Wall clock time and date at job start Tue Mar 31 2020 15:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86793 * 120.00363 * 2 1 4 4 H 1.48502 * 109.47302 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47210 * 300.00110 * 3 2 1 6 6 H 1.48505 * 109.47231 * 60.00072 * 3 2 1 7 7 C 1.40043 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99794 * 196.94580 * 7 2 1 9 9 C 1.41544 * 119.99528 * 16.93992 * 7 2 1 10 10 C 1.41185 * 120.99070 * 203.59657 * 9 7 2 11 11 C 1.37584 * 119.02122 * 179.97438 * 10 9 7 12 12 N 1.32084 * 121.11155 * 0.02562 * 11 10 9 13 13 C 1.32484 * 122.22979 * 0.02562 * 12 11 10 14 14 N 1.39344 * 119.58473 * 179.97438 * 13 12 11 15 15 C 1.34782 * 120.00089 * 5.23719 * 14 13 12 16 16 O 1.21699 * 119.99439 * 355.14708 * 15 14 13 17 17 C 1.46367 * 119.99956 * 175.14457 * 15 14 13 18 18 C 1.34843 * 119.99507 * 179.97438 * 17 15 14 19 19 C 1.47204 * 119.99753 * 179.97438 * 18 17 15 20 20 C 1.39862 * 120.16185 * 0.20882 * 19 18 17 21 21 C 1.37884 * 119.84852 * 180.23273 * 20 19 18 22 22 C 1.38401 * 120.18697 * 359.79043 * 21 20 19 23 23 C 1.38501 * 120.33005 * 359.97438 * 22 21 20 24 24 Cl 1.73601 * 119.92211 * 179.97438 * 23 22 21 25 25 C 1.38025 * 120.14843 * 359.97438 * 23 22 21 26 26 C 1.38643 * 120.83457 * 0.25197 * 13 12 11 27 27 H 0.97003 * 119.99597 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.48951 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.44431 * 180.02562 * 11 10 9 30 30 H 0.97002 * 119.99995 * 185.23041 * 14 13 12 31 31 H 1.08002 * 120.00224 * 359.97438 * 17 15 14 32 32 H 1.08002 * 120.00269 * 359.97438 * 18 17 15 33 33 H 1.07997 * 120.07685 * 359.97438 * 20 19 18 34 34 H 1.07996 * 119.90328 * 179.76968 * 21 20 19 35 35 H 1.08001 * 119.83432 * 179.97438 * 22 21 20 36 36 H 1.08001 * 120.09792 * 179.97438 * 25 23 22 37 37 H 1.07994 * 120.60341 * 179.71708 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3462 -0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8828 2.3964 1.2125 7 6 2.0076 -1.2128 -0.0005 8 1 3.0523 -1.2332 0.2720 9 6 1.3458 -2.4118 -0.3583 10 6 1.8232 -3.6651 0.0828 11 6 1.1481 -4.8049 -0.2887 12 7 0.0683 -4.7421 -1.0467 13 6 -0.4197 -3.5919 -1.4874 14 7 -1.5625 -3.5898 -2.2847 15 6 -2.2249 -4.7406 -2.5161 16 8 -1.7770 -5.7940 -2.1030 17 6 -3.4829 -4.7231 -3.2642 18 6 -4.1453 -5.8746 -3.4961 19 6 -5.4107 -5.8570 -4.2479 20 6 -5.9268 -4.6486 -4.7270 21 6 -7.1151 -4.6391 -5.4263 22 6 -7.7953 -5.8218 -5.6588 23 6 -7.2886 -7.0234 -5.1920 24 17 -8.1509 -8.5005 -5.4890 25 6 -6.0997 -7.0489 -4.4913 26 6 0.1956 -2.3907 -1.1700 27 1 -0.4850 0.8401 0.0004 28 1 2.7049 -3.7282 0.7032 29 1 1.5071 -5.7672 0.0451 30 1 -1.8814 -2.7601 -2.6730 31 1 -3.8805 -3.7882 -3.6303 32 1 -3.7474 -6.8096 -3.1303 33 1 -5.3979 -3.7246 -4.5460 34 1 -7.5163 -3.7061 -5.7934 35 1 -8.7258 -5.8077 -6.2068 36 1 -5.7056 -7.9863 -4.1274 37 1 -0.2028 -1.4556 -1.5350 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492110060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:13 Heat of formation + Delta-G solvation = 34.883868 kcal Electronic energy + Delta-G solvation = -22839.029473 eV Core-core repulsion = 19186.324834 eV Total energy + Delta-G solvation = -3652.704639 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.86442 -39.41200 -37.82598 -36.84319 -34.49516 -33.99843 -33.74804 -31.30256 -30.61041 -29.97063 -28.49188 -26.03355 -24.67344 -23.09885 -22.18170 -21.90842 -20.40882 -19.21909 -17.85159 -17.55720 -16.98274 -15.98198 -15.67193 -15.51572 -15.15618 -14.52297 -14.42203 -14.23995 -14.00249 -13.91569 -13.75046 -13.67542 -12.85155 -12.64809 -12.41496 -12.36986 -12.03059 -11.94607 -11.54155 -11.49424 -11.24133 -11.19166 -10.92973 -10.46604 -10.31312 -10.18134 -9.78247 -9.50370 -9.38063 -9.19903 -8.53720 -8.03627 -7.76033 -7.05893 -6.84822 -4.64329 0.27310 0.83674 1.75973 1.79069 2.68383 2.75405 2.99362 3.04830 3.20638 3.36097 3.59952 3.81805 3.85268 4.38865 4.40289 4.62867 4.64254 4.78296 4.94947 4.97923 5.17362 5.35950 5.50374 5.65622 5.73693 5.81277 5.91276 5.94878 6.22387 6.36810 6.39195 6.55818 6.63932 6.78502 6.91675 7.06756 7.35733 7.42633 7.74668 7.90144 8.17966 8.39025 8.66798 8.71097 8.84424 9.66292 10.02477 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.023060 B = 0.002045 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.924963 B =13687.647598 C =14817.775723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.078 3.922 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.455 4.455 8 H 0.083 0.917 9 C 0.142 3.858 10 C -0.284 4.284 11 C 0.119 3.881 12 N -0.554 5.554 13 C 0.336 3.664 14 N -0.651 5.651 15 C 0.527 3.473 16 O -0.482 6.482 17 C -0.182 4.182 18 C -0.046 4.046 19 C -0.048 4.048 20 C -0.103 4.103 21 C -0.106 4.106 22 C -0.109 4.109 23 C -0.036 4.036 24 Cl -0.071 7.071 25 C -0.092 4.092 26 C -0.243 4.243 27 H 0.282 0.718 28 H 0.102 0.898 29 H 0.124 0.876 30 H 0.408 0.592 31 H 0.128 0.872 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.138 -4.757 -11.096 19.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.134 3.866 10 C -0.308 4.308 11 C -0.035 4.035 12 N -0.274 5.274 13 C 0.111 3.889 14 N -0.296 5.296 15 C 0.313 3.687 16 O -0.355 6.355 17 C -0.203 4.203 18 C -0.065 4.065 19 C -0.048 4.048 20 C -0.121 4.121 21 C -0.125 4.125 22 C -0.127 4.127 23 C -0.062 4.062 24 Cl -0.042 7.042 25 C -0.111 4.111 26 C -0.269 4.269 27 H 0.092 0.908 28 H 0.120 0.880 29 H 0.142 0.858 30 H 0.243 0.757 31 H 0.146 0.854 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.583 -6.310 -11.060 20.124 hybrid contribution 0.434 2.015 0.090 2.063 sum -15.149 -4.295 -10.970 19.191 Atomic orbital electron populations 1.69790 1.07712 1.29329 1.34401 1.25971 0.94772 1.01540 0.91858 0.86214 0.81068 0.80567 0.78646 1.18250 1.19601 1.19873 1.19613 0.97972 0.90684 1.40293 0.89891 1.17574 0.89846 0.92315 0.86851 1.21898 1.05253 0.93870 1.09737 1.21770 0.90921 0.96859 0.93991 1.67234 1.15486 1.26465 1.18169 1.18166 0.87245 0.90879 0.92592 1.43298 1.26218 1.10563 1.49548 1.18333 0.84629 0.84454 0.81236 1.90897 1.66831 1.29608 1.48116 1.23151 0.96310 0.99189 1.01610 1.22238 0.91270 0.99435 0.93602 1.18996 0.94847 0.92762 0.98212 1.21599 0.95860 0.97907 0.96703 1.21075 0.94953 0.97890 0.98543 1.21183 1.00617 0.90862 1.00070 1.20824 0.95075 0.87810 1.02499 1.98380 1.76400 1.34523 1.94884 1.21283 0.93293 0.98818 0.97710 1.21538 1.02598 0.95494 1.07226 0.90751 0.87955 0.85848 0.75665 0.85431 0.84252 0.84632 0.84688 0.84876 0.84299 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.07 10.93 55.55 0.61 -18.46 16 2 C 0.08 1.85 5.20 -17.34 -0.09 1.76 16 3 Si 0.91 17.60 29.59 -169.99 -5.03 12.57 16 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 5 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 7 C -0.45 -11.55 9.12 -37.65 -0.34 -11.89 16 8 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 9 C 0.14 3.72 5.60 -106.55 -0.60 3.12 16 10 C -0.28 -6.93 9.90 -38.70 -0.38 -7.32 16 11 C 0.12 2.85 11.15 -17.68 -0.20 2.65 16 12 N -0.55 -14.14 7.84 -12.54 -0.10 -14.24 16 13 C 0.34 8.09 7.41 -154.80 -1.15 6.95 16 14 N -0.65 -12.57 5.38 -12.77 -0.07 -12.64 16 15 C 0.53 9.80 7.70 -12.99 -0.10 9.70 16 16 O -0.48 -10.98 14.48 5.19 0.08 -10.90 16 17 C -0.18 -2.37 9.41 -37.52 -0.35 -2.72 16 18 C -0.05 -0.55 9.46 -37.15 -0.35 -0.90 16 19 C -0.05 -0.49 5.87 -105.06 -0.62 -1.10 16 20 C -0.10 -0.88 9.41 -39.10 -0.37 -1.25 16 21 C -0.11 -0.78 10.03 -39.65 -0.40 -1.18 16 22 C -0.11 -0.85 9.82 -39.42 -0.39 -1.23 16 23 C -0.04 -0.32 6.31 -39.56 -0.25 -0.57 16 24 Cl -0.07 -0.61 28.95 -51.86 -1.50 -2.11 16 25 C -0.09 -0.89 9.57 -39.07 -0.37 -1.26 16 26 C -0.24 -6.09 8.62 -38.47 -0.33 -6.42 16 27 H 0.28 6.13 8.29 -40.82 -0.34 5.79 16 28 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 29 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 30 H 0.41 6.31 8.67 -40.82 -0.35 5.96 16 31 H 0.13 1.23 6.07 -52.49 -0.32 0.91 16 32 H 0.14 1.80 7.52 -52.49 -0.39 1.40 16 33 H 0.14 0.95 6.17 -52.49 -0.32 0.63 16 34 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.13 3.14 6.21 -52.49 -0.33 2.82 16 LS Contribution 344.21 15.07 5.19 5.19 Total: -1.00 -31.40 344.21 -10.50 -41.90 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -3.38 Total: 10.38 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -6.29 Total: -11.68 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.44 Total: -45.34 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.08 Total: -10.90 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.40 -10.50 -41.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492110060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.782 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds