Wall clock time and date at job start Tue Mar 31 2020 15:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86793 * 120.00363 * 2 1 4 4 H 1.48502 * 109.47302 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47210 * 300.00110 * 3 2 1 6 6 H 1.48505 * 109.47231 * 60.00072 * 3 2 1 7 7 C 1.40043 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99794 * 196.94580 * 7 2 1 9 9 C 1.41544 * 119.99528 * 16.93992 * 7 2 1 10 10 C 1.41185 * 120.99070 * 203.59657 * 9 7 2 11 11 C 1.37584 * 119.02122 * 179.97438 * 10 9 7 12 12 N 1.32084 * 121.11155 * 0.02562 * 11 10 9 13 13 C 1.32484 * 122.22979 * 0.02562 * 12 11 10 14 14 N 1.39344 * 119.58473 * 179.97438 * 13 12 11 15 15 C 1.34782 * 120.00089 * 5.23719 * 14 13 12 16 16 O 1.21699 * 119.99439 * 355.14708 * 15 14 13 17 17 C 1.46367 * 119.99956 * 175.14457 * 15 14 13 18 18 C 1.34843 * 119.99507 * 179.97438 * 17 15 14 19 19 C 1.47204 * 119.99753 * 179.97438 * 18 17 15 20 20 C 1.39862 * 120.16185 * 0.20882 * 19 18 17 21 21 C 1.37884 * 119.84852 * 180.23273 * 20 19 18 22 22 C 1.38401 * 120.18697 * 359.79043 * 21 20 19 23 23 C 1.38501 * 120.33005 * 359.97438 * 22 21 20 24 24 Cl 1.73601 * 119.92211 * 179.97438 * 23 22 21 25 25 C 1.38025 * 120.14843 * 359.97438 * 23 22 21 26 26 C 1.38643 * 120.83457 * 0.25197 * 13 12 11 27 27 H 0.97003 * 119.99597 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.48951 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.44431 * 180.02562 * 11 10 9 30 30 H 0.97002 * 119.99995 * 185.23041 * 14 13 12 31 31 H 1.08002 * 120.00224 * 359.97438 * 17 15 14 32 32 H 1.08002 * 120.00269 * 359.97438 * 18 17 15 33 33 H 1.07997 * 120.07685 * 359.97438 * 20 19 18 34 34 H 1.07996 * 119.90328 * 179.76968 * 21 20 19 35 35 H 1.08001 * 119.83432 * 179.97438 * 22 21 20 36 36 H 1.08001 * 120.09792 * 179.97438 * 25 23 22 37 37 H 1.07994 * 120.60341 * 179.71708 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3462 -0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8828 2.3964 1.2125 7 6 2.0076 -1.2128 -0.0005 8 1 3.0523 -1.2332 0.2720 9 6 1.3458 -2.4118 -0.3583 10 6 1.8232 -3.6651 0.0828 11 6 1.1481 -4.8049 -0.2887 12 7 0.0683 -4.7421 -1.0467 13 6 -0.4197 -3.5919 -1.4874 14 7 -1.5625 -3.5898 -2.2847 15 6 -2.2249 -4.7406 -2.5161 16 8 -1.7770 -5.7940 -2.1030 17 6 -3.4829 -4.7231 -3.2642 18 6 -4.1453 -5.8746 -3.4961 19 6 -5.4107 -5.8570 -4.2479 20 6 -5.9268 -4.6486 -4.7270 21 6 -7.1151 -4.6391 -5.4263 22 6 -7.7953 -5.8218 -5.6588 23 6 -7.2886 -7.0234 -5.1920 24 17 -8.1509 -8.5005 -5.4890 25 6 -6.0997 -7.0489 -4.4913 26 6 0.1956 -2.3907 -1.1700 27 1 -0.4850 0.8401 0.0004 28 1 2.7049 -3.7282 0.7032 29 1 1.5071 -5.7672 0.0451 30 1 -1.8814 -2.7601 -2.6730 31 1 -3.8805 -3.7882 -3.6303 32 1 -3.7474 -6.8096 -3.1303 33 1 -5.3979 -3.7246 -4.5460 34 1 -7.5163 -3.7061 -5.7934 35 1 -8.7258 -5.8077 -6.2068 36 1 -5.7056 -7.9863 -4.1274 37 1 -0.2028 -1.4556 -1.5350 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492110060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:12 Heat of formation + Delta-G solvation = 18.613998 kcal Electronic energy + Delta-G solvation = -22839.734988 eV Core-core repulsion = 19186.324834 eV Total energy + Delta-G solvation = -3653.410154 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.27343 -40.34220 -39.50777 -37.53091 -36.17746 -35.49535 -34.99594 -32.48472 -31.96970 -31.09383 -29.99309 -27.92077 -25.76036 -23.89871 -23.79328 -23.30534 -21.86965 -20.48072 -19.49336 -18.68840 -18.11436 -17.37947 -17.01311 -16.52687 -16.25130 -16.09516 -16.06326 -15.79442 -15.28493 -14.95413 -14.61887 -14.58272 -14.39697 -14.35917 -14.15928 -13.33958 -13.19608 -12.92249 -12.77102 -12.66921 -12.61144 -12.27878 -12.07449 -11.90417 -11.86875 -11.52822 -11.27617 -11.15593 -11.09067 -9.96016 -9.86290 -9.61520 -9.37406 -8.85477 -8.64902 -6.56507 -0.57837 0.18354 0.67480 0.98670 1.08622 1.09532 1.42084 1.55676 1.58363 2.16692 2.20788 2.32527 2.73749 2.83690 3.44816 3.75014 3.75610 3.92533 3.96261 4.13666 4.22725 4.26899 4.35129 4.61817 4.73005 4.83757 4.86104 4.91340 4.96209 5.07397 5.15215 5.21795 5.28659 5.33996 5.47728 5.52582 5.63827 5.75233 5.90691 6.15091 6.47846 6.60131 6.78996 6.82625 7.29174 7.83753 8.25892 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.023060 B = 0.002045 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.924963 B =13687.647598 C =14817.775723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.040 3.960 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.266 1.266 7 C -0.483 4.483 8 H 0.083 0.917 9 C 0.112 3.888 10 C -0.299 4.299 11 C 0.112 3.888 12 N -0.580 5.580 13 C 0.332 3.668 14 N -0.645 5.645 15 C 0.524 3.476 16 O -0.533 6.533 17 C -0.195 4.195 18 C -0.021 4.021 19 C -0.069 4.069 20 C -0.100 4.100 21 C -0.104 4.104 22 C -0.102 4.102 23 C -0.049 4.049 24 Cl -0.072 7.072 25 C -0.100 4.100 26 C -0.260 4.260 27 H 0.293 0.707 28 H 0.115 0.885 29 H 0.149 0.851 30 H 0.425 0.575 31 H 0.167 0.833 32 H 0.123 0.877 33 H 0.154 0.846 34 H 0.167 0.833 35 H 0.155 0.845 36 H 0.139 0.861 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.806 -2.899 -12.403 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.178 4.178 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.185 1.185 6 H -0.191 1.191 7 C -0.514 4.514 8 H 0.102 0.898 9 C 0.104 3.896 10 C -0.323 4.323 11 C -0.041 4.041 12 N -0.301 5.301 13 C 0.106 3.894 14 N -0.292 5.292 15 C 0.314 3.686 16 O -0.409 6.409 17 C -0.215 4.215 18 C -0.041 4.041 19 C -0.069 4.069 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.076 4.076 24 Cl -0.043 7.043 25 C -0.118 4.118 26 C -0.285 4.285 27 H 0.104 0.896 28 H 0.133 0.867 29 H 0.166 0.834 30 H 0.263 0.737 31 H 0.185 0.815 32 H 0.141 0.859 33 H 0.172 0.828 34 H 0.184 0.816 35 H 0.172 0.828 36 H 0.157 0.843 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.286 -4.446 -12.388 21.726 hybrid contribution 0.797 1.344 0.451 1.627 sum -16.489 -3.102 -11.936 20.590 Atomic orbital electron populations 1.69812 1.09044 1.31056 1.33572 1.26833 0.95585 1.04599 0.90759 0.85072 0.79342 0.75684 0.79109 1.18275 1.18454 1.19060 1.19887 0.98274 0.91671 1.41534 0.89840 1.18021 0.90713 0.93338 0.87515 1.22077 1.06016 0.93727 1.10430 1.22215 0.90557 0.97933 0.93432 1.67365 1.16304 1.27193 1.19192 1.18440 0.88186 0.90311 0.92437 1.43315 1.24987 1.11980 1.48880 1.19181 0.85687 0.83247 0.80467 1.90862 1.68468 1.31169 1.50427 1.22927 0.94295 1.01294 1.03010 1.22288 0.91518 0.98478 0.91791 1.18895 0.94424 0.93897 0.99715 1.21887 0.96241 0.97779 0.95822 1.21446 0.94179 0.98952 0.97555 1.21547 1.01116 0.90438 0.98930 1.20952 0.95119 0.88443 1.03065 1.98380 1.76285 1.34735 1.94886 1.21371 0.93721 0.98878 0.97863 1.21528 1.03141 0.95742 1.08119 0.89561 0.86652 0.83364 0.73690 0.81536 0.85905 0.82813 0.81558 0.82781 0.84346 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.06 10.93 21.84 0.24 -38.82 16 2 C 0.04 1.87 5.20 85.29 0.44 2.32 16 3 Si 0.99 35.31 29.59 68.60 2.03 37.34 16 4 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 5 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 6 H -0.27 -9.14 7.11 99.48 0.71 -8.43 16 7 C -0.48 -24.92 9.12 23.52 0.21 -24.70 16 8 H 0.08 4.14 7.90 -2.91 -0.02 4.12 16 9 C 0.11 6.02 5.60 -21.12 -0.12 5.90 16 10 C -0.30 -14.99 9.90 22.84 0.23 -14.76 16 11 C 0.11 5.52 11.15 84.50 0.94 6.46 16 12 N -0.58 -30.45 7.84 -193.59 -1.52 -31.96 16 13 C 0.33 16.42 7.41 132.80 0.98 17.40 16 14 N -0.65 -25.17 5.38 -312.54 -1.68 -26.86 16 15 C 0.52 19.75 7.70 86.36 0.66 20.42 16 16 O -0.53 -25.12 14.48 -4.35 -0.06 -25.19 16 17 C -0.19 -4.89 9.41 23.61 0.22 -4.67 16 18 C -0.02 -0.49 9.46 23.85 0.23 -0.27 16 19 C -0.07 -1.29 5.87 -20.15 -0.12 -1.41 16 20 C -0.10 -1.40 9.41 22.58 0.21 -1.18 16 21 C -0.10 -1.12 10.03 22.22 0.22 -0.90 16 22 C -0.10 -1.27 9.82 22.37 0.22 -1.05 16 23 C -0.05 -0.80 6.31 22.28 0.14 -0.66 16 24 Cl -0.07 -1.15 28.95 -2.72 -0.08 -1.23 16 25 C -0.10 -1.82 9.57 22.60 0.22 -1.61 16 26 C -0.26 -13.36 8.62 22.99 0.20 -13.16 16 27 H 0.29 12.50 8.29 -92.71 -0.77 11.73 16 28 H 0.12 5.28 8.06 -2.91 -0.02 5.26 16 29 H 0.15 6.29 8.06 -2.91 -0.02 6.26 16 30 H 0.42 13.01 8.67 -92.71 -0.80 12.21 16 31 H 0.17 2.74 6.07 -2.91 -0.02 2.73 16 32 H 0.12 3.29 7.52 -2.91 -0.02 3.26 16 33 H 0.15 1.54 6.17 -2.91 -0.02 1.52 16 34 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 35 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 36 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 37 H 0.13 6.35 6.21 -2.91 -0.02 6.33 16 Total: -1.00 -69.99 344.21 4.16 -65.83 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.33 Total: 32.77 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 4.90 Total: -11.88 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -2.96 Total: -97.64 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.06 Total: -25.19 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.34 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -69.99 4.16 -65.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492110060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.448 kcal (2) G-P(sol) polarization free energy of solvation -69.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds