 37 H 1.08002 * 120.07934 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.7030 1.3465 0.0006 5 1 1.8842 2.3964 -1.2125 6 1 1.8842 2.3965 1.2126 7 6 2.0085 -1.2113 0.0005 8 1 3.0489 -1.2340 0.2892 9 6 1.3545 -2.4039 -0.3762 10 6 1.8232 -3.6468 0.0932 11 6 1.1896 -4.7952 -0.2790 12 6 0.0729 -4.7408 -1.1144 13 7 -0.5705 -5.9142 -1.4850 14 6 -1.7433 -5.8611 -2.3613 15 6 -2.2485 -7.2590 -2.6095 16 7 -3.1148 -7.8514 -1.8784 17 6 -3.4785 -9.1021 -2.2221 18 6 -4.4011 -9.9721 -1.6063 19 6 -4.6235 -11.2152 -2.1155 20 6 -3.9471 -11.6504 -3.2490 21 9 -4.1793 -12.8871 -3.7408 22 6 -3.0387 -10.8208 -3.8708 23 6 -2.7997 -9.5457 -3.3622 24 16 -1.7312 -8.2523 -3.8970 25 6 -0.4004 -3.5127 -1.5787 26 6 0.2265 -2.3566 -1.2189 27 1 -0.4850 0.8400 0.0004 28 1 2.6846 -3.6900 0.7433 29 1 1.5501 -5.7489 0.0772 30 1 -0.2438 -6.7689 -1.1630 31 1 -2.5261 -5.2706 -1.8853 32 1 -1.4673 -5.4010 -3.3102 33 1 -4.9350 -9.6504 -0.7243 34 1 -5.3337 -11.8704 -1.6330 35 1 -2.5132 -11.1585 -4.7519 36 1 -1.2653 -3.4780 -2.2246 37 1 -0.1412 -1.4069 -1.5787 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428867227.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:00 Heat of formation + Delta-G solvation = 24.418833 kcal Electronic energy + Delta-G solvation = -22797.633955 eV Core-core repulsion = 19158.892014 eV Total energy + Delta-G solvation = -3638.741942 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.074 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.06186 -41.52294 -39.81137 -38.18462 -36.58613 -34.81166 -32.44114 -31.77861 -31.34260 -30.10931 -28.15405 -25.95974 -25.21127 -23.91666 -23.03278 -22.24030 -21.58195 -19.79640 -19.14624 -18.70553 -18.17744 -17.54404 -16.96286 -16.80031 -16.75525 -16.39979 -15.71911 -15.52702 -15.34515 -15.00961 -14.90257 -14.51477 -14.42994 -14.21468 -14.06240 -13.65476 -13.44460 -13.41214 -13.08906 -12.74452 -12.67929 -12.49753 -12.27033 -11.96644 -11.56787 -11.36391 -11.18619 -11.10022 -10.82694 -10.36271 -9.76162 -9.39601 -9.28487 -8.54983 -8.21655 -6.01223 -0.91442 -0.12868 0.01562 0.52246 0.97382 1.10409 1.19470 1.41838 1.55715 1.58508 2.28548 2.34922 2.57046 2.84271 2.96546 3.04742 3.36539 3.68982 3.85674 3.89571 3.96966 4.23294 4.36535 4.43272 4.50347 4.56888 4.72303 4.75894 4.93521 4.97994 5.04306 5.10928 5.27728 5.45672 5.52882 5.65916 5.78971 5.94851 6.19837 6.37659 6.41221 6.62710 6.83206 7.04047 7.09554 7.24374 8.48819 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.040668 B = 0.001997 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.335507 B =14018.504969 C =14088.422351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.031 3.969 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.270 1.270 7 C -0.503 4.503 8 H 0.068 0.932 9 C 0.037 3.963 10 C -0.196 4.196 11 C -0.160 4.160 12 C 0.112 3.888 13 N -0.745 5.745 14 C 0.210 3.790 15 C 0.069 3.931 16 N -0.471 5.471 17 C 0.046 3.954 18 C -0.035 4.035 19 C -0.127 4.127 20 C 0.117 3.883 21 F -0.130 7.130 22 C -0.110 4.110 23 C -0.179 4.179 24 S 0.172 5.828 25 C -0.170 4.170 26 C -0.143 4.143 27 H 0.282 0.718 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.395 0.605 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.161 0.839 34 H 0.179 0.821 35 H 0.162 0.838 36 H 0.111 0.889 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.262 -20.801 -8.585 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.181 4.181 3 Si 0.798 3.202 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.535 4.535 8 H 0.086 0.914 9 C 0.034 3.966 10 C -0.216 4.216 11 C -0.182 4.182 12 C 0.013 3.987 13 N -0.382 5.382 14 C 0.083 3.917 15 C -0.215 4.215 16 N -0.186 5.186 17 C -0.075 4.075 18 C -0.055 4.055 19 C -0.149 4.149 20 C 0.094 3.906 21 F -0.109 7.109 22 C -0.134 4.134 23 C -0.298 4.298 24 S 0.430 5.570 25 C -0.192 4.192 26 C -0.164 4.164 27 H 0.093 0.907 28 H 0.115 0.885 29 H 0.134 0.866 30 H 0.229 0.771 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.178 0.822 34 H 0.196 0.804 35 H 0.179 0.821 36 H 0.129 0.871 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.081 -20.101 -9.056 23.844 hybrid contribution -0.211 0.024 0.725 0.756 sum -9.292 -20.077 -8.331 23.640 Atomic orbital electron populations 1.69916 1.08705 1.29773 1.38385 1.26612 0.95464 1.04096 0.91884 0.85258 0.79409 0.76918 0.78653 1.18452 1.19079 1.19509 1.19614 0.98034 0.92720 1.43083 0.91416 1.17853 0.93568 0.93025 0.92145 1.20742 1.03239 0.92784 1.04838 1.20069 0.97745 0.97634 1.02724 1.17311 0.94955 0.85914 1.00505 1.43655 1.32028 1.05554 1.56942 1.19659 0.88806 0.87338 0.95944 1.26636 0.97247 1.01582 0.96009 1.66212 1.14059 1.08471 1.29839 1.19598 1.01328 0.90908 0.95690 1.20533 0.94342 0.91148 0.99516 1.21006 1.01527 0.96814 0.95519 1.17524 0.97593 0.80631 0.94828 1.91545 1.93269 1.38953 1.87104 1.20357 0.99948 0.90866 1.02235 1.23882 1.03806 1.00736 1.01380 1.83964 1.40211 1.03834 1.29036 1.20267 1.02008 0.91580 1.05311 1.20871 0.98828 0.96810 0.99853 0.90725 0.88494 0.86637 0.77056 0.90738 0.89359 0.82151 0.80359 0.82084 0.87118 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.48 10.96 21.82 0.24 -45.24 16 2 C 0.03 1.65 5.13 85.23 0.44 2.09 16 3 Si 0.98 39.85 29.60 68.60 2.03 41.88 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 5 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 6 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 7 C -0.50 -28.06 9.03 23.38 0.21 -27.85 16 8 H 0.07 3.68 7.91 -2.91 -0.02 3.65 16 9 C 0.04 2.03 5.57 -21.27 -0.12 1.91 16 10 C -0.20 -9.69 9.74 22.47 0.22 -9.47 16 11 C -0.16 -6.89 9.82 22.15 0.22 -6.67 16 12 C 0.11 4.60 6.67 38.67 0.26 4.86 16 13 N -0.74 -24.12 5.69 -342.71 -1.95 -26.07 16 14 C 0.21 5.85 5.44 85.64 0.47 6.32 16 15 C 0.07 1.74 6.65 88.68 0.59 2.33 16 16 N -0.47 -12.68 10.57 -182.51 -1.93 -14.61 16 17 C 0.05 1.03 7.00 39.77 0.28 1.31 16 18 C -0.03 -0.57 10.05 22.45 0.23 -0.34 16 19 C -0.13 -1.58 9.92 21.97 0.22 -1.36 16 20 C 0.12 1.72 7.30 22.36 0.16 1.88 16 21 F -0.13 -1.93 17.27 44.97 0.78 -1.15 16 22 C -0.11 -1.75 10.05 22.44 0.23 -1.52 16 23 C -0.18 -3.58 6.56 22.94 0.15 -3.43 16 24 S 0.17 3.44 23.11 -56.49 -1.31 2.13 16 25 C -0.17 -7.67 9.23 22.15 0.20 -7.46 16 26 C -0.14 -7.58 8.64 22.47 0.19 -7.39 16 27 H 0.28 13.88 8.30 -92.71 -0.77 13.11 16 28 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 29 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 30 H 0.40 11.72 8.46 -92.70 -0.78 10.94 16 31 H 0.07 2.24 7.93 -2.39 -0.02 2.22 16 32 H 0.09 2.24 7.93 -2.38 -0.02 2.22 16 33 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 34 H 0.18 1.08 8.06 -2.91 -0.02 1.05 16 35 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.11 4.40 6.68 -2.91 -0.02 4.38 16 37 H 0.10 5.61 6.16 -2.91 -0.02 5.59 16 Total: -1.00 -63.50 338.95 2.15 -61.35 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.35 Total: 26.52 kcal Atomic # 6 Polarization: -48.75 SS G_CDS: 3.94 Total: -44.81 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -3.64 Total: -85.92 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.78 Total: -1.15 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -1.31 Total: 2.13 kcal Total: -63.50 2.15 -61.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428867227.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.764 kcal (2) G-P(sol) polarization free energy of solvation -63.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds