Wall clock time and date at job start Tue Mar 31 2020 15:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99819 * 2 1 4 4 H 1.48499 * 109.47522 * 274.24288 * 3 2 1 5 5 H 1.48507 * 109.47256 * 34.24543 * 3 2 1 6 6 H 1.48507 * 109.46899 * 154.24341 * 3 2 1 7 7 C 1.37876 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99722 * 352.90883 * 7 2 1 9 9 C 1.50704 * 120.00263 * 173.19361 * 7 2 1 10 10 C 1.52998 * 115.54563 * 301.36461 * 9 7 2 11 11 N 1.46498 * 109.47310 * 294.79303 * 10 9 7 12 12 C 1.34778 * 119.99663 * 184.70876 * 11 10 9 13 13 O 1.21584 * 120.00258 * 4.73664 * 12 11 10 14 14 N 1.34779 * 119.99537 * 184.72934 * 12 11 10 15 15 C 1.46498 * 119.99961 * 184.68371 * 14 12 11 16 16 C 1.53003 * 109.47267 * 180.02562 * 15 14 12 17 17 C 1.50706 * 109.46807 * 180.02562 * 16 15 14 18 18 C 1.33347 * 125.18694 * 90.00936 * 17 16 15 19 19 C 1.38469 * 114.92672 * 179.97438 * 18 17 16 20 20 C 1.33494 * 114.88745 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 125.21081 * 180.02562 * 20 19 18 22 22 S 1.75874 * 125.19015 * 269.69181 * 17 16 15 23 23 C 1.53001 * 117.50059 * 155.69605 * 9 7 2 24 24 C 1.53001 * 117.49864 * 87.03551 * 9 7 2 25 25 H 0.97001 * 120.00265 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47282 * 54.79452 * 10 9 7 27 27 H 1.09003 * 109.46587 * 174.78768 * 10 9 7 28 28 H 0.96995 * 119.99834 * 4.70303 * 11 10 9 29 29 H 0.97001 * 120.00031 * 4.69283 * 14 12 11 30 30 H 1.08997 * 109.47217 * 300.00835 * 15 14 12 31 31 H 1.08999 * 109.46843 * 60.00666 * 15 14 12 32 32 H 1.08995 * 109.46950 * 300.00257 * 16 15 14 33 33 H 1.08999 * 109.46888 * 60.00397 * 16 15 14 34 34 H 1.08002 * 122.53400 * 359.96740 * 18 17 16 35 35 H 1.08009 * 122.55683 * 179.97438 * 19 18 17 36 36 H 1.09000 * 117.49568 * 0.02562 * 23 9 7 37 37 H 1.08993 * 117.49839 * 145.01790 * 23 9 7 38 38 H 1.08999 * 117.49851 * 214.98167 * 24 9 7 39 39 H 1.08997 * 117.49732 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4069 2.0983 -1.3962 5 1 1.4942 2.6252 0.7879 6 1 3.5886 1.4159 0.6084 7 6 2.0045 -1.1940 -0.0005 8 1 1.4707 -2.1258 0.1145 9 6 3.5036 -1.1985 -0.1552 10 6 4.0367 -0.5526 -1.4356 11 7 3.6011 -1.3348 -2.5952 12 6 4.0323 -1.0074 -3.8294 13 8 4.8494 -0.1184 -3.9719 14 7 3.5579 -1.6656 -4.9056 15 6 4.1009 -1.3813 -6.2362 16 6 3.3945 -2.2569 -7.2731 17 6 3.9536 -1.9648 -8.6418 18 6 4.9913 -2.5912 -9.1977 19 6 5.3261 -2.1520 -10.4675 20 6 4.5586 -1.1683 -10.9423 21 17 4.7391 -0.4201 -12.4983 22 16 3.3322 -0.7511 -9.7526 23 6 4.2674 -2.4025 0.3997 24 6 4.3452 -1.0509 1.1140 25 1 -0.4850 0.8400 0.0004 26 1 3.6515 0.4637 -1.5175 27 1 5.1259 -0.5268 -1.4031 28 1 3.0024 -2.0884 -2.4746 29 1 2.8569 -2.3275 -4.7991 30 1 3.9394 -0.3307 -6.4776 31 1 5.1695 -1.5962 -6.2460 32 1 3.5558 -3.3075 -7.0318 33 1 2.3261 -2.0416 -7.2631 34 1 5.5298 -3.3813 -8.6955 35 1 6.1457 -2.5732 -11.0309 36 1 3.6856 -3.1915 0.8762 37 1 5.1500 -2.7342 -0.1472 38 1 5.2789 -0.4939 1.0367 39 1 3.8146 -0.9500 2.0607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430432567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:26 Heat of formation + Delta-G solvation = -2.985433 kcal Electronic energy + Delta-G solvation = -22162.334700 eV Core-core repulsion = 18643.431876 eV Total energy + Delta-G solvation = -3518.902824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.02379 -39.22830 -38.77151 -37.72057 -36.32593 -34.96948 -34.27504 -32.92646 -29.15625 -28.15242 -26.84111 -25.06791 -23.33374 -23.12980 -21.87904 -21.10148 -20.44602 -19.42175 -18.46809 -18.23776 -17.24070 -17.14312 -16.80474 -16.46446 -15.69653 -15.56255 -15.36383 -14.92790 -14.87867 -14.66221 -14.39438 -14.12228 -13.89231 -13.86804 -13.48534 -13.28609 -13.00473 -12.63276 -12.44794 -12.28604 -12.14920 -12.05508 -11.95665 -11.68270 -11.53043 -11.32978 -11.02720 -10.69936 -10.37338 -10.28520 -9.64523 -9.59348 -9.53445 -8.31499 -6.32748 -0.23694 0.08813 0.81575 1.21496 1.31268 1.38443 1.47485 1.58212 1.82422 2.19526 2.33841 2.94756 3.27858 3.50946 3.84436 3.94707 4.04470 4.04735 4.30203 4.32379 4.44531 4.49735 4.55620 4.60819 4.79209 4.82376 4.94845 4.97209 5.01310 5.08988 5.13217 5.27897 5.38266 5.49494 5.53793 5.64101 5.70344 6.10976 6.31268 6.72939 7.18926 7.34606 7.63088 8.82667 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.022973 B = 0.002178 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.553293 B =12850.904224 C =13306.103784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.036 3.964 3 Si 0.917 3.083 4 H -0.292 1.292 5 H -0.298 1.298 6 H -0.230 1.230 7 C -0.471 4.471 8 H 0.049 0.951 9 C -0.043 4.043 10 C 0.178 3.822 11 N -0.717 5.717 12 C 0.696 3.304 13 O -0.644 6.644 14 N -0.734 5.734 15 C 0.147 3.853 16 C -0.051 4.051 17 C -0.168 4.168 18 C -0.126 4.126 19 C -0.115 4.115 20 C -0.167 4.167 21 Cl -0.018 7.018 22 S 0.130 5.870 23 C -0.152 4.152 24 C -0.186 4.186 25 H 0.264 0.736 26 H 0.025 0.975 27 H 0.059 0.941 28 H 0.410 0.590 29 H 0.413 0.587 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.173 0.827 35 H 0.167 0.833 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.700 -8.009 -21.430 24.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.163 4.163 3 Si 0.745 3.255 4 H -0.219 1.219 5 H -0.225 1.225 6 H -0.152 1.152 7 C -0.509 4.509 8 H 0.067 0.933 9 C -0.044 4.044 10 C 0.053 3.947 11 N -0.371 5.371 12 C 0.396 3.604 13 O -0.527 6.527 14 N -0.391 5.391 15 C 0.022 3.978 16 C -0.090 4.090 17 C -0.286 4.286 18 C -0.156 4.156 19 C -0.147 4.147 20 C -0.311 4.311 21 Cl 0.010 6.990 22 S 0.393 5.607 23 C -0.189 4.189 24 C -0.224 4.224 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.246 0.754 29 H 0.250 0.750 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.139 0.861 33 H 0.111 0.889 34 H 0.190 0.810 35 H 0.184 0.816 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.110 -5.976 -21.663 24.248 hybrid contribution 0.376 -0.192 -0.100 0.433 sum 9.485 -6.168 -21.763 24.528 Atomic orbital electron populations 1.69995 1.07790 1.27740 1.52082 1.25501 0.94896 1.01768 0.94095 0.86257 0.81299 0.80563 0.77403 1.21929 1.22523 1.15244 1.20371 0.88947 0.92982 1.48598 0.93301 1.19461 0.92671 1.01462 0.90804 1.20736 0.96967 0.92774 0.84206 1.44887 1.52402 1.35555 1.04280 1.16175 0.81156 0.81710 0.81369 1.90844 1.39718 1.35887 1.86256 1.44889 1.43505 1.45342 1.05388 1.21151 0.98148 0.98884 0.79633 1.20304 1.00319 1.02083 0.86298 1.24452 1.02206 1.01479 1.00479 1.20297 0.97674 1.02921 0.94682 1.20488 1.01277 0.96281 0.96637 1.25401 1.05891 1.05251 0.94541 1.98367 1.96798 1.80861 1.22968 1.84694 1.31195 1.38041 1.06757 1.22818 1.01548 0.90935 1.03579 1.23110 1.01248 1.00944 0.97101 0.92685 0.95665 0.92294 0.75379 0.75030 0.93616 0.91622 0.86092 0.88923 0.80989 0.81571 0.89451 0.88231 0.89094 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.60 13.96 21.45 0.30 -55.30 16 2 C 0.04 2.00 5.46 84.66 0.46 2.46 16 3 Si 0.92 44.45 24.69 68.60 1.69 46.15 16 4 H -0.29 -14.73 6.96 99.48 0.69 -14.04 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.23 -10.16 6.12 99.48 0.61 -9.55 16 7 C -0.47 -24.23 9.19 25.60 0.24 -24.00 16 8 H 0.05 2.75 8.06 -2.91 -0.02 2.73 16 9 C -0.04 -1.79 0.85 -52.93 -0.04 -1.84 16 10 C 0.18 7.41 5.08 86.38 0.44 7.85 16 11 N -0.72 -26.39 5.48 -478.54 -2.62 -29.01 16 12 C 0.70 25.16 8.55 179.05 1.53 26.70 16 13 O -0.64 -28.62 16.33 -3.98 -0.07 -28.68 16 14 N -0.73 -18.49 5.56 -478.54 -2.66 -21.15 16 15 C 0.15 3.15 5.66 86.38 0.49 3.64 16 16 C -0.05 -0.68 5.82 29.85 0.17 -0.51 16 17 C -0.17 -2.53 5.76 24.58 0.14 -2.39 16 18 C -0.13 -1.64 10.05 21.22 0.21 -1.43 16 19 C -0.11 -1.60 10.13 21.25 0.22 -1.39 16 20 C -0.17 -2.82 7.10 66.74 0.47 -2.35 16 21 Cl -0.02 -0.30 29.29 -2.72 -0.08 -0.38 16 22 S 0.13 2.27 23.33 -56.49 -1.32 0.95 16 23 C -0.15 -5.23 9.96 30.62 0.30 -4.93 16 24 C -0.19 -6.95 8.70 30.62 0.27 -6.68 16 25 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 26 H 0.03 1.20 4.25 -2.39 -0.01 1.19 16 27 H 0.06 2.33 8.06 -2.39 -0.02 2.31 16 28 H 0.41 13.73 8.36 -92.71 -0.78 12.96 16 29 H 0.41 7.83 8.50 -92.71 -0.79 7.04 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 35 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 36 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -68.80 357.92 -0.44 -69.23 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -0.58 Total: 23.05 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 4.90 Total: -4.85 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -4.99 Total: -105.47 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.07 Total: -28.68 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.69 Total: 46.15 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.32 Total: 0.95 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -68.80 -0.44 -69.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430432567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.248 kcal (2) G-P(sol) polarization free energy of solvation -68.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds