Wall clock time and date at job start Tue Mar 31 2020 15:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47195 * 274.91779 * 3 2 1 5 5 C 1.37100 * 120.00314 * 264.23397 * 4 3 2 6 6 H 1.08001 * 119.99500 * 197.72079 * 5 4 3 7 7 C 1.38943 * 119.99647 * 17.72163 * 5 4 3 8 8 N 1.31408 * 120.00658 * 21.38805 * 7 5 4 9 9 Si 1.86807 * 119.99682 * 201.39062 * 7 5 4 10 10 H 1.48496 * 109.47238 * 89.99773 * 9 7 5 11 11 H 1.48499 * 109.46998 * 210.00254 * 9 7 5 12 12 H 1.48501 * 109.46883 * 329.99624 * 9 7 5 13 13 C 1.34783 * 119.99501 * 84.23457 * 4 3 2 14 14 O 1.21287 * 119.99675 * 180.02562 * 13 4 3 15 15 C 1.50700 * 120.00195 * 0.27093 * 13 4 3 16 16 C 1.50693 * 109.47365 * 179.72258 * 15 13 4 17 17 C 1.38256 * 119.94108 * 269.73442 * 16 15 13 18 18 C 1.38180 * 120.09932 * 179.76688 * 17 16 15 19 19 C 1.38666 * 119.96304 * 0.50253 * 18 17 16 20 20 O 1.35960 * 120.05662 * 179.72642 * 19 18 17 21 21 C 1.42901 * 117.00482 * 0.02562 * 20 19 18 22 22 F 1.39899 * 109.46626 * 300.00080 * 21 20 19 23 23 F 1.39899 * 109.46873 * 59.99934 * 21 20 19 24 24 C 1.38898 * 119.87817 * 359.74535 * 19 18 17 25 25 F 1.35104 * 120.05124 * 179.97438 * 24 19 18 26 26 C 1.38260 * 119.93545 * 90.00239 * 16 15 13 27 27 H 1.09001 * 109.46594 * 154.92584 * 3 2 1 28 28 H 1.08998 * 109.47115 * 34.92309 * 3 2 1 29 29 H 0.96999 * 120.00569 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.47258 * 299.73247 * 15 13 4 31 31 H 1.09010 * 109.46756 * 59.72566 * 15 13 4 32 32 H 1.08000 * 119.95354 * 0.02562 * 17 16 15 33 33 H 1.07999 * 120.01874 * 180.24834 * 18 17 16 34 34 H 1.08996 * 109.47190 * 179.97438 * 21 20 19 35 35 H 1.08004 * 119.97983 * 359.95697 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.1175 1.3761 5 6 3.4369 1.0075 2.0818 6 1 4.0533 0.9251 2.9648 7 6 2.9890 2.2536 1.6608 8 7 1.9357 2.3440 0.8802 9 14 3.8841 3.8005 2.2045 10 1 4.9488 4.1274 1.2224 11 1 2.9207 4.9278 2.2839 12 1 4.4942 3.5759 3.5397 13 6 3.2111 -1.3324 1.9485 14 8 3.6150 -1.4303 3.0879 15 6 2.8426 -2.5695 1.1708 16 6 3.0663 -3.7877 2.0291 17 6 4.2913 -4.4284 2.0120 18 6 4.5015 -5.5429 2.8015 19 6 3.4792 -6.0258 3.6043 20 8 3.6822 -7.1255 4.3775 21 6 4.9738 -7.7336 4.3144 22 9 5.2323 -8.1439 3.0022 23 9 5.9446 -6.8089 4.7138 24 6 2.2473 -5.3842 3.6166 25 9 1.2487 -5.8520 4.3971 26 6 2.0443 -4.2659 2.8281 27 1 2.9709 0.9317 -0.4355 28 1 2.9717 -0.8418 -0.5883 29 1 1.6228 3.2140 0.5867 30 1 1.7933 -2.5172 0.8805 31 1 3.4638 -2.6355 0.2774 32 1 5.0865 -4.0549 1.3839 33 1 5.4602 -6.0400 2.7901 34 1 5.0012 -8.5980 4.9778 35 1 1.0871 -3.7657 2.8370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448844053.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:36 Heat of formation + Delta-G solvation = -155.872646 kcal Electronic energy + Delta-G solvation = -27309.022417 eV Core-core repulsion = 22665.480049 eV Total energy + Delta-G solvation = -4643.542368 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.59269 -48.75133 -47.57867 -40.02418 -38.98706 -37.54529 -35.78896 -34.38549 -32.29923 -31.62011 -30.63428 -28.04998 -27.40036 -25.97532 -24.47174 -23.08267 -21.90167 -19.36695 -19.26136 -18.41201 -18.16165 -17.98221 -16.82816 -16.59351 -16.52772 -16.21801 -15.75648 -15.69332 -14.79940 -14.59739 -14.54178 -14.14152 -14.01574 -13.99018 -13.83175 -13.80551 -13.32216 -13.04648 -12.92757 -12.82437 -12.62487 -12.12042 -11.87103 -11.65715 -11.58621 -11.45219 -11.25849 -11.20293 -11.02080 -10.60971 -10.42772 -10.34421 -9.30832 -8.90026 -8.72126 -8.21900 -8.09667 -6.54868 -4.04438 1.17482 1.19555 2.29450 3.07163 3.19559 3.20204 3.24014 3.46260 3.55498 3.74308 3.92322 4.02445 4.09436 4.16996 4.37646 4.65534 4.72814 4.82492 4.88467 5.01126 5.15329 5.29052 5.39086 5.54544 5.64251 5.77188 5.85987 6.04617 6.08705 6.15771 6.38348 6.45341 6.60001 6.97157 7.43443 7.84410 8.23156 8.68379 8.95467 9.14272 9.67531 10.51194 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019189 B = 0.003080 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.799747 B = 9088.270630 C = 9705.044945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.244 3.756 3 C 0.220 3.780 4 N -0.443 5.443 5 C -0.314 4.314 6 H 0.109 0.891 7 C 0.033 3.967 8 N -0.877 5.877 9 Si 0.927 3.073 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.457 3.543 14 O -0.563 6.563 15 C -0.103 4.103 16 C -0.036 4.036 17 C -0.078 4.078 18 C -0.161 4.161 19 C 0.059 3.941 20 O -0.317 6.317 21 C 0.412 3.588 22 F -0.199 7.199 23 F -0.197 7.197 24 C 0.089 3.911 25 F -0.133 7.133 26 C -0.107 4.107 27 H 0.128 0.872 28 H 0.085 0.915 29 H 0.274 0.726 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.181 0.819 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.015 -16.996 -0.920 18.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.074 4.074 3 C 0.092 3.908 4 N -0.163 5.163 5 C -0.441 4.441 6 H 0.127 0.873 7 C -0.171 4.171 8 N -0.516 5.516 9 Si 0.754 3.246 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.245 3.755 14 O -0.445 6.445 15 C -0.143 4.143 16 C -0.037 4.037 17 C -0.096 4.096 18 C -0.179 4.179 19 C 0.016 3.984 20 O -0.234 6.234 21 C 0.322 3.678 22 F -0.181 7.181 23 F -0.178 7.178 24 C 0.069 3.931 25 F -0.112 7.112 26 C -0.126 4.126 27 H 0.146 0.854 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.198 0.802 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.308 -16.963 -0.285 17.777 hybrid contribution 0.729 1.034 0.222 1.284 sum 6.037 -15.930 -0.063 17.036 Atomic orbital electron populations 1.80912 1.13599 1.12047 1.08557 1.29330 0.95385 0.90311 0.92413 1.18768 0.81609 1.04206 0.86197 1.43652 1.56686 1.05574 1.10429 1.19737 1.29991 0.82529 1.11810 0.87324 1.25270 0.94948 0.99565 0.97331 1.69850 1.19800 1.26166 1.35773 0.85896 0.79014 0.80306 0.79400 1.20112 1.21111 1.19332 1.19914 0.84335 0.83896 0.87352 1.90588 1.49678 1.85973 1.18288 1.20739 1.03751 0.91511 0.98308 1.19236 0.92857 0.95079 0.96552 1.20861 0.96635 0.93845 0.98256 1.21313 0.98225 0.99643 0.98754 1.18722 0.94555 0.89222 0.95912 1.86636 1.32359 1.41298 1.63151 1.23354 0.74986 0.88367 0.81106 1.93094 1.93712 1.90426 1.40883 1.93118 1.64668 1.69646 1.90409 1.16787 0.83496 0.96314 0.96510 1.91492 1.59022 1.88020 1.72646 1.20900 1.01368 0.94338 0.96008 0.85411 0.89735 0.91579 0.88913 0.88355 0.84615 0.84257 0.80220 0.83863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.76 18.54 42.15 0.78 -9.98 16 2 C 0.24 5.11 12.97 -20.76 -0.27 4.84 16 3 C 0.22 4.05 4.91 -6.83 -0.03 4.02 16 4 N -0.44 -9.77 2.60 -117.93 -0.31 -10.08 16 5 C -0.31 -7.82 9.32 -14.93 -0.14 -7.96 16 6 H 0.11 2.89 7.39 -52.49 -0.39 2.50 16 7 C 0.03 0.78 4.87 -17.47 -0.09 0.70 16 8 N -0.88 -21.51 9.48 55.50 0.53 -20.99 16 9 Si 0.93 19.24 29.60 -169.99 -5.03 14.21 16 10 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 11 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 13 C 0.46 9.71 7.56 -10.98 -0.08 9.63 16 14 O -0.56 -14.19 15.68 5.55 0.09 -14.11 16 15 C -0.10 -1.61 4.43 -29.04 -0.13 -1.74 16 16 C -0.04 -0.57 4.37 -104.61 -0.46 -1.03 16 17 C -0.08 -1.10 9.69 -39.60 -0.38 -1.48 16 18 C -0.16 -2.21 8.26 -39.44 -0.33 -2.53 16 19 C 0.06 0.87 6.49 -39.18 -0.25 0.62 16 20 O -0.32 -3.98 10.30 -19.61 -0.20 -4.18 16 21 C 0.41 3.56 5.98 101.05 0.60 4.16 16 22 F -0.20 -1.91 15.58 2.25 0.04 -1.88 16 23 F -0.20 -2.09 15.58 2.25 0.04 -2.05 16 24 C 0.09 1.41 7.31 -39.30 -0.29 1.12 16 25 F -0.13 -2.15 17.11 2.25 0.04 -2.11 16 26 C -0.11 -1.72 9.67 -39.54 -0.38 -2.10 16 27 H 0.13 2.44 6.46 -51.93 -0.34 2.10 16 28 H 0.08 1.12 6.67 -51.93 -0.35 0.77 16 29 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 30 H 0.09 1.40 7.47 -51.93 -0.39 1.01 16 31 H 0.10 1.18 7.35 -51.92 -0.38 0.80 16 32 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.14 1.68 5.10 -52.49 -0.27 1.42 16 34 H 0.18 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.14 2.20 8.06 -52.48 -0.42 1.78 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -32.25 324.63 -3.88 -36.13 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -2.51 Total: 1.89 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -2.23 Total: 8.25 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 1.00 Total: -41.05 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.11 Total: -18.28 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 0.11 Total: -6.04 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.25 -3.88 -36.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448844053.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.741 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds