Wall clock time and date at job start Tue Mar 31 2020 15:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86805 * 119.99898 * 2 1 4 4 H 1.48497 * 109.46833 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46953 * 299.99909 * 3 2 1 6 6 H 1.48501 * 109.47062 * 60.00307 * 3 2 1 7 7 C 1.40036 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99533 * 189.68511 * 7 2 1 9 9 C 1.41538 * 119.99780 * 9.67963 * 7 2 1 10 10 C 1.41188 * 120.99442 * 208.11424 * 9 7 2 11 11 C 1.37579 * 119.02451 * 179.97438 * 10 9 7 12 12 N 1.32086 * 121.11226 * 359.97438 * 11 10 9 13 13 C 1.32491 * 122.22742 * 0.02562 * 12 11 10 14 14 N 1.39347 * 119.58232 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99678 * 4.61526 * 14 13 12 16 16 O 1.21708 * 120.00481 * 355.50558 * 15 14 13 17 17 C 1.46333 * 119.99768 * 175.50594 * 15 14 13 18 18 C 1.34882 * 119.99888 * 186.27938 * 17 15 14 19 19 C 1.47138 * 120.00443 * 9.74850 * 18 17 15 20 20 C 1.39878 * 120.17444 * 44.62335 * 19 18 17 21 21 C 1.37846 * 119.83359 * 179.97438 * 20 19 18 22 22 C 1.38452 * 120.20546 * 0.02562 * 21 20 19 23 23 C 1.38319 * 120.37256 * 359.97438 * 22 21 20 24 24 C 1.38075 * 120.15439 * 0.02562 * 23 22 21 25 25 Cl 1.73601 * 120.10468 * 179.97438 * 24 23 22 26 26 C 1.38631 * 120.83476 * 0.27316 * 13 12 11 27 27 H 0.96999 * 120.00384 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.48560 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.44594 * 180.02562 * 11 10 9 30 30 H 0.96996 * 119.99928 * 184.61474 * 14 13 12 31 31 H 1.07994 * 119.99706 * 6.28038 * 17 15 14 32 32 H 1.08003 * 119.99723 * 189.74632 * 18 17 15 33 33 H 1.07999 * 120.08536 * 0.02562 * 20 19 18 34 34 H 1.07998 * 119.89351 * 179.97438 * 21 20 19 35 35 H 1.08002 * 119.81529 * 179.72283 * 22 21 20 36 36 H 1.08004 * 119.92627 * 179.97438 * 23 22 21 37 37 H 1.07998 * 120.60350 * 179.70511 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8826 2.3965 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0760 -1.2194 0.1568 9 6 1.3149 -2.4296 -0.2072 10 6 1.7940 -3.6406 0.3383 11 6 1.0882 -4.7998 0.1126 12 7 -0.0229 -4.7942 -0.6017 13 6 -0.5144 -3.6855 -1.1351 14 7 -1.6909 -3.7432 -1.8796 15 6 -2.3712 -4.9027 -1.9758 16 8 -1.9167 -5.9178 -1.4817 17 6 -3.6564 -4.9411 -2.6745 18 6 -4.3970 -6.0683 -2.6627 19 6 -4.0251 -7.1838 -1.7783 20 6 -3.6622 -6.9372 -0.4501 21 6 -3.3155 -7.9876 0.3725 22 6 -3.3251 -9.2844 -0.1123 23 6 -3.6825 -9.5381 -1.4242 24 6 -4.0325 -8.4973 -2.2613 25 17 -4.4802 -8.8170 -3.9079 26 6 0.1303 -2.4698 -0.9672 27 1 -0.4851 0.8400 -0.0004 28 1 2.7011 -3.6566 0.9242 29 1 1.4482 -5.7298 0.5270 30 1 -2.0202 -2.9490 -2.3285 31 1 -4.0118 -4.0668 -3.1996 32 1 -5.2632 -6.1520 -3.3024 33 1 -3.6544 -5.9264 -0.0697 34 1 -3.0348 -7.7982 1.3980 35 1 -3.0480 -10.1023 0.5364 36 1 -3.6871 -10.5525 -1.7949 37 1 -0.2712 -1.5691 -1.4076 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492138785.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:29 Heat of formation + Delta-G solvation = 35.509098 kcal Electronic energy + Delta-G solvation = -24135.272677 eV Core-core repulsion = 20482.595150 eV Total energy + Delta-G solvation = -3652.677527 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.41584 -40.27041 -39.24914 -37.38244 -36.16248 -35.48140 -34.76272 -32.44211 -31.62875 -31.14793 -29.94687 -27.89427 -25.56464 -23.87626 -23.63715 -23.27636 -22.04473 -20.46418 -19.45363 -18.73918 -17.70874 -17.54570 -16.94497 -16.45885 -16.20915 -16.05424 -15.90158 -15.69430 -15.10828 -15.04498 -14.72712 -14.43493 -14.34161 -14.08657 -14.01448 -13.60174 -13.16859 -12.88226 -12.70667 -12.65281 -12.40455 -12.35127 -12.09666 -11.86855 -11.73765 -11.43392 -11.15627 -11.10094 -10.77018 -9.89144 -9.69434 -9.55407 -9.08638 -8.81382 -8.58389 -6.57227 -0.33022 0.35221 0.72373 0.99582 1.03517 1.15340 1.41197 1.55417 1.55937 2.20500 2.25494 2.42570 2.80341 2.85837 3.64297 3.75397 3.77868 3.89455 4.11133 4.24261 4.38341 4.41911 4.53674 4.73684 4.78192 4.86631 4.91526 4.94502 5.05415 5.09833 5.19041 5.24371 5.33475 5.48188 5.49498 5.60779 5.66671 5.91712 5.93968 6.17883 6.50792 6.63292 6.80209 6.85145 7.36471 7.84559 8.30581 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.024114 B = 0.002835 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.888049 B = 9873.039344 C =10480.382457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.267 1.267 7 C -0.488 4.488 8 H 0.081 0.919 9 C 0.115 3.885 10 C -0.296 4.296 11 C 0.112 3.888 12 N -0.566 5.566 13 C 0.335 3.665 14 N -0.648 5.648 15 C 0.512 3.488 16 O -0.499 6.499 17 C -0.199 4.199 18 C -0.025 4.025 19 C -0.076 4.076 20 C -0.035 4.035 21 C -0.139 4.139 22 C -0.096 4.096 23 C -0.133 4.133 24 C -0.029 4.029 25 Cl -0.066 7.066 26 C -0.255 4.255 27 H 0.290 0.710 28 H 0.113 0.887 29 H 0.148 0.852 30 H 0.421 0.579 31 H 0.173 0.827 32 H 0.170 0.830 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.155 0.845 36 H 0.151 0.849 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.439 -9.192 -4.783 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.178 4.178 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.192 1.192 7 C -0.519 4.519 8 H 0.099 0.901 9 C 0.107 3.893 10 C -0.320 4.320 11 C -0.042 4.042 12 N -0.285 5.285 13 C 0.108 3.892 14 N -0.294 5.294 15 C 0.301 3.699 16 O -0.373 6.373 17 C -0.219 4.219 18 C -0.045 4.045 19 C -0.077 4.077 20 C -0.054 4.054 21 C -0.158 4.158 22 C -0.114 4.114 23 C -0.151 4.151 24 C -0.056 4.056 25 Cl -0.037 7.037 26 C -0.280 4.280 27 H 0.101 0.899 28 H 0.132 0.868 29 H 0.165 0.835 30 H 0.259 0.741 31 H 0.190 0.810 32 H 0.187 0.813 33 H 0.121 0.879 34 H 0.147 0.853 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.886 -10.618 -4.740 16.628 hybrid contribution 0.920 2.099 0.025 2.292 sum -10.966 -8.518 -4.714 14.664 Atomic orbital electron populations 1.69785 1.08823 1.30658 1.35305 1.26774 0.95690 1.04408 0.90962 0.85062 0.79233 0.75866 0.78976 1.18317 1.18658 1.19167 1.19862 0.96053 0.90993 1.44970 0.90098 1.18002 0.91094 0.93227 0.87011 1.22124 1.05181 0.94576 1.10115 1.22190 0.90367 0.97286 0.94323 1.67393 1.15678 1.28318 1.17134 1.18435 0.87675 0.90251 0.92815 1.43462 1.22299 1.13809 1.49867 1.19329 0.86763 0.82989 0.80811 1.90933 1.68893 1.32477 1.44998 1.23159 0.93490 1.01002 1.04285 1.22591 0.98377 0.90076 0.93422 1.18911 1.02317 0.92115 0.94350 1.21012 0.93459 0.98423 0.92459 1.21255 1.00633 0.93188 1.00690 1.21418 0.97640 0.97131 0.95206 1.21142 1.01325 0.98984 0.93655 1.21125 1.04138 0.93948 0.86352 1.98338 1.91012 1.95667 1.18687 1.21586 1.02020 0.95739 1.08656 0.89878 0.86849 0.83492 0.74099 0.80950 0.81269 0.87920 0.85315 0.82768 0.83145 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.14 10.83 21.84 0.24 -39.90 16 2 C 0.04 1.80 5.30 85.29 0.45 2.25 16 3 Si 0.99 36.12 29.57 68.60 2.03 38.15 16 4 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 5 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 6 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 7 C -0.49 -25.33 9.13 23.52 0.21 -25.11 16 8 H 0.08 4.05 7.87 -2.91 -0.02 4.03 16 9 C 0.11 6.13 5.58 -21.11 -0.12 6.01 16 10 C -0.30 -14.68 9.90 22.84 0.23 -14.45 16 11 C 0.11 5.37 11.15 84.50 0.94 6.31 16 12 N -0.57 -28.38 7.84 -193.60 -1.52 -29.90 16 13 C 0.33 16.10 7.41 132.80 0.98 17.09 16 14 N -0.65 -24.78 5.38 -312.58 -1.68 -26.46 16 15 C 0.51 18.45 6.80 86.35 0.59 19.04 16 16 O -0.50 -21.34 10.27 -4.37 -0.04 -21.39 16 17 C -0.20 -4.94 9.93 23.61 0.23 -4.70 16 18 C -0.03 -0.59 8.93 23.84 0.21 -0.38 16 19 C -0.08 -2.15 4.55 -20.13 -0.09 -2.24 16 20 C -0.03 -1.09 6.55 22.57 0.15 -0.94 16 21 C -0.14 -3.94 10.03 22.23 0.22 -3.71 16 22 C -0.10 -2.26 10.04 22.34 0.22 -2.04 16 23 C -0.13 -3.11 9.82 22.25 0.22 -2.89 16 24 C -0.03 -0.75 6.36 22.65 0.14 -0.61 16 25 Cl -0.07 -1.46 27.96 -2.72 -0.08 -1.54 16 26 C -0.25 -13.02 8.58 22.99 0.20 -12.82 16 27 H 0.29 12.70 8.29 -92.71 -0.77 11.93 16 28 H 0.11 5.16 8.06 -2.91 -0.02 5.14 16 29 H 0.15 6.07 8.06 -2.91 -0.02 6.04 16 30 H 0.42 13.09 8.67 -92.71 -0.80 12.29 16 31 H 0.17 2.83 8.06 -2.91 -0.02 2.80 16 32 H 0.17 2.76 7.94 -2.91 -0.02 2.74 16 33 H 0.10 3.52 7.03 -2.91 -0.02 3.50 16 34 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.12 6.30 6.27 -2.91 -0.02 6.28 16 Total: -1.00 -66.71 337.64 4.07 -62.64 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: 0.32 Total: 37.60 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: 4.80 Total: -19.21 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -2.96 Total: -96.26 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.04 Total: -21.39 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal Total: -66.71 4.07 -62.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492138785.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.148 kcal (2) G-P(sol) polarization free energy of solvation -66.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds