Wall clock time and date at job start Tue Mar 31 2020 15:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86805 * 119.99898 * 2 1 4 4 H 1.48497 * 109.46833 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46953 * 299.99909 * 3 2 1 6 6 H 1.48501 * 109.47062 * 60.00307 * 3 2 1 7 7 C 1.40036 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99533 * 189.68511 * 7 2 1 9 9 C 1.41538 * 119.99780 * 9.67963 * 7 2 1 10 10 C 1.41188 * 120.99442 * 208.11424 * 9 7 2 11 11 C 1.37579 * 119.02451 * 179.97438 * 10 9 7 12 12 N 1.32086 * 121.11226 * 359.97438 * 11 10 9 13 13 C 1.32491 * 122.22742 * 0.02562 * 12 11 10 14 14 N 1.39347 * 119.58232 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99678 * 4.61526 * 14 13 12 16 16 O 1.21708 * 120.00481 * 355.50558 * 15 14 13 17 17 C 1.46333 * 119.99768 * 175.50594 * 15 14 13 18 18 C 1.34882 * 119.99888 * 186.27938 * 17 15 14 19 19 C 1.47138 * 120.00443 * 9.74850 * 18 17 15 20 20 C 1.39878 * 120.17444 * 44.62335 * 19 18 17 21 21 C 1.37846 * 119.83359 * 179.97438 * 20 19 18 22 22 C 1.38452 * 120.20546 * 0.02562 * 21 20 19 23 23 C 1.38319 * 120.37256 * 359.97438 * 22 21 20 24 24 C 1.38075 * 120.15439 * 0.02562 * 23 22 21 25 25 Cl 1.73601 * 120.10468 * 179.97438 * 24 23 22 26 26 C 1.38631 * 120.83476 * 0.27316 * 13 12 11 27 27 H 0.96999 * 120.00384 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.48560 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.44594 * 180.02562 * 11 10 9 30 30 H 0.96996 * 119.99928 * 184.61474 * 14 13 12 31 31 H 1.07994 * 119.99706 * 6.28038 * 17 15 14 32 32 H 1.08003 * 119.99723 * 189.74632 * 18 17 15 33 33 H 1.07999 * 120.08536 * 0.02562 * 20 19 18 34 34 H 1.07998 * 119.89351 * 179.97438 * 21 20 19 35 35 H 1.08002 * 119.81529 * 179.72283 * 22 21 20 36 36 H 1.08004 * 119.92627 * 179.97438 * 23 22 21 37 37 H 1.07998 * 120.60350 * 179.70511 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8826 2.3965 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0760 -1.2194 0.1568 9 6 1.3149 -2.4296 -0.2072 10 6 1.7940 -3.6406 0.3383 11 6 1.0882 -4.7998 0.1126 12 7 -0.0229 -4.7942 -0.6017 13 6 -0.5144 -3.6855 -1.1351 14 7 -1.6909 -3.7432 -1.8796 15 6 -2.3712 -4.9027 -1.9758 16 8 -1.9167 -5.9178 -1.4817 17 6 -3.6564 -4.9411 -2.6745 18 6 -4.3970 -6.0683 -2.6627 19 6 -4.0251 -7.1838 -1.7783 20 6 -3.6622 -6.9372 -0.4501 21 6 -3.3155 -7.9876 0.3725 22 6 -3.3251 -9.2844 -0.1123 23 6 -3.6825 -9.5381 -1.4242 24 6 -4.0325 -8.4973 -2.2613 25 17 -4.4802 -8.8170 -3.9079 26 6 0.1303 -2.4698 -0.9672 27 1 -0.4851 0.8400 -0.0004 28 1 2.7011 -3.6566 0.9242 29 1 1.4482 -5.7298 0.5270 30 1 -2.0202 -2.9490 -2.3285 31 1 -4.0118 -4.0668 -3.1996 32 1 -5.2632 -6.1520 -3.3024 33 1 -3.6544 -5.9264 -0.0697 34 1 -3.0348 -7.7982 1.3980 35 1 -3.0480 -10.1023 0.5364 36 1 -3.6871 -10.5525 -1.7949 37 1 -0.2712 -1.5691 -1.4076 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492138785.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:30 Heat of formation + Delta-G solvation = 50.577475 kcal Electronic energy + Delta-G solvation = -24134.619263 eV Core-core repulsion = 20482.595150 eV Total energy + Delta-G solvation = -3652.024114 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.00923 -38.91769 -37.72255 -36.38337 -34.51513 -33.81510 -33.54570 -30.58779 -30.57501 -29.84881 -28.41371 -26.01400 -24.31567 -22.52763 -22.10726 -21.92420 -20.47797 -19.13035 -17.70362 -17.53225 -16.43251 -16.01310 -15.32480 -15.27138 -14.95036 -14.48142 -14.26018 -14.22774 -13.76097 -13.74266 -13.47845 -13.09920 -12.80653 -12.63470 -12.53696 -12.29980 -11.64161 -11.46346 -11.39068 -11.31447 -11.22718 -10.93672 -10.73720 -10.31964 -10.15934 -9.93437 -9.77870 -9.43766 -9.39594 -8.52609 -8.14293 -7.97534 -7.67582 -7.04050 -6.78620 -4.65022 0.75133 1.42778 1.90415 2.17046 2.69203 2.76690 3.00572 3.05831 3.21000 3.69666 3.82246 3.84611 3.86470 4.65331 4.67704 4.90436 4.97906 5.15176 5.32537 5.40872 5.54713 5.64296 5.77756 5.89613 5.96989 6.10081 6.18198 6.36601 6.50652 6.56246 6.62483 6.67157 6.77676 6.92983 6.95103 7.09124 7.35026 7.43479 7.76663 7.92546 8.19116 8.40216 8.67669 8.73312 8.86965 9.64564 10.08417 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.024114 B = 0.002835 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.888049 B = 9873.039344 C =10480.382457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.143 3.857 10 C -0.281 4.281 11 C 0.117 3.883 12 N -0.547 5.547 13 C 0.334 3.666 14 N -0.651 5.651 15 C 0.518 3.482 16 O -0.466 6.466 17 C -0.194 4.194 18 C -0.039 4.039 19 C -0.058 4.058 20 C -0.015 4.015 21 C -0.123 4.123 22 C -0.097 4.097 23 C -0.130 4.130 24 C -0.018 4.018 25 Cl -0.080 7.080 26 C -0.236 4.236 27 H 0.280 0.720 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.408 0.592 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.554 -9.072 -3.860 14.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.489 4.489 8 H 0.100 0.900 9 C 0.135 3.865 10 C -0.304 4.304 11 C -0.038 4.038 12 N -0.266 5.266 13 C 0.109 3.891 14 N -0.296 5.296 15 C 0.305 3.695 16 O -0.338 6.338 17 C -0.215 4.215 18 C -0.059 4.059 19 C -0.058 4.058 20 C -0.034 4.034 21 C -0.142 4.142 22 C -0.116 4.116 23 C -0.149 4.149 24 C -0.045 4.045 25 Cl -0.051 7.051 26 C -0.261 4.261 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.140 0.860 30 H 0.242 0.758 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.966 -10.492 -3.798 15.645 hybrid contribution 0.717 2.196 -0.281 2.327 sum -10.249 -8.296 -4.078 13.802 Atomic orbital electron populations 1.69746 1.07535 1.29108 1.35876 1.25931 0.94872 1.01387 0.92016 0.86172 0.80852 0.80603 0.78589 1.18373 1.19703 1.19889 1.19600 0.95818 0.89991 1.43441 0.90046 1.17583 0.90235 0.92264 0.86416 1.21954 1.04410 0.94635 1.09435 1.21758 0.90716 0.96440 0.94878 1.67252 1.15122 1.27872 1.16372 1.18200 0.86727 0.90883 0.93270 1.43411 1.23495 1.12447 1.50233 1.18517 0.85555 0.84019 0.81410 1.90950 1.67754 1.31458 1.43665 1.23154 0.95549 0.99055 1.03730 1.22217 0.98018 0.91260 0.94383 1.18676 1.01911 0.90933 0.94325 1.21062 0.91925 0.98982 0.91391 1.21034 1.00359 0.92445 1.00329 1.21087 0.98681 0.97093 0.94719 1.20773 1.02359 0.98011 0.93728 1.20941 1.04151 0.93930 0.85443 1.98337 1.91164 1.95774 1.19818 1.21617 1.01466 0.95397 1.07662 0.90880 0.88008 0.85971 0.75750 0.84879 0.84621 0.85899 0.85736 0.85656 0.85503 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.39 10.83 55.55 0.60 -18.78 16 2 C 0.08 1.81 5.30 -17.34 -0.09 1.72 16 3 Si 0.91 17.82 29.57 -169.99 -5.03 12.79 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 7 C -0.46 -11.62 9.13 -37.65 -0.34 -11.97 16 8 H 0.08 1.99 7.87 -52.48 -0.41 1.58 16 9 C 0.14 3.71 5.58 -106.55 -0.59 3.12 16 10 C -0.28 -6.78 9.90 -38.70 -0.38 -7.17 16 11 C 0.12 2.74 11.15 -17.68 -0.20 2.54 16 12 N -0.55 -13.47 7.84 -12.54 -0.10 -13.57 16 13 C 0.33 7.87 7.41 -154.79 -1.15 6.72 16 14 N -0.65 -12.36 5.38 -12.78 -0.07 -12.43 16 15 C 0.52 9.38 6.80 -13.01 -0.09 9.29 16 16 O -0.47 -9.86 10.27 5.18 0.05 -9.80 16 17 C -0.19 -2.57 9.93 -37.52 -0.37 -2.94 16 18 C -0.04 -0.50 8.93 -37.16 -0.33 -0.83 16 19 C -0.06 -0.84 4.55 -105.03 -0.48 -1.32 16 20 C -0.02 -0.23 6.55 -39.11 -0.26 -0.49 16 21 C -0.12 -1.74 10.03 -39.65 -0.40 -2.14 16 22 C -0.10 -1.22 10.04 -39.47 -0.40 -1.61 16 23 C -0.13 -1.65 9.82 -39.61 -0.39 -2.04 16 24 C -0.02 -0.25 6.36 -39.00 -0.25 -0.50 16 25 Cl -0.08 -0.97 27.96 -51.86 -1.45 -2.42 16 26 C -0.24 -5.86 8.58 -38.47 -0.33 -6.19 16 27 H 0.28 6.17 8.29 -40.82 -0.34 5.84 16 28 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 29 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 30 H 0.41 6.36 8.67 -40.82 -0.35 6.00 16 31 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 32 H 0.14 1.33 7.94 -52.48 -0.42 0.92 16 33 H 0.12 2.00 7.03 -52.49 -0.37 1.64 16 34 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 37 H 0.13 3.19 6.27 -52.49 -0.33 2.86 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -30.26 337.64 -10.50 -40.76 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -3.55 Total: 12.18 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -6.05 Total: -13.80 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.43 Total: -44.79 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.05 Total: -9.80 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.45 Total: -2.42 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.26 -10.50 -40.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492138785.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.335 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds