Wall clock time and date at job start Tue Mar 31 2020 14:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31591 * 122.22972 * 2 1 4 4 C 1.29943 * 117.14086 * 179.97438 * 3 2 1 5 5 N 1.38891 * 125.36812 * 179.97438 * 4 3 2 6 6 C 1.34773 * 120.00262 * 179.97438 * 5 4 3 7 7 O 1.21293 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00046 * 179.72573 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27842 * 8 6 5 10 10 O 1.42907 * 112.85106 * 53.80065 * 9 8 6 11 11 C 1.53777 * 113.61260 * 282.49840 * 9 8 6 12 12 C 1.53787 * 87.08094 * 220.01703 * 11 9 8 13 13 C 1.53776 * 87.07834 * 25.43132 * 12 11 9 14 14 S 1.76142 * 109.26868 * 0.24053 * 4 3 2 15 15 C 1.34653 * 122.23043 * 179.97438 * 2 1 3 16 16 S 1.76192 * 125.93248 * 0.02636 * 15 2 1 17 17 C 1.76202 * 99.99985 * 179.97438 * 16 15 2 18 18 H 1.07999 * 120.00216 * 0.02562 * 17 16 15 19 19 C 1.38437 * 119.99853 * 179.97438 * 17 16 15 20 20 N 1.31808 * 119.99542 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00141 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47546 * 89.99436 * 21 19 17 23 23 H 1.48495 * 109.47005 * 209.99926 * 21 19 17 24 24 H 1.48510 * 109.46864 * 329.99314 * 21 19 17 25 25 H 1.09003 * 109.46722 * 90.02651 * 1 2 3 26 26 H 1.08994 * 109.46895 * 210.02466 * 1 2 3 27 27 H 1.08995 * 109.47084 * 330.02886 * 1 2 3 28 28 H 0.97000 * 120.00214 * 0.02562 * 5 4 3 29 29 H 1.09003 * 109.47174 * 300.27142 * 8 6 5 30 30 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 31 31 H 0.96700 * 113.99847 * 309.67207 * 10 9 8 32 32 H 1.08996 * 113.61656 * 334.56734 * 11 9 8 33 33 H 1.09004 * 113.61701 * 105.47060 * 11 9 8 34 34 H 1.09001 * 113.61182 * 270.88631 * 12 11 9 35 35 H 1.08996 * 113.61161 * 139.97975 * 12 11 9 36 36 H 1.08998 * 113.61459 * 220.01883 * 13 12 11 37 37 H 1.09006 * 113.61508 * 89.11634 * 13 12 11 38 38 H 0.97007 * 119.99508 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9979 0.0005 5 7 4.4044 2.0547 0.0001 6 6 5.7297 1.8102 0.0012 7 8 6.1355 0.6671 0.0022 8 6 6.7075 2.9568 -0.0055 9 6 8.1361 2.4089 -0.0096 10 8 8.3716 1.4813 -1.0709 11 6 8.6074 1.9071 1.3654 12 6 9.9705 2.5416 1.0422 13 6 9.2144 3.4991 0.1062 14 16 3.9346 -0.7098 -0.0059 15 6 2.2252 -1.1390 0.0005 16 16 1.5698 -2.7745 0.0006 17 6 3.0667 -3.7040 0.0006 18 1 4.0189 -3.1943 0.0010 19 6 3.0223 -5.0877 0.0012 20 7 4.1421 -5.7829 0.0007 21 14 1.3755 -5.9693 0.0012 22 1 0.9392 -6.2035 -1.3987 23 1 1.5113 -7.2716 0.7018 24 1 0.3667 -5.1337 0.7009 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3633 0.8902 0.5134 28 1 4.0799 2.9688 -0.0003 29 1 6.5489 3.5644 -0.8965 30 1 6.5558 3.5690 0.8835 31 1 7.7093 0.7796 -1.1342 32 1 8.0933 2.3796 2.2024 33 1 8.6397 0.8206 1.4462 34 1 10.6523 1.8694 0.5212 35 1 10.4336 3.0389 1.8944 36 1 9.7367 3.6979 -0.8296 37 1 8.8662 4.4070 0.5989 38 1 4.1110 -6.7525 0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448853082.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:41 Heat of formation + Delta-G solvation = -28.334499 kcal Electronic energy + Delta-G solvation = -22897.353974 eV Core-core repulsion = 19379.395638 eV Total energy + Delta-G solvation = -3517.958336 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.83043 -39.23987 -38.47097 -35.04430 -34.41553 -32.78567 -31.34475 -30.07486 -27.20390 -25.93309 -25.92283 -24.62369 -22.83026 -21.24556 -19.84291 -19.75873 -18.16946 -17.80433 -16.89661 -16.48168 -16.02883 -15.84944 -15.39716 -15.23757 -15.11893 -14.49697 -14.30177 -14.02767 -13.25399 -13.24857 -13.05657 -12.80893 -12.51688 -12.17923 -12.05340 -11.78596 -11.61014 -11.43010 -11.37609 -11.31000 -11.03600 -10.94443 -10.70358 -10.47401 -10.16532 -9.93732 -9.80552 -9.50762 -9.21741 -8.90532 -8.82056 -7.94081 -6.77519 -6.58534 -4.32172 1.23175 1.74044 2.29180 2.40245 2.69942 2.84049 3.08341 3.17582 3.34385 3.47446 3.92581 4.00383 4.21476 4.35055 4.39688 4.45030 4.65034 4.81566 4.85631 4.99051 5.06671 5.15412 5.38794 5.43073 5.56903 5.72742 5.81939 5.96337 5.97976 6.04724 6.08797 6.19227 6.29174 6.34573 6.80781 7.01325 7.62501 7.64230 7.91611 8.20421 8.37140 8.81044 10.49243 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.003516 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.033593 B = 7960.956808 C = 9458.375655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.030 3.970 3 N -0.479 5.479 4 C 0.186 3.814 5 N -0.613 5.613 6 C 0.509 3.491 7 O -0.507 6.507 8 C -0.154 4.154 9 C 0.127 3.873 10 O -0.547 6.547 11 C -0.164 4.164 12 C -0.135 4.135 13 C -0.126 4.126 14 S 0.234 5.766 15 C -0.238 4.238 16 S 0.057 5.943 17 C -0.546 4.546 18 H 0.105 0.895 19 C 0.102 3.898 20 N -0.856 5.856 21 Si 0.852 3.148 22 H -0.261 1.261 23 H -0.265 1.265 24 H -0.236 1.236 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.416 0.584 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.393 0.607 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.815 18.130 1.410 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.112 4.112 3 N -0.201 5.201 4 C -0.184 4.184 5 N -0.261 5.261 6 C 0.296 3.704 7 O -0.383 6.383 8 C -0.195 4.195 9 C 0.085 3.915 10 O -0.359 6.359 11 C -0.202 4.202 12 C -0.172 4.172 13 C -0.164 4.164 14 S 0.480 5.520 15 C -0.474 4.474 16 S 0.305 5.695 17 C -0.694 4.694 18 H 0.123 0.877 19 C -0.109 4.109 20 N -0.489 5.489 21 Si 0.675 3.325 22 H -0.185 1.185 23 H -0.189 1.189 24 H -0.160 1.160 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.253 0.747 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.248 0.752 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.334 16.891 1.299 17.487 hybrid contribution -0.867 0.081 0.114 0.878 sum 3.468 16.972 1.412 17.381 Atomic orbital electron populations 1.20150 0.87977 1.02229 1.01941 1.19106 0.96803 0.84585 1.10723 1.65856 1.02932 1.32237 1.19076 1.24002 0.90065 0.93512 1.10791 1.42477 1.04477 1.08183 1.71006 1.20981 0.81876 0.91540 0.76032 1.90583 1.76668 1.22741 1.48282 1.22334 0.94357 0.96910 1.05871 1.21814 0.90068 0.91132 0.88495 1.86347 1.55925 1.42642 1.51027 1.23610 0.96989 1.02555 0.97030 1.22737 0.96664 0.98591 0.99200 1.23051 0.96343 0.96230 1.00763 1.86130 1.00601 0.94188 1.71101 1.28186 1.01718 1.04539 1.12997 1.82480 1.13471 0.89109 1.84475 1.22665 0.92372 0.94510 1.59902 0.87742 1.24742 0.97386 0.96228 0.92575 1.70010 1.26467 1.07720 1.44693 0.86817 0.83836 0.81399 0.80406 1.18521 1.18944 1.16002 0.91682 0.91074 0.91712 0.74671 0.87409 0.87148 0.75224 0.89785 0.90153 0.89708 0.91404 0.90410 0.88903 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.03 10.02 36.01 0.36 -0.67 16 2 C 0.03 0.60 6.73 -83.96 -0.57 0.03 16 3 N -0.48 -9.10 10.55 -9.78 -0.10 -9.20 16 4 C 0.19 3.37 8.40 -87.20 -0.73 2.64 16 5 N -0.61 -8.07 5.40 -11.78 -0.06 -8.13 16 6 C 0.51 6.45 7.55 -10.99 -0.08 6.37 16 7 O -0.51 -8.28 11.11 -14.27 -0.16 -8.43 16 8 C -0.15 -1.29 5.34 -27.88 -0.15 -1.44 16 9 C 0.13 1.32 1.10 -89.81 -0.10 1.22 16 10 O -0.55 -7.41 13.39 -55.05 -0.74 -8.15 16 11 C -0.16 -1.71 7.17 -25.92 -0.19 -1.89 16 12 C -0.13 -1.21 8.02 -25.92 -0.21 -1.41 16 13 C -0.13 -1.03 7.47 -25.92 -0.19 -1.22 16 14 S 0.23 5.00 18.35 -107.50 -1.97 3.03 16 15 C -0.24 -5.27 6.67 29.46 0.20 -5.08 16 16 S 0.06 1.34 18.70 -107.50 -2.01 -0.67 16 17 C -0.55 -15.01 9.80 30.81 0.30 -14.71 16 18 H 0.10 3.07 6.21 -52.49 -0.33 2.75 16 19 C 0.10 2.80 5.49 -17.49 -0.10 2.70 16 20 N -0.86 -24.48 13.98 55.47 0.78 -23.71 16 21 Si 0.85 19.48 27.73 -169.99 -4.71 14.76 16 22 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.24 -5.15 6.73 56.52 0.38 -4.77 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.07 1.14 7.37 -51.93 -0.38 0.76 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.42 3.98 8.82 -40.82 -0.36 3.62 16 29 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.11 0.62 8.05 -51.93 -0.42 0.20 16 31 H 0.39 5.64 6.19 45.56 0.28 5.92 16 32 H 0.08 0.75 8.03 -51.93 -0.42 0.33 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.53 8.10 -51.93 -0.42 0.10 16 38 H 0.28 7.28 8.32 -40.82 -0.34 6.94 16 LS Contribution 342.03 15.07 5.15 5.15 Total: -1.00 -31.76 342.03 -9.44 -41.20 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.16 Total: 7.60 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -1.45 Total: -13.46 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.61 Total: -41.04 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.90 Total: -16.58 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.76 kcal Atomic # 16 Polarization: 6.35 SS G_CDS: -3.98 Total: 2.36 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.76 -9.44 -41.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448853082.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.867 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds