Wall clock time and date at job start Tue Mar 31 2020 15:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47195 * 274.91779 * 3 2 1 5 5 C 1.37100 * 120.00314 * 264.23397 * 4 3 2 6 6 H 1.08001 * 119.99500 * 197.72079 * 5 4 3 7 7 C 1.38943 * 119.99647 * 17.72163 * 5 4 3 8 8 N 1.31408 * 120.00658 * 21.38805 * 7 5 4 9 9 Si 1.86807 * 119.99682 * 201.39062 * 7 5 4 10 10 H 1.48496 * 109.47238 * 89.99773 * 9 7 5 11 11 H 1.48499 * 109.46998 * 210.00254 * 9 7 5 12 12 H 1.48501 * 109.46883 * 329.99624 * 9 7 5 13 13 C 1.34783 * 119.99501 * 84.23457 * 4 3 2 14 14 O 1.21287 * 119.99675 * 180.02562 * 13 4 3 15 15 C 1.50700 * 120.00195 * 0.27093 * 13 4 3 16 16 C 1.50693 * 109.47365 * 179.72258 * 15 13 4 17 17 C 1.38256 * 119.94108 * 269.73442 * 16 15 13 18 18 C 1.38180 * 120.09932 * 179.76688 * 17 16 15 19 19 C 1.38666 * 119.96304 * 0.50253 * 18 17 16 20 20 O 1.35960 * 120.05662 * 179.72642 * 19 18 17 21 21 C 1.42901 * 117.00482 * 0.02562 * 20 19 18 22 22 F 1.39899 * 109.46626 * 300.00080 * 21 20 19 23 23 F 1.39899 * 109.46873 * 59.99934 * 21 20 19 24 24 C 1.38898 * 119.87817 * 359.74535 * 19 18 17 25 25 F 1.35104 * 120.05124 * 179.97438 * 24 19 18 26 26 C 1.38260 * 119.93545 * 90.00239 * 16 15 13 27 27 H 1.09001 * 109.46594 * 154.92584 * 3 2 1 28 28 H 1.08998 * 109.47115 * 34.92309 * 3 2 1 29 29 H 0.96999 * 120.00569 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.47258 * 299.73247 * 15 13 4 31 31 H 1.09010 * 109.46756 * 59.72566 * 15 13 4 32 32 H 1.08000 * 119.95354 * 0.02562 * 17 16 15 33 33 H 1.07999 * 120.01874 * 180.24834 * 18 17 16 34 34 H 1.08996 * 109.47190 * 179.97438 * 21 20 19 35 35 H 1.08004 * 119.97983 * 359.95697 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.1175 1.3761 5 6 3.4369 1.0075 2.0818 6 1 4.0533 0.9251 2.9648 7 6 2.9890 2.2536 1.6608 8 7 1.9357 2.3440 0.8802 9 14 3.8841 3.8005 2.2045 10 1 4.9488 4.1274 1.2224 11 1 2.9207 4.9278 2.2839 12 1 4.4942 3.5759 3.5397 13 6 3.2111 -1.3324 1.9485 14 8 3.6150 -1.4303 3.0879 15 6 2.8426 -2.5695 1.1708 16 6 3.0663 -3.7877 2.0291 17 6 4.2913 -4.4284 2.0120 18 6 4.5015 -5.5429 2.8015 19 6 3.4792 -6.0258 3.6043 20 8 3.6822 -7.1255 4.3775 21 6 4.9738 -7.7336 4.3144 22 9 5.2323 -8.1439 3.0022 23 9 5.9446 -6.8089 4.7138 24 6 2.2473 -5.3842 3.6166 25 9 1.2487 -5.8520 4.3971 26 6 2.0443 -4.2659 2.8281 27 1 2.9709 0.9317 -0.4355 28 1 2.9717 -0.8418 -0.5883 29 1 1.6228 3.2140 0.5867 30 1 1.7933 -2.5172 0.8805 31 1 3.4638 -2.6355 0.2774 32 1 5.0865 -4.0549 1.3839 33 1 5.4602 -6.0400 2.7901 34 1 5.0012 -8.5980 4.9778 35 1 1.0871 -3.7657 2.8370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448844053.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:35 Heat of formation + Delta-G solvation = -175.517871 kcal Electronic energy + Delta-G solvation = -27309.874298 eV Core-core repulsion = 22665.480049 eV Total energy + Delta-G solvation = -4644.394248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.32847 -49.96385 -48.31910 -41.19555 -40.43054 -38.69422 -37.48023 -36.12559 -33.89431 -33.05071 -31.76710 -29.39841 -28.82849 -27.03871 -25.98861 -24.17349 -23.09475 -20.90438 -20.18982 -19.72619 -19.26389 -18.92227 -18.21521 -18.08646 -17.72886 -17.53423 -16.88428 -16.76590 -16.46299 -16.04585 -15.61981 -15.39885 -15.25067 -15.00976 -14.85425 -14.68140 -14.62928 -14.49126 -14.39817 -14.05010 -13.77585 -13.49040 -13.34347 -13.17152 -12.97250 -12.79419 -12.69699 -12.64790 -12.29048 -12.15521 -12.09471 -12.01736 -11.08380 -10.45285 -10.01407 -9.88955 -9.38762 -8.38134 -5.93384 0.02981 0.05130 1.41348 1.47969 1.50062 1.59233 1.85249 2.09169 2.29643 2.33731 2.43436 2.51094 3.01994 3.04577 3.24297 3.44277 3.55695 3.64034 3.67605 3.72745 3.93197 4.13865 4.17257 4.29054 4.40540 4.59924 4.67856 4.80444 4.95758 4.97941 5.02066 5.32562 5.44029 5.51689 5.88243 6.07470 6.43167 7.05066 7.16161 7.39274 7.96378 8.65168 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019189 B = 0.003080 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.799747 B = 9088.270630 C = 9705.044945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.257 3.743 3 C 0.219 3.781 4 N -0.455 5.455 5 C -0.338 4.338 6 H 0.081 0.919 7 C 0.007 3.993 8 N -0.892 5.892 9 Si 0.983 3.017 10 H -0.258 1.258 11 H -0.289 1.289 12 H -0.280 1.280 13 C 0.453 3.547 14 O -0.611 6.611 15 C -0.091 4.091 16 C -0.054 4.054 17 C -0.073 4.073 18 C -0.163 4.163 19 C 0.061 3.939 20 O -0.328 6.328 21 C 0.407 3.593 22 F -0.204 7.204 23 F -0.209 7.209 24 C 0.064 3.936 25 F -0.141 7.141 26 C -0.120 4.120 27 H 0.124 0.876 28 H 0.147 0.853 29 H 0.273 0.727 30 H 0.100 0.900 31 H 0.146 0.854 32 H 0.163 0.837 33 H 0.157 0.843 34 H 0.239 0.761 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.551 -18.109 -2.103 20.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.060 4.060 3 C 0.093 3.907 4 N -0.176 5.176 5 C -0.466 4.466 6 H 0.098 0.902 7 C -0.195 4.195 8 N -0.531 5.531 9 Si 0.808 3.192 10 H -0.183 1.183 11 H -0.215 1.215 12 H -0.205 1.205 13 C 0.244 3.756 14 O -0.496 6.496 15 C -0.130 4.130 16 C -0.055 4.055 17 C -0.091 4.091 18 C -0.181 4.181 19 C 0.016 3.984 20 O -0.246 6.246 21 C 0.318 3.682 22 F -0.186 7.186 23 F -0.190 7.190 24 C 0.044 3.956 25 F -0.120 7.120 26 C -0.138 4.138 27 H 0.141 0.859 28 H 0.164 0.836 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.163 0.837 32 H 0.180 0.820 33 H 0.174 0.826 34 H 0.254 0.746 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.843 -18.088 -1.501 19.397 hybrid contribution 0.290 1.296 0.660 1.483 sum 7.133 -16.792 -0.841 18.263 Atomic orbital electron populations 1.80919 1.14920 1.13538 1.09769 1.29853 0.95900 0.89058 0.91227 1.19160 0.79909 1.06720 0.84926 1.43810 1.56810 1.05207 1.11737 1.19586 1.30700 0.84283 1.11998 0.90155 1.25809 0.95149 1.01283 0.97263 1.69931 1.20266 1.26536 1.36371 0.85082 0.78202 0.77193 0.78764 1.18260 1.21505 1.20525 1.20860 0.82487 0.85126 0.87161 1.90559 1.51438 1.86895 1.20659 1.20708 1.04991 0.88331 0.99002 1.19329 0.93476 0.95528 0.97195 1.21208 0.96559 0.93366 0.98011 1.21557 0.98624 0.99641 0.98304 1.18865 0.94176 0.89596 0.95724 1.86643 1.34813 1.40495 1.62687 1.24330 0.73128 0.89026 0.81718 1.93081 1.93586 1.90292 1.41621 1.93093 1.65027 1.70444 1.90480 1.16985 0.84201 0.97107 0.97291 1.91459 1.59431 1.88158 1.72932 1.21007 1.01676 0.94672 0.96492 0.85864 0.83586 0.91653 0.88202 0.83670 0.81951 0.82563 0.74558 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.04 18.54 20.01 0.37 -22.67 16 2 C 0.26 10.44 12.97 89.44 1.16 11.59 16 3 C 0.22 7.59 4.91 84.57 0.42 8.00 16 4 N -0.46 -19.70 2.60 -645.41 -1.68 -21.38 16 5 C -0.34 -16.98 9.32 84.04 0.78 -16.20 16 6 H 0.08 4.42 7.39 -2.91 -0.02 4.40 16 7 C 0.01 0.34 4.87 84.93 0.41 0.75 16 8 N -0.89 -43.34 9.48 21.66 0.21 -43.14 16 9 Si 0.98 39.34 29.60 68.60 2.03 41.38 16 10 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 11 H -0.29 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 13 C 0.45 18.88 7.56 87.66 0.66 19.54 16 14 O -0.61 -31.12 15.68 -3.05 -0.05 -31.17 16 15 C -0.09 -2.62 4.43 29.10 0.13 -2.49 16 16 C -0.05 -1.63 4.37 -19.86 -0.09 -1.72 16 17 C -0.07 -1.91 9.69 22.26 0.22 -1.69 16 18 C -0.16 -4.18 8.26 22.36 0.18 -3.99 16 19 C 0.06 1.72 6.49 22.53 0.15 1.87 16 20 O -0.33 -7.76 10.30 -93.09 -0.96 -8.72 16 21 C 0.41 5.97 5.98 113.37 0.68 6.65 16 22 F -0.20 -3.41 15.58 44.97 0.70 -2.71 16 23 F -0.21 -4.00 15.58 44.97 0.70 -3.30 16 24 C 0.06 2.04 7.31 22.45 0.16 2.21 16 25 F -0.14 -4.65 17.11 44.97 0.77 -3.88 16 26 C -0.12 -3.84 9.67 22.30 0.22 -3.63 16 27 H 0.12 4.46 6.46 -2.39 -0.02 4.45 16 28 H 0.15 3.21 6.67 -2.39 -0.02 3.19 16 29 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 30 H 0.10 2.79 7.47 -2.39 -0.02 2.77 16 31 H 0.15 2.78 7.35 -2.38 -0.02 2.76 16 32 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 33 H 0.16 3.40 5.10 -2.91 -0.01 3.39 16 34 H 0.24 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -72.48 324.63 8.35 -64.13 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 1.18 Total: 10.55 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: 5.08 Total: 20.91 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -1.10 Total: -87.19 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -1.01 Total: -39.89 kcal Atomic # 9 Polarization: -12.06 SS G_CDS: 2.17 Total: -9.88 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.38 kcal Total: -72.48 8.35 -64.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448844053.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.391 kcal (2) G-P(sol) polarization free energy of solvation -72.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds