Wall clock time and date at job start Tue Mar 31 2020 14:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31591 * 122.22972 * 2 1 4 4 C 1.29943 * 117.14086 * 179.97438 * 3 2 1 5 5 N 1.38891 * 125.36812 * 179.97438 * 4 3 2 6 6 C 1.34773 * 120.00262 * 179.97438 * 5 4 3 7 7 O 1.21293 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00046 * 179.72573 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27842 * 8 6 5 10 10 O 1.42907 * 112.85106 * 53.80065 * 9 8 6 11 11 C 1.53777 * 113.61260 * 282.49840 * 9 8 6 12 12 C 1.53787 * 87.08094 * 220.01703 * 11 9 8 13 13 C 1.53776 * 87.07834 * 25.43132 * 12 11 9 14 14 S 1.76142 * 109.26868 * 0.24053 * 4 3 2 15 15 C 1.34653 * 122.23043 * 179.97438 * 2 1 3 16 16 S 1.76192 * 125.93248 * 0.02636 * 15 2 1 17 17 C 1.76202 * 99.99985 * 179.97438 * 16 15 2 18 18 H 1.07999 * 120.00216 * 0.02562 * 17 16 15 19 19 C 1.38437 * 119.99853 * 179.97438 * 17 16 15 20 20 N 1.31808 * 119.99542 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00141 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47546 * 89.99436 * 21 19 17 23 23 H 1.48495 * 109.47005 * 209.99926 * 21 19 17 24 24 H 1.48510 * 109.46864 * 329.99314 * 21 19 17 25 25 H 1.09003 * 109.46722 * 90.02651 * 1 2 3 26 26 H 1.08994 * 109.46895 * 210.02466 * 1 2 3 27 27 H 1.08995 * 109.47084 * 330.02886 * 1 2 3 28 28 H 0.97000 * 120.00214 * 0.02562 * 5 4 3 29 29 H 1.09003 * 109.47174 * 300.27142 * 8 6 5 30 30 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 31 31 H 0.96700 * 113.99847 * 309.67207 * 10 9 8 32 32 H 1.08996 * 113.61656 * 334.56734 * 11 9 8 33 33 H 1.09004 * 113.61701 * 105.47060 * 11 9 8 34 34 H 1.09001 * 113.61182 * 270.88631 * 12 11 9 35 35 H 1.08996 * 113.61161 * 139.97975 * 12 11 9 36 36 H 1.08998 * 113.61459 * 220.01883 * 13 12 11 37 37 H 1.09006 * 113.61508 * 89.11634 * 13 12 11 38 38 H 0.97007 * 119.99508 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9979 0.0005 5 7 4.4044 2.0547 0.0001 6 6 5.7297 1.8102 0.0012 7 8 6.1355 0.6671 0.0022 8 6 6.7075 2.9568 -0.0055 9 6 8.1361 2.4089 -0.0096 10 8 8.3716 1.4813 -1.0709 11 6 8.6074 1.9071 1.3654 12 6 9.9705 2.5416 1.0422 13 6 9.2144 3.4991 0.1062 14 16 3.9346 -0.7098 -0.0059 15 6 2.2252 -1.1390 0.0005 16 16 1.5698 -2.7745 0.0006 17 6 3.0667 -3.7040 0.0006 18 1 4.0189 -3.1943 0.0010 19 6 3.0223 -5.0877 0.0012 20 7 4.1421 -5.7829 0.0007 21 14 1.3755 -5.9693 0.0012 22 1 0.9392 -6.2035 -1.3987 23 1 1.5113 -7.2716 0.7018 24 1 0.3667 -5.1337 0.7009 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3633 0.8902 0.5134 28 1 4.0799 2.9688 -0.0003 29 1 6.5489 3.5644 -0.8965 30 1 6.5558 3.5690 0.8835 31 1 7.7093 0.7796 -1.1342 32 1 8.0933 2.3796 2.2024 33 1 8.6397 0.8206 1.4462 34 1 10.6523 1.8694 0.5212 35 1 10.4336 3.0389 1.8944 36 1 9.7367 3.6979 -0.8296 37 1 8.8662 4.4070 0.5989 38 1 4.1110 -6.7525 0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448853082.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:40 Heat of formation + Delta-G solvation = -50.687265 kcal Electronic energy + Delta-G solvation = -22898.323263 eV Core-core repulsion = 19379.395638 eV Total energy + Delta-G solvation = -3518.927624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.88734 -40.50689 -39.67775 -36.27547 -35.41176 -34.83016 -32.54033 -31.14738 -28.79798 -27.91165 -26.65758 -25.78165 -23.91310 -22.51988 -21.30712 -20.58223 -19.81467 -19.22837 -18.17400 -17.66155 -17.25857 -17.15735 -17.11131 -16.38387 -16.08316 -15.82594 -15.63178 -15.20822 -14.98824 -14.49055 -14.13642 -13.94955 -13.52916 -13.43266 -13.39601 -13.20999 -13.18639 -13.09527 -12.57257 -12.44200 -12.19395 -12.07646 -11.94253 -11.76955 -11.55320 -11.31271 -11.13527 -10.82351 -10.65558 -10.60021 -10.55382 -9.61445 -8.62456 -8.54324 -6.35568 -0.29943 0.15395 0.75555 1.04968 1.13547 1.28266 1.38543 1.50648 1.65566 1.96769 2.13219 2.50227 2.76545 3.11322 3.29028 3.59852 3.61896 3.72183 3.92183 4.09596 4.36390 4.37424 4.46868 4.65930 4.68211 4.80291 4.83842 4.86711 4.92645 5.02396 5.06539 5.15308 5.29262 5.42928 5.45625 5.59796 5.89695 6.06771 6.57998 6.75979 6.77576 6.88155 8.50045 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.003516 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.033593 B = 7960.956808 C = 9458.375655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.052 3.948 3 N -0.486 5.486 4 C 0.231 3.769 5 N -0.600 5.600 6 C 0.507 3.493 7 O -0.541 6.541 8 C -0.140 4.140 9 C 0.107 3.893 10 O -0.569 6.569 11 C -0.172 4.172 12 C -0.137 4.137 13 C -0.110 4.110 14 S 0.169 5.831 15 C -0.278 4.278 16 S 0.059 5.941 17 C -0.567 4.567 18 H 0.068 0.932 19 C 0.049 3.951 20 N -0.907 5.907 21 Si 0.913 3.087 22 H -0.253 1.253 23 H -0.254 1.254 24 H -0.219 1.219 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.439 0.561 29 H 0.139 0.861 30 H 0.154 0.846 31 H 0.384 0.616 32 H 0.105 0.895 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.131 0.869 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.278 22.136 1.808 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 N -0.208 5.208 4 C -0.142 4.142 5 N -0.252 5.252 6 C 0.296 3.704 7 O -0.419 6.419 8 C -0.179 4.179 9 C 0.066 3.934 10 O -0.380 6.380 11 C -0.209 4.209 12 C -0.174 4.174 13 C -0.147 4.147 14 S 0.415 5.585 15 C -0.513 4.513 16 S 0.304 5.696 17 C -0.715 4.715 18 H 0.086 0.914 19 C -0.158 4.158 20 N -0.543 5.543 21 Si 0.732 3.268 22 H -0.177 1.177 23 H -0.178 1.178 24 H -0.142 1.142 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.281 0.719 29 H 0.157 0.843 30 H 0.171 0.829 31 H 0.237 0.763 32 H 0.123 0.877 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.149 0.851 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.822 20.982 1.700 21.239 hybrid contribution -0.175 -0.783 0.001 0.802 sum 2.646 20.199 1.701 20.443 Atomic orbital electron populations 1.20320 0.85210 1.03511 1.03453 1.19826 0.98645 0.83974 1.06486 1.66090 1.02675 1.31190 1.20844 1.24318 0.90414 0.93375 1.06070 1.42671 1.04006 1.08008 1.70483 1.22060 0.81902 0.92312 0.74120 1.90612 1.77023 1.24984 1.49266 1.22455 0.90943 0.95178 1.09325 1.22238 0.92284 0.91491 0.87410 1.86336 1.56074 1.43104 1.52502 1.23692 0.98630 1.00494 0.98130 1.22733 0.95831 0.98673 1.00163 1.23099 0.94630 0.96433 1.00531 1.86502 1.01887 0.97628 1.72459 1.28115 1.01756 1.04449 1.16995 1.81916 1.10843 0.89547 1.87334 1.22846 0.93259 0.95432 1.59992 0.91373 1.25714 1.01289 0.96875 0.91903 1.70120 1.29062 1.08252 1.46851 0.85905 0.79321 0.80501 0.81029 1.17687 1.17834 1.14230 0.89901 0.90901 0.89290 0.71896 0.84326 0.82865 0.76259 0.87700 0.93898 0.91808 0.89313 0.90757 0.85063 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.95 10.02 71.24 0.71 -1.24 16 2 C 0.05 1.99 6.73 41.77 0.28 2.27 16 3 N -0.49 -17.29 10.55 -184.87 -1.95 -19.24 16 4 C 0.23 7.99 8.40 179.15 1.50 9.49 16 5 N -0.60 -14.02 5.40 -309.57 -1.67 -15.69 16 6 C 0.51 11.79 7.55 87.66 0.66 12.45 16 7 O -0.54 -17.94 11.11 15.88 0.18 -17.76 16 8 C -0.14 -1.76 5.34 29.85 0.16 -1.60 16 9 C 0.11 2.00 1.10 -10.27 -0.01 1.99 16 10 O -0.57 -15.57 13.39 -130.03 -1.74 -17.31 16 11 C -0.17 -3.40 7.17 31.12 0.22 -3.18 16 12 C -0.14 -2.24 8.02 31.12 0.25 -1.99 16 13 C -0.11 -1.40 7.47 31.12 0.23 -1.17 16 14 S 0.17 7.49 18.35 -56.49 -1.04 6.45 16 15 C -0.28 -12.47 6.67 67.00 0.45 -12.02 16 16 S 0.06 2.80 18.70 -56.49 -1.06 1.75 16 17 C -0.57 -32.84 9.80 67.87 0.67 -32.18 16 18 H 0.07 4.33 6.21 -2.91 -0.02 4.32 16 19 C 0.05 2.79 5.49 84.74 0.47 3.26 16 20 N -0.91 -54.70 13.98 21.59 0.30 -54.40 16 21 Si 0.91 40.84 27.73 68.60 1.90 42.74 16 22 H -0.25 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.25 -10.79 7.11 99.48 0.71 -10.09 16 24 H -0.22 -9.11 6.73 99.48 0.67 -8.44 16 25 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.07 2.18 7.37 -2.39 -0.02 2.16 16 27 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.44 6.38 8.82 -92.71 -0.82 5.57 16 29 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.15 0.73 8.05 -2.39 -0.02 0.71 16 31 H 0.38 11.66 6.19 -74.06 -0.46 11.20 16 32 H 0.10 1.59 8.03 -2.39 -0.02 1.57 16 33 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.13 0.71 8.10 -2.38 -0.02 0.69 16 38 H 0.28 15.51 8.32 -92.70 -0.77 14.74 16 Total: -1.00 -75.50 342.03 0.32 -75.18 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -0.19 Total: 22.18 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 5.59 Total: -23.91 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -3.32 Total: -89.32 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -1.57 Total: -35.07 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 1.90 Total: 42.74 kcal Atomic # 16 Polarization: 10.29 SS G_CDS: -2.09 Total: 8.20 kcal Total: -75.50 0.32 -75.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448853082.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.490 kcal (2) G-P(sol) polarization free energy of solvation -75.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds