Wall clock time and date at job start Tue Mar 31 2020 15:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99819 * 2 1 4 4 H 1.48499 * 109.47522 * 274.24288 * 3 2 1 5 5 H 1.48507 * 109.47256 * 34.24543 * 3 2 1 6 6 H 1.48507 * 109.46899 * 154.24341 * 3 2 1 7 7 C 1.37876 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99722 * 352.90883 * 7 2 1 9 9 C 1.50704 * 120.00263 * 173.19361 * 7 2 1 10 10 C 1.52998 * 115.54563 * 301.36461 * 9 7 2 11 11 N 1.46498 * 109.47310 * 294.79303 * 10 9 7 12 12 C 1.34778 * 119.99663 * 184.70876 * 11 10 9 13 13 O 1.21584 * 120.00258 * 4.73664 * 12 11 10 14 14 N 1.34779 * 119.99537 * 184.72934 * 12 11 10 15 15 C 1.46498 * 119.99961 * 184.68371 * 14 12 11 16 16 C 1.53003 * 109.47267 * 180.02562 * 15 14 12 17 17 C 1.50706 * 109.46807 * 180.02562 * 16 15 14 18 18 C 1.33347 * 125.18694 * 90.00936 * 17 16 15 19 19 C 1.38469 * 114.92672 * 179.97438 * 18 17 16 20 20 C 1.33494 * 114.88745 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 125.21081 * 180.02562 * 20 19 18 22 22 S 1.75874 * 125.19015 * 269.69181 * 17 16 15 23 23 C 1.53001 * 117.50059 * 155.69605 * 9 7 2 24 24 C 1.53001 * 117.49864 * 87.03551 * 9 7 2 25 25 H 0.97001 * 120.00265 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47282 * 54.79452 * 10 9 7 27 27 H 1.09003 * 109.46587 * 174.78768 * 10 9 7 28 28 H 0.96995 * 119.99834 * 4.70303 * 11 10 9 29 29 H 0.97001 * 120.00031 * 4.69283 * 14 12 11 30 30 H 1.08997 * 109.47217 * 300.00835 * 15 14 12 31 31 H 1.08999 * 109.46843 * 60.00666 * 15 14 12 32 32 H 1.08995 * 109.46950 * 300.00257 * 16 15 14 33 33 H 1.08999 * 109.46888 * 60.00397 * 16 15 14 34 34 H 1.08002 * 122.53400 * 359.96740 * 18 17 16 35 35 H 1.08009 * 122.55683 * 179.97438 * 19 18 17 36 36 H 1.09000 * 117.49568 * 0.02562 * 23 9 7 37 37 H 1.08993 * 117.49839 * 145.01790 * 23 9 7 38 38 H 1.08999 * 117.49851 * 214.98167 * 24 9 7 39 39 H 1.08997 * 117.49732 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4069 2.0983 -1.3962 5 1 1.4942 2.6252 0.7879 6 1 3.5886 1.4159 0.6084 7 6 2.0045 -1.1940 -0.0005 8 1 1.4707 -2.1258 0.1145 9 6 3.5036 -1.1985 -0.1552 10 6 4.0367 -0.5526 -1.4356 11 7 3.6011 -1.3348 -2.5952 12 6 4.0323 -1.0074 -3.8294 13 8 4.8494 -0.1184 -3.9719 14 7 3.5579 -1.6656 -4.9056 15 6 4.1009 -1.3813 -6.2362 16 6 3.3945 -2.2569 -7.2731 17 6 3.9536 -1.9648 -8.6418 18 6 4.9913 -2.5912 -9.1977 19 6 5.3261 -2.1520 -10.4675 20 6 4.5586 -1.1683 -10.9423 21 17 4.7391 -0.4201 -12.4983 22 16 3.3322 -0.7511 -9.7526 23 6 4.2674 -2.4025 0.3997 24 6 4.3452 -1.0509 1.1140 25 1 -0.4850 0.8400 0.0004 26 1 3.6515 0.4637 -1.5175 27 1 5.1259 -0.5268 -1.4031 28 1 3.0024 -2.0884 -2.4746 29 1 2.8569 -2.3275 -4.7991 30 1 3.9394 -0.3307 -6.4776 31 1 5.1695 -1.5962 -6.2460 32 1 3.5558 -3.3075 -7.0318 33 1 2.3261 -2.0416 -7.2631 34 1 5.5298 -3.3813 -8.6955 35 1 6.1457 -2.5732 -11.0309 36 1 3.6856 -3.1915 0.8762 37 1 5.1500 -2.7342 -0.1472 38 1 5.2789 -0.4939 1.0367 39 1 3.8146 -0.9500 2.0607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430432567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:26 Heat of formation + Delta-G solvation = 17.525920 kcal Electronic energy + Delta-G solvation = -22161.445261 eV Core-core repulsion = 18643.431876 eV Total energy + Delta-G solvation = -3518.013385 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.59679 -38.53435 -37.22562 -36.99162 -35.24255 -33.39912 -32.21787 -31.99684 -28.12540 -26.61434 -25.18149 -24.17195 -22.49703 -21.61099 -20.49300 -19.80622 -19.32163 -18.10944 -17.44624 -16.68332 -16.20451 -15.73352 -15.55141 -15.05362 -14.44430 -14.24475 -14.08344 -13.86637 -13.72142 -13.32280 -13.08515 -12.97249 -12.83242 -12.49723 -12.31953 -12.12318 -11.70701 -11.59390 -11.28180 -11.06411 -11.03060 -10.68222 -10.57143 -10.25373 -9.86264 -9.52054 -9.20840 -8.99609 -8.92434 -8.88303 -8.81957 -8.50881 -8.14725 -6.20410 -4.21824 0.41419 0.73630 1.45172 1.86863 2.21982 3.06779 3.29166 3.38776 3.44339 3.66381 4.34029 4.37388 4.64818 4.72850 4.76183 4.90299 5.00573 5.08274 5.21302 5.30455 5.51007 5.66145 5.67439 5.76463 5.83396 5.95718 5.99042 6.13924 6.25224 6.43910 6.48996 6.65116 6.70413 6.91586 7.06960 7.17892 7.39364 7.65502 8.38928 8.53131 8.81412 9.06587 9.43721 10.90465 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.022973 B = 0.002178 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.553293 B =12850.904224 C =13306.103784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.083 3.917 3 Si 0.870 3.130 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.252 1.252 7 C -0.489 4.489 8 H 0.078 0.922 9 C -0.017 4.017 10 C 0.172 3.828 11 N -0.718 5.718 12 C 0.701 3.299 13 O -0.604 6.604 14 N -0.753 5.753 15 C 0.146 3.854 16 C -0.063 4.063 17 C -0.162 4.162 18 C -0.130 4.130 19 C -0.116 4.116 20 C -0.155 4.155 21 Cl -0.018 7.018 22 S 0.160 5.840 23 C -0.180 4.180 24 C -0.188 4.188 25 H 0.266 0.734 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.403 0.597 29 H 0.397 0.603 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.835 -6.452 -21.008 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.120 4.120 3 Si 0.698 3.302 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.176 1.176 7 C -0.526 4.526 8 H 0.096 0.904 9 C -0.018 4.018 10 C 0.048 3.952 11 N -0.371 5.371 12 C 0.400 3.600 13 O -0.483 6.483 14 N -0.411 5.411 15 C 0.021 3.979 16 C -0.103 4.103 17 C -0.280 4.280 18 C -0.160 4.160 19 C -0.148 4.148 20 C -0.299 4.299 21 Cl 0.011 6.989 22 S 0.423 5.577 23 C -0.217 4.217 24 C -0.227 4.227 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.238 0.762 29 H 0.231 0.769 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.250 -4.372 -21.226 22.852 hybrid contribution 0.926 -0.580 -0.178 1.107 sum 8.176 -4.952 -21.404 23.441 Atomic orbital electron populations 1.69888 1.06376 1.27310 1.49210 1.24911 0.94516 0.99094 0.93518 0.87008 0.81298 0.83557 0.78338 1.20394 1.21998 1.17573 1.20239 0.86730 0.94617 1.50995 0.90419 1.19610 0.94742 0.97864 0.89564 1.20949 0.96649 0.93926 0.83725 1.44986 1.52160 1.35548 1.04412 1.15980 0.81464 0.81823 0.80713 1.90875 1.37804 1.34016 1.85653 1.45014 1.43931 1.46197 1.05928 1.21055 0.97772 0.99111 0.79968 1.20383 1.00506 1.01550 0.87829 1.24389 1.01690 1.01510 1.00433 1.20000 0.98223 1.02903 0.94883 1.20188 1.01246 0.96929 0.96429 1.25273 1.05578 1.04618 0.94428 1.98371 1.96807 1.80759 1.22980 1.84608 1.30323 1.37030 1.05761 1.22772 1.01761 0.91862 1.05337 1.23062 1.01230 0.99748 0.98636 0.92448 0.92917 0.93251 0.76194 0.76915 0.91545 0.91432 0.88683 0.89557 0.83248 0.83390 0.89695 0.90873 0.91111 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.96 55.43 0.77 -25.14 16 2 C 0.08 2.28 5.46 -17.82 -0.10 2.18 16 3 Si 0.87 21.42 24.69 -169.99 -4.20 17.22 16 4 H -0.28 -7.02 6.96 56.52 0.39 -6.63 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.25 -5.88 6.12 56.52 0.35 -5.53 16 7 C -0.49 -12.62 9.19 -34.44 -0.32 -12.94 16 8 H 0.08 2.17 8.06 -52.48 -0.42 1.74 16 9 C -0.02 -0.36 0.85 -155.66 -0.13 -0.49 16 10 C 0.17 3.70 5.08 -4.04 -0.02 3.68 16 11 N -0.72 -13.69 5.48 -65.23 -0.36 -14.05 16 12 C 0.70 13.06 8.55 -86.92 -0.74 12.32 16 13 O -0.60 -13.58 16.33 5.29 0.09 -13.49 16 14 N -0.75 -10.13 5.56 -65.23 -0.36 -10.49 16 15 C 0.15 1.68 5.66 -4.04 -0.02 1.66 16 16 C -0.06 -0.50 5.82 -27.88 -0.16 -0.66 16 17 C -0.16 -1.37 5.76 -36.01 -0.21 -1.58 16 18 C -0.13 -1.01 10.05 -41.20 -0.41 -1.43 16 19 C -0.12 -0.92 10.13 -41.16 -0.42 -1.34 16 20 C -0.16 -1.39 7.10 29.07 0.21 -1.18 16 21 Cl -0.02 -0.15 29.29 -51.86 -1.52 -1.67 16 22 S 0.16 1.44 23.33 -107.50 -2.51 -1.07 16 23 C -0.18 -3.41 9.96 -26.69 -0.27 -3.67 16 24 C -0.19 -3.81 8.70 -26.69 -0.23 -4.04 16 25 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.05 1.27 4.25 -51.93 -0.22 1.05 16 27 H 0.05 1.03 8.06 -51.93 -0.42 0.62 16 28 H 0.40 7.05 8.36 -40.82 -0.34 6.71 16 29 H 0.40 4.22 8.50 -40.82 -0.35 3.88 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 357.92 15.07 5.39 5.39 Total: -1.00 -31.60 357.92 -10.69 -42.29 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -5.18 Total: 8.50 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -2.83 Total: -7.49 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.05 Total: -49.68 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.20 Total: 17.22 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.51 Total: -1.07 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.52 Total: -1.67 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.60 -10.69 -42.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430432567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.814 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds