Wall clock time and date at job start Tue Mar 31 2020 15:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86793 * 120.00105 * 2 1 4 4 H 1.48502 * 109.47076 * 269.99865 * 3 2 1 5 5 H 1.48500 * 109.47586 * 29.99441 * 3 2 1 6 6 H 1.48504 * 109.47362 * 149.99556 * 3 2 1 7 7 C 1.40027 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00044 * 196.89519 * 7 2 1 9 9 C 1.41544 * 120.00091 * 16.89967 * 7 2 1 10 10 C 1.41189 * 120.99451 * 203.62314 * 9 7 2 11 11 C 1.37584 * 119.02304 * 179.97438 * 10 9 7 12 12 N 1.32084 * 121.11102 * 359.97438 * 11 10 9 13 13 C 1.32487 * 122.23174 * 0.02562 * 12 11 10 14 14 N 1.39350 * 119.58633 * 179.97438 * 13 12 11 15 15 C 1.34769 * 119.99736 * 5.21613 * 14 13 12 16 16 O 1.21714 * 120.00476 * 355.14565 * 15 14 13 17 17 C 1.46322 * 119.99892 * 175.14342 * 15 14 13 18 18 C 1.34890 * 120.00071 * 180.02562 * 17 15 14 19 19 C 1.47131 * 120.00160 * 180.02562 * 18 17 15 20 20 C 1.39887 * 120.18216 * 0.02562 * 19 18 17 21 21 C 1.37834 * 119.84231 * 179.97438 * 20 19 18 22 22 C 1.38458 * 120.20675 * 0.02562 * 21 20 19 23 23 C 1.38319 * 120.36828 * 359.97438 * 22 21 20 24 24 C 1.38081 * 120.15858 * 359.97438 * 23 22 21 25 25 Cl 1.73595 * 120.10633 * 180.02562 * 24 23 22 26 26 C 1.38640 * 120.83099 * 0.27233 * 13 12 11 27 27 H 0.96998 * 119.99789 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.48812 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.44172 * 180.02562 * 11 10 9 30 30 H 0.97001 * 119.99726 * 185.21949 * 14 13 12 31 31 H 1.08003 * 120.00235 * 359.97438 * 17 15 14 32 32 H 1.08004 * 120.00205 * 359.97438 * 18 17 15 33 33 H 1.08001 * 120.07398 * 359.95458 * 20 19 18 34 34 H 1.07994 * 119.89810 * 180.02562 * 21 20 19 35 35 H 1.07999 * 119.81879 * 180.27512 * 22 21 20 36 36 H 1.08002 * 119.92450 * 180.02562 * 23 22 21 37 37 H 1.07998 * 120.60567 * 179.72974 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4389 2.6527 0.6999 6 1 3.5390 1.4401 0.7001 7 6 2.0075 -1.2127 0.0005 8 1 3.0525 -1.2328 0.2724 9 6 1.3456 -2.4122 -0.3553 10 6 1.8230 -3.6650 0.0875 11 6 1.1478 -4.8052 -0.2822 12 7 0.0672 -4.7433 -1.0393 13 6 -0.4214 -3.5937 -1.4807 14 7 -1.5650 -3.5926 -2.2769 15 6 -2.2271 -4.7437 -2.5068 16 8 -1.7785 -5.7969 -2.0934 17 6 -3.4854 -4.7274 -3.2534 18 6 -4.1484 -5.8794 -3.4831 19 6 -5.4133 -5.8631 -4.2343 20 6 -5.9317 -4.6551 -4.7126 21 6 -7.1170 -4.6480 -5.4160 22 6 -7.7955 -5.8321 -5.6497 23 6 -7.2908 -7.0315 -5.1808 24 6 -6.1041 -7.0563 -4.4753 25 17 -5.4715 -8.5624 -3.8879 26 6 0.1942 -2.3922 -1.1654 27 1 -0.4850 0.8400 -0.0004 28 1 2.7053 -3.7272 0.7072 29 1 1.5068 -5.7671 0.0530 30 1 -1.8845 -2.7633 -2.6657 31 1 -3.8838 -3.7928 -3.6199 32 1 -3.7502 -6.8140 -3.1163 33 1 -5.4045 -3.7302 -4.5308 34 1 -7.5178 -3.7159 -5.7861 35 1 -8.7215 -5.8198 -6.2055 36 1 -7.8257 -7.9510 -5.3675 37 1 -0.2047 -1.4574 -1.5308 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492138784.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:27 Heat of formation + Delta-G solvation = 19.667128 kcal Electronic energy + Delta-G solvation = -23084.186881 eV Core-core repulsion = 19430.822394 eV Total energy + Delta-G solvation = -3653.364487 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.29151 -40.34156 -39.51358 -37.49206 -36.19467 -35.51257 -35.15427 -32.48892 -31.77081 -31.18793 -30.00242 -27.92645 -25.77100 -23.95660 -23.81491 -23.20327 -21.87858 -20.48535 -19.50065 -18.77194 -18.10682 -17.43190 -17.03571 -16.51196 -16.22801 -16.10924 -16.06557 -15.74917 -15.23949 -14.82911 -14.80334 -14.69384 -14.39195 -14.35540 -14.16238 -13.34321 -13.19619 -12.93778 -12.74475 -12.66442 -12.60266 -12.17334 -12.06641 -11.91082 -11.78386 -11.56594 -11.41805 -11.16081 -11.10776 -9.96898 -9.85682 -9.62169 -9.35253 -8.86254 -8.65123 -6.57065 -0.62264 0.22084 0.67134 0.98577 1.08858 1.09264 1.41806 1.54802 1.58651 2.14128 2.20456 2.31978 2.73916 2.82939 3.43302 3.67581 3.74291 3.92553 3.96253 4.17436 4.23571 4.33666 4.36542 4.64193 4.71647 4.83517 4.88434 4.90679 4.92001 5.06649 5.17831 5.21891 5.30666 5.42645 5.45927 5.47128 5.62630 5.81078 5.89959 6.14230 6.46904 6.58651 6.78424 6.82093 7.27395 7.83096 8.25781 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019753 B = 0.002387 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.143932 B =11725.122633 C =13058.596565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.040 3.960 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.483 4.483 8 H 0.084 0.916 9 C 0.113 3.887 10 C -0.298 4.298 11 C 0.112 3.888 12 N -0.582 5.582 13 C 0.332 3.668 14 N -0.644 5.644 15 C 0.524 3.476 16 O -0.532 6.532 17 C -0.192 4.192 18 C -0.031 4.031 19 C -0.082 4.082 20 C -0.094 4.094 21 C -0.113 4.113 22 C -0.091 4.091 23 C -0.118 4.118 24 C -0.036 4.036 25 Cl -0.076 7.076 26 C -0.259 4.259 27 H 0.294 0.706 28 H 0.116 0.884 29 H 0.148 0.852 30 H 0.425 0.575 31 H 0.170 0.830 32 H 0.117 0.883 33 H 0.155 0.845 34 H 0.164 0.836 35 H 0.167 0.833 36 H 0.152 0.848 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.710 -2.842 -12.921 22.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.178 4.178 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.513 4.513 8 H 0.102 0.898 9 C 0.104 3.896 10 C -0.322 4.322 11 C -0.042 4.042 12 N -0.302 5.302 13 C 0.106 3.894 14 N -0.291 5.291 15 C 0.314 3.686 16 O -0.408 6.408 17 C -0.212 4.212 18 C -0.051 4.051 19 C -0.082 4.082 20 C -0.112 4.112 21 C -0.131 4.131 22 C -0.109 4.109 23 C -0.137 4.137 24 C -0.062 4.062 25 Cl -0.047 7.047 26 C -0.285 4.285 27 H 0.105 0.895 28 H 0.134 0.866 29 H 0.166 0.834 30 H 0.263 0.737 31 H 0.187 0.813 32 H 0.135 0.865 33 H 0.172 0.828 34 H 0.181 0.819 35 H 0.184 0.816 36 H 0.170 0.830 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.052 -4.392 -12.816 22.570 hybrid contribution 1.070 1.303 0.599 1.789 sum -16.983 -3.089 -12.217 21.147 Atomic orbital electron populations 1.69809 1.09054 1.31122 1.33492 1.26836 0.95586 1.04604 0.90741 0.85099 0.78975 0.75347 0.79687 1.18397 1.19061 1.18334 1.19867 0.98285 0.91630 1.41567 0.89791 1.18020 0.90707 0.93343 0.87487 1.22078 1.06008 0.93714 1.10422 1.22208 0.90553 0.97938 0.93454 1.67361 1.16330 1.27300 1.19225 1.18436 0.88138 0.90329 0.92450 1.43296 1.24962 1.11883 1.48942 1.19140 0.85681 0.83313 0.80506 1.90869 1.68418 1.31242 1.50294 1.22937 0.94312 1.01060 1.02877 1.22346 0.91967 0.98553 0.92201 1.18866 0.94828 0.93406 1.01149 1.21747 0.96628 0.96664 0.96175 1.21628 0.94063 1.00181 0.97245 1.21718 1.00642 0.90898 0.97631 1.21320 0.93722 1.01027 0.97605 1.21432 0.97010 0.86281 1.01523 1.98387 1.86990 1.31915 1.87448 1.21534 1.03107 0.95698 1.08149 0.89546 0.86601 0.83434 0.73658 0.81288 0.86481 0.82797 0.81851 0.81573 0.83031 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.34 10.93 21.84 0.24 -39.11 16 2 C 0.04 1.89 5.20 85.29 0.44 2.34 16 3 Si 0.99 35.53 29.59 68.60 2.03 37.56 16 4 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 5 H -0.27 -9.04 7.11 99.48 0.71 -8.33 16 6 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 7 C -0.48 -25.07 9.12 23.52 0.21 -24.86 16 8 H 0.08 4.18 7.90 -2.91 -0.02 4.16 16 9 C 0.11 6.10 5.60 -21.11 -0.12 5.98 16 10 C -0.30 -15.16 9.90 22.84 0.23 -14.94 16 11 C 0.11 5.61 11.15 84.50 0.94 6.55 16 12 N -0.58 -31.19 7.84 -193.59 -1.52 -32.71 16 13 C 0.33 16.75 7.41 132.80 0.98 17.73 16 14 N -0.64 -25.94 5.38 -312.58 -1.68 -27.62 16 15 C 0.52 20.74 7.70 86.35 0.66 21.41 16 16 O -0.53 -26.23 14.48 -4.39 -0.06 -26.30 16 17 C -0.19 -5.26 9.41 23.60 0.22 -5.04 16 18 C -0.03 -0.84 9.06 23.84 0.22 -0.62 16 19 C -0.08 -1.73 5.87 -20.13 -0.12 -1.85 16 20 C -0.09 -1.41 9.41 22.57 0.21 -1.20 16 21 C -0.11 -1.15 10.03 22.23 0.22 -0.93 16 22 C -0.09 -0.87 10.04 22.34 0.22 -0.65 16 23 C -0.12 -1.66 9.82 22.25 0.22 -1.44 16 24 C -0.04 -0.72 6.36 22.65 0.14 -0.58 16 25 Cl -0.08 -1.75 27.43 -2.72 -0.07 -1.83 16 26 C -0.26 -13.51 8.62 22.99 0.20 -13.31 16 27 H 0.29 12.64 8.29 -92.71 -0.77 11.87 16 28 H 0.12 5.37 8.06 -2.91 -0.02 5.34 16 29 H 0.15 6.40 8.06 -2.91 -0.02 6.38 16 30 H 0.43 13.45 8.67 -92.71 -0.80 12.64 16 31 H 0.17 3.07 6.07 -2.91 -0.02 3.05 16 32 H 0.12 3.79 6.44 -2.91 -0.02 3.77 16 33 H 0.15 1.71 6.17 -2.91 -0.02 1.69 16 34 H 0.16 0.66 8.06 -2.91 -0.02 0.63 16 35 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 36 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.13 6.45 6.20 -2.91 -0.02 6.44 16 Total: -1.00 -72.74 341.72 4.16 -68.58 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: 0.34 Total: 32.84 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 4.90 Total: -11.41 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -2.96 Total: -99.44 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.06 Total: -26.30 kcal Atomic # 14 Polarization: 35.53 SS G_CDS: 2.03 Total: 37.56 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.07 Total: -1.83 kcal Total: -72.74 4.16 -68.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492138784.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.243 kcal (2) G-P(sol) polarization free energy of solvation -72.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds