Wall clock time and date at job start Tue Mar 31 2020 15:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86802 * 119.99604 * 2 1 4 4 H 1.48501 * 109.46864 * 269.99632 * 3 2 1 5 5 H 1.48503 * 109.47499 * 29.99914 * 3 2 1 6 6 H 1.48502 * 109.46984 * 150.00065 * 3 2 1 7 7 C 1.40029 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00145 * 196.86124 * 7 2 1 9 9 C 1.41542 * 120.00108 * 16.86007 * 7 2 1 10 10 C 1.41182 * 120.99502 * 203.63746 * 9 7 2 11 11 C 1.37585 * 119.01965 * 179.97438 * 10 9 7 12 12 N 1.32085 * 121.11549 * 0.02562 * 11 10 9 13 13 C 1.32489 * 122.22823 * 359.97438 * 12 11 10 14 14 N 1.39340 * 119.58474 * 180.02562 * 13 12 11 15 15 C 1.34776 * 119.99972 * 5.20888 * 14 13 12 16 16 O 1.21698 * 120.00138 * 355.13438 * 15 14 13 17 17 C 1.46324 * 119.99832 * 175.13749 * 15 14 13 18 18 C 1.34887 * 120.00219 * 179.97438 * 17 15 14 19 19 C 1.47142 * 120.00283 * 180.02562 * 18 17 15 20 20 C 1.39869 * 120.15824 * 0.25014 * 19 18 17 21 21 C 1.37834 * 119.84054 * 180.25519 * 20 19 18 22 22 C 1.38552 * 120.15562 * 359.47362 * 21 20 19 23 23 Cl 1.73604 * 119.83920 * 180.28040 * 22 21 20 24 24 C 1.38544 * 120.32141 * 0.29978 * 22 21 20 25 25 C 1.37841 * 120.15744 * 359.95488 * 24 22 21 26 26 C 1.38644 * 120.83110 * 0.27813 * 13 12 11 27 27 H 0.96993 * 119.99949 * 0.02562 * 1 2 3 28 28 H 1.07991 * 120.49207 * 359.97438 * 10 9 7 29 29 H 1.08002 * 119.44579 * 180.02562 * 11 10 9 30 30 H 0.97003 * 120.00043 * 185.20147 * 14 13 12 31 31 H 1.08000 * 120.00288 * 0.02562 * 17 15 14 32 32 H 1.08002 * 119.99623 * 0.02562 * 18 17 15 33 33 H 1.07999 * 120.08570 * 0.02562 * 20 19 18 34 34 H 1.08001 * 119.92386 * 179.75664 * 21 20 19 35 35 H 1.07999 * 119.92804 * 179.97438 * 24 22 21 36 36 H 1.07997 * 120.08099 * 179.97438 * 25 24 22 37 37 H 1.07995 * 120.60222 * 179.70025 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4388 2.6528 0.7000 6 1 3.5389 1.4403 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0528 -1.2326 0.2718 9 6 1.3456 -2.4123 -0.3544 10 6 1.8233 -3.6648 0.0887 11 6 1.1478 -4.8052 -0.2802 12 7 0.0675 -4.7438 -1.0378 13 6 -0.4212 -3.5943 -1.4795 14 7 -1.5651 -3.5936 -2.2753 15 6 -2.2272 -4.7449 -2.5045 16 8 -1.7783 -5.7978 -2.0911 17 6 -3.4859 -4.7288 -3.2506 18 6 -4.1484 -5.8811 -3.4805 19 6 -5.4138 -5.8650 -4.2313 20 6 -5.9300 -4.6575 -4.7125 21 6 -7.1186 -4.6494 -5.4104 22 6 -7.7961 -5.8350 -5.6450 23 17 -9.2888 -5.8161 -6.5312 24 6 -7.2883 -7.0354 -5.1754 25 6 -6.1035 -7.0581 -4.4715 26 6 0.1941 -2.3926 -1.1643 27 1 -0.4850 0.8400 -0.0004 28 1 2.7058 -3.7268 0.7080 29 1 1.5069 -5.7670 0.0552 30 1 -1.8848 -2.7645 -2.6642 31 1 -3.8841 -3.7945 -3.6179 32 1 -3.7500 -6.8155 -3.1136 33 1 -5.4006 -3.7331 -4.5345 34 1 -7.5205 -3.7172 -5.7792 35 1 -7.8219 -7.9558 -5.3616 36 1 -5.7090 -7.9945 -4.1056 37 1 -0.2047 -1.4581 -1.5304 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492157425.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:35 Heat of formation + Delta-G solvation = 18.471640 kcal Electronic energy + Delta-G solvation = -22807.447432 eV Core-core repulsion = 19154.031105 eV Total energy + Delta-G solvation = -3653.416327 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.26691 -40.34015 -39.50299 -37.55314 -36.17186 -35.48830 -34.89898 -32.47815 -32.17722 -31.06148 -29.90029 -27.91926 -25.65999 -24.00278 -23.84134 -23.23655 -21.84451 -20.46229 -19.48711 -18.71888 -18.15459 -17.49067 -17.01506 -16.45313 -16.18046 -16.08993 -16.04016 -15.74788 -15.25009 -14.96322 -14.59550 -14.50526 -14.47955 -14.35736 -14.15722 -13.32291 -13.19507 -12.93867 -12.83687 -12.69022 -12.64607 -12.37460 -12.07685 -11.90899 -11.76677 -11.51574 -11.15586 -11.10333 -11.08251 -10.09356 -9.96029 -9.61350 -9.26259 -8.84753 -8.64568 -6.56658 -0.62838 0.29812 0.64606 0.98994 1.06422 1.10273 1.41733 1.54622 1.58621 2.17289 2.20437 2.32529 2.74084 2.84132 3.49204 3.68214 3.75206 3.87856 3.99359 4.15607 4.22203 4.28375 4.35610 4.65168 4.73293 4.84696 4.90891 4.93105 5.01371 5.06375 5.09740 5.19837 5.21928 5.35585 5.47907 5.55499 5.64273 5.72331 5.90718 6.15249 6.47860 6.60464 6.79148 6.82620 7.29740 7.83802 8.25819 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019989 B = 0.002040 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.431666 B =13719.597245 C =15045.426867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.040 3.960 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.484 4.484 8 H 0.084 0.916 9 C 0.112 3.888 10 C -0.299 4.299 11 C 0.113 3.887 12 N -0.580 5.580 13 C 0.332 3.668 14 N -0.646 5.646 15 C 0.525 3.475 16 O -0.533 6.533 17 C -0.200 4.200 18 C -0.018 4.018 19 C -0.077 4.077 20 C -0.092 4.092 21 C -0.116 4.116 22 C -0.036 4.036 23 Cl -0.069 7.069 24 C -0.116 4.116 25 C -0.086 4.086 26 C -0.260 4.260 27 H 0.293 0.707 28 H 0.116 0.884 29 H 0.150 0.850 30 H 0.424 0.576 31 H 0.164 0.836 32 H 0.128 0.872 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.351 -4.242 -11.928 20.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.178 4.178 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.514 4.514 8 H 0.102 0.898 9 C 0.104 3.896 10 C -0.323 4.323 11 C -0.041 4.041 12 N -0.300 5.300 13 C 0.106 3.894 14 N -0.293 5.293 15 C 0.315 3.685 16 O -0.409 6.409 17 C -0.220 4.220 18 C -0.038 4.038 19 C -0.078 4.078 20 C -0.110 4.110 21 C -0.134 4.134 22 C -0.063 4.063 23 Cl -0.040 7.040 24 C -0.134 4.134 25 C -0.104 4.104 26 C -0.286 4.286 27 H 0.104 0.896 28 H 0.134 0.866 29 H 0.167 0.833 30 H 0.262 0.738 31 H 0.181 0.819 32 H 0.146 0.854 33 H 0.172 0.828 34 H 0.170 0.830 35 H 0.171 0.829 36 H 0.170 0.830 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.894 -5.646 -11.963 21.456 hybrid contribution 0.654 1.753 0.292 1.894 sum -16.240 -3.893 -11.671 20.374 Atomic orbital electron populations 1.69806 1.09041 1.31091 1.33599 1.26830 0.95580 1.04595 0.90768 0.85110 0.78997 0.75401 0.79671 1.18432 1.19109 1.18306 1.19868 0.98267 0.91648 1.41620 0.89812 1.18018 0.90718 0.93356 0.87489 1.22077 1.06012 0.93729 1.10442 1.22225 0.90542 0.97931 0.93411 1.67370 1.16279 1.27175 1.19146 1.18440 0.88170 0.90312 0.92438 1.43328 1.24934 1.12024 1.48968 1.19163 0.85690 0.83222 0.80439 1.90858 1.68477 1.31145 1.50383 1.22938 0.94426 1.01381 1.03298 1.22344 0.91430 0.98469 0.91514 1.19142 0.94563 0.94610 0.99441 1.21656 0.95141 0.98375 0.95789 1.21226 0.95021 0.97849 0.99318 1.21339 0.89881 0.95870 0.99213 1.98383 1.32583 1.98934 1.74140 1.21219 0.96414 0.97597 0.98219 1.21589 0.93860 0.98358 0.96566 1.21535 1.03137 0.95748 1.08173 0.89583 0.86637 0.83291 0.73758 0.81912 0.85417 0.82770 0.82950 0.82907 0.82956 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.26 10.93 21.84 0.24 -39.02 16 2 C 0.04 1.88 5.20 85.29 0.44 2.32 16 3 Si 0.99 35.44 29.59 68.60 2.03 37.47 16 4 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 5 H -0.27 -9.06 7.11 99.48 0.71 -8.35 16 6 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 7 C -0.48 -24.94 9.12 23.52 0.21 -24.73 16 8 H 0.08 4.14 7.90 -2.91 -0.02 4.12 16 9 C 0.11 6.02 5.60 -21.12 -0.12 5.90 16 10 C -0.30 -14.95 9.90 22.84 0.23 -14.72 16 11 C 0.11 5.50 11.15 84.50 0.94 6.44 16 12 N -0.58 -30.24 7.84 -193.59 -1.52 -31.76 16 13 C 0.33 16.40 7.41 132.80 0.98 17.38 16 14 N -0.65 -25.22 5.38 -312.59 -1.68 -26.91 16 15 C 0.52 19.62 7.70 86.35 0.66 20.29 16 16 O -0.53 -24.76 14.48 -4.34 -0.06 -24.82 16 17 C -0.20 -4.97 9.41 23.60 0.22 -4.75 16 18 C -0.02 -0.40 9.46 23.84 0.23 -0.18 16 19 C -0.08 -1.37 5.87 -20.15 -0.12 -1.49 16 20 C -0.09 -1.38 9.41 22.57 0.21 -1.17 16 21 C -0.12 -1.62 9.81 22.25 0.22 -1.41 16 22 C -0.04 -0.54 6.33 22.42 0.14 -0.40 16 23 Cl -0.07 -0.99 28.95 -2.72 -0.08 -1.07 16 24 C -0.12 -1.61 9.81 22.25 0.22 -1.39 16 25 C -0.09 -1.30 9.79 22.57 0.22 -1.07 16 26 C -0.26 -13.41 8.62 22.99 0.20 -13.21 16 27 H 0.29 12.62 8.29 -92.71 -0.77 11.85 16 28 H 0.12 5.27 8.06 -2.92 -0.02 5.25 16 29 H 0.15 6.26 8.06 -2.91 -0.02 6.23 16 30 H 0.42 13.11 8.67 -92.71 -0.80 12.30 16 31 H 0.16 2.75 6.07 -2.91 -0.02 2.74 16 32 H 0.13 3.17 7.52 -2.91 -0.02 3.15 16 33 H 0.15 1.75 6.17 -2.91 -0.02 1.73 16 34 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 35 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 36 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.13 6.34 6.20 -2.91 -0.02 6.33 16 Total: -1.00 -69.03 344.19 4.16 -64.88 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.33 Total: 33.40 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 4.90 Total: -12.18 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -2.96 Total: -97.69 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.06 Total: -24.82 kcal Atomic # 14 Polarization: 35.44 SS G_CDS: 2.03 Total: 37.47 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -69.03 4.16 -64.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492157425.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.351 kcal (2) G-P(sol) polarization free energy of solvation -69.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds