Wall clock time and date at job start Tue Mar 31 2020 15:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30843 * 1 3 3 Si 1.86801 * 120.00163 * 2 1 4 4 H 1.48496 * 109.47424 * 270.00217 * 3 2 1 5 5 H 1.48500 * 109.46891 * 30.00386 * 3 2 1 6 6 H 1.48503 * 109.47209 * 150.00031 * 3 2 1 7 7 C 1.39972 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00263 * 175.62433 * 7 2 1 9 9 C 1.41037 * 119.99653 * 355.62926 * 7 2 1 10 10 C 1.40749 * 120.30333 * 34.99777 * 9 7 2 11 11 C 1.36457 * 119.94171 * 180.27480 * 10 9 7 12 12 C 1.38881 * 120.59057 * 359.70063 * 11 10 9 13 13 C 1.38189 * 120.62701 * 359.97438 * 12 11 10 14 14 C 1.38711 * 120.02719 * 0.02562 * 13 12 11 15 15 N 1.38941 * 120.29109 * 179.97438 * 14 13 12 16 16 C 1.34781 * 119.99930 * 34.58975 * 15 14 13 17 17 O 1.21715 * 120.00157 * 355.79454 * 16 15 14 18 18 C 1.46305 * 119.99531 * 175.79624 * 16 15 14 19 19 C 1.34908 * 119.99635 * 179.97438 * 18 16 15 20 20 C 1.47147 * 119.99896 * 179.97438 * 19 18 16 21 21 C 1.40338 * 120.56911 * 180.02562 * 20 19 18 22 22 C 1.38193 * 118.28011 * 180.02562 * 21 20 19 23 23 C 1.38593 * 119.32652 * 0.02562 * 22 21 20 24 24 Cl 1.73601 * 119.44530 * 179.97438 * 23 22 21 25 25 N 1.32048 * 121.10910 * 0.25259 * 23 22 21 26 26 C 1.31663 * 121.88671 * 359.47564 * 25 23 22 27 27 H 0.97002 * 119.99573 * 359.97438 * 1 2 3 28 28 H 1.07991 * 120.02920 * 359.97317 * 10 9 7 29 29 H 1.08003 * 119.69917 * 179.72280 * 11 10 9 30 30 H 1.08001 * 119.68720 * 180.02562 * 12 11 10 31 31 H 1.08001 * 119.98930 * 180.02562 * 13 12 11 32 32 H 0.97002 * 119.99694 * 214.59566 * 15 14 13 33 33 H 1.07999 * 120.00425 * 359.97438 * 18 16 15 34 34 H 1.08003 * 120.00063 * 0.02562 * 19 18 16 35 35 H 1.07993 * 120.86030 * 0.04174 * 21 20 19 36 36 H 1.08004 * 120.33630 * 179.97438 * 22 21 20 37 37 H 1.07997 * 119.73625 * 180.24844 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4900 2.0465 -1.4000 5 1 1.4400 2.6526 0.7001 6 1 3.5401 1.4401 0.7000 7 6 2.0083 -1.2122 -0.0005 8 1 3.0860 -1.2135 -0.0719 9 6 1.3062 -2.4318 0.0920 10 6 0.0459 -2.5738 -0.5182 11 6 -0.6295 -3.7554 -0.4193 12 6 -0.0820 -4.8265 0.2748 13 6 1.1567 -4.7156 0.8774 14 6 1.8657 -3.5264 0.7930 15 7 3.1113 -3.4087 1.3972 16 6 3.9399 -4.4707 1.4454 17 8 3.5681 -5.5521 1.0287 18 6 5.2863 -4.3233 1.9987 19 6 6.1155 -5.3863 2.0474 20 6 7.4698 -5.2381 2.6033 21 6 8.3425 -6.3357 2.6593 22 6 9.6033 -6.1433 3.1912 23 6 9.9624 -4.8852 3.6485 24 17 11.5453 -4.6402 4.3179 25 7 9.1189 -3.8711 3.5885 26 6 7.9089 -4.0017 3.0862 27 1 -0.4849 0.8401 0.0004 28 1 -0.3885 -1.7468 -1.0601 29 1 -1.5984 -3.8586 -0.8852 30 1 -0.6290 -5.7551 0.3436 31 1 1.5729 -5.5553 1.4142 32 1 3.3845 -2.5624 1.7844 33 1 5.6163 -3.3636 2.3681 34 1 5.7856 -6.3460 1.6776 35 1 8.0367 -7.3056 2.2959 36 1 10.3015 -6.9652 3.2508 37 1 7.2486 -3.1478 3.0506 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492911941.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:17 Heat of formation + Delta-G solvation = 14.129136 kcal Electronic energy + Delta-G solvation = -23164.247119 eV Core-core repulsion = 19510.642487 eV Total energy + Delta-G solvation = -3653.604632 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.41412 -41.03825 -39.00960 -37.75609 -35.65312 -35.44264 -35.32929 -33.53736 -31.48888 -31.21147 -29.90174 -27.18195 -25.87887 -24.87049 -23.62283 -22.82276 -21.66724 -20.56031 -19.23200 -18.77805 -18.45317 -17.92101 -17.31632 -16.84426 -16.21854 -16.03778 -15.89350 -15.58445 -15.45241 -15.24090 -14.74190 -14.40036 -14.34373 -14.15780 -13.59114 -13.21070 -13.08324 -13.03034 -12.97172 -12.84059 -12.71044 -12.36936 -12.10410 -11.95131 -11.67336 -11.59527 -11.07174 -10.95173 -10.79367 -10.71911 -10.57481 -9.49654 -9.22263 -8.76745 -8.43392 -6.34868 -0.81124 0.08643 0.64175 0.73200 1.00294 1.16011 1.44179 1.52840 1.57853 2.24742 2.28540 2.47181 2.68430 2.82939 3.33093 3.51734 3.69543 3.72616 3.80248 3.92592 4.14935 4.20611 4.52877 4.60311 4.64772 4.76527 4.78594 4.84063 5.10434 5.22460 5.24338 5.25731 5.38523 5.42530 5.46920 5.81363 5.89007 6.16431 6.20052 6.28509 6.57276 6.67178 6.77993 6.97908 7.03676 7.40798 8.43262 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014292 B = 0.002552 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.724444 B =10968.644268 C =12826.079142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.032 3.968 3 Si 0.985 3.015 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.250 1.250 7 C -0.489 4.489 8 H 0.081 0.919 9 C 0.067 3.933 10 C -0.164 4.164 11 C -0.124 4.124 12 C -0.220 4.220 13 C -0.107 4.107 14 C 0.017 3.983 15 N -0.630 5.630 16 C 0.526 3.474 17 O -0.580 6.580 18 C -0.193 4.193 19 C -0.013 4.013 20 C -0.119 4.119 21 C -0.035 4.035 22 C -0.148 4.148 23 C 0.160 3.840 24 Cl -0.031 7.031 25 N -0.505 5.505 26 C 0.128 3.872 27 H 0.284 0.716 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.414 0.586 33 H 0.158 0.842 34 H 0.141 0.859 35 H 0.181 0.819 36 H 0.178 0.822 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.108 -7.444 7.107 20.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.174 1.174 7 C -0.519 4.519 8 H 0.099 0.901 9 C 0.063 3.937 10 C -0.185 4.185 11 C -0.143 4.143 12 C -0.239 4.239 13 C -0.127 4.127 14 C -0.078 4.078 15 N -0.271 5.271 16 C 0.318 3.682 17 O -0.463 6.463 18 C -0.214 4.214 19 C -0.033 4.033 20 C -0.121 4.121 21 C -0.060 4.060 22 C -0.168 4.168 23 C -0.003 4.003 24 Cl -0.003 7.003 25 N -0.216 5.216 26 C -0.030 4.030 27 H 0.095 0.905 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.251 0.749 33 H 0.175 0.825 34 H 0.158 0.842 35 H 0.198 0.802 36 H 0.195 0.805 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 18.113 -7.169 7.217 20.775 hybrid contribution -0.216 0.573 -0.191 0.642 sum 17.898 -6.596 7.026 20.327 Atomic orbital electron populations 1.69847 1.08810 1.29984 1.37903 1.26730 0.95619 1.04266 0.91487 0.85146 0.79172 0.75956 0.79123 1.19437 1.19934 1.17363 1.19512 0.94925 0.90401 1.47072 0.90052 1.17826 0.93777 0.92436 0.89669 1.21208 0.97423 0.96913 1.02921 1.20786 0.99352 0.93806 1.00344 1.20701 0.97263 0.99143 1.06828 1.20860 0.94362 0.96613 1.00835 1.17974 0.88673 0.97283 1.03900 1.42780 1.14619 1.14471 1.55252 1.18942 0.86438 0.83656 0.79190 1.90738 1.77774 1.27465 1.50286 1.22947 0.92142 1.01875 1.04403 1.22156 0.89909 0.99222 0.92050 1.20087 0.94941 0.95460 1.01613 1.22224 0.91175 0.99838 0.92774 1.22100 0.98426 0.96728 0.99545 1.22157 0.89331 0.91303 0.97520 1.98413 1.20878 1.97490 1.83473 1.66965 1.04335 1.33679 1.16587 1.23349 0.90646 0.97492 0.91516 0.90538 0.86698 0.87036 0.86592 0.87001 0.74866 0.82455 0.84178 0.80170 0.80493 0.79985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.26 10.62 21.83 0.23 -42.02 16 2 C 0.03 1.52 5.42 85.26 0.46 1.98 16 3 Si 0.98 36.11 29.56 68.60 2.03 38.14 16 4 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 6 H -0.25 -8.59 7.11 99.48 0.71 -7.88 16 7 C -0.49 -24.27 8.22 23.38 0.19 -24.08 16 8 H 0.08 3.79 7.63 -2.91 -0.02 3.77 16 9 C 0.07 3.46 5.56 -21.17 -0.12 3.34 16 10 C -0.16 -8.59 8.61 22.47 0.19 -8.39 16 11 C -0.12 -5.86 9.96 22.01 0.22 -5.64 16 12 C -0.22 -10.04 10.04 22.41 0.22 -9.81 16 13 C -0.11 -5.07 8.68 22.37 0.19 -4.88 16 14 C 0.02 0.79 6.33 38.94 0.25 1.04 16 15 N -0.63 -24.73 4.95 -306.18 -1.52 -26.25 16 16 C 0.53 18.74 7.58 86.34 0.65 19.39 16 17 O -0.58 -24.56 13.64 -4.40 -0.06 -24.62 16 18 C -0.19 -4.63 9.42 23.60 0.22 -4.41 16 19 C -0.01 -0.26 9.48 23.85 0.23 -0.03 16 20 C -0.12 -1.98 5.88 -20.05 -0.12 -2.10 16 21 C -0.03 -0.43 9.94 22.77 0.23 -0.20 16 22 C -0.15 -1.83 9.86 22.34 0.22 -1.61 16 23 C 0.16 2.87 7.27 84.75 0.62 3.49 16 24 Cl -0.03 -0.51 29.10 -2.72 -0.08 -0.59 16 25 N -0.50 -10.71 10.32 -185.33 -1.91 -12.62 16 26 C 0.13 2.34 10.59 85.10 0.90 3.24 16 27 H 0.28 13.11 8.30 -92.71 -0.77 12.34 16 28 H 0.12 6.26 6.16 -2.92 -0.02 6.24 16 29 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 30 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 31 H 0.11 5.22 6.19 -2.91 -0.02 5.21 16 32 H 0.41 14.32 8.08 -92.71 -0.75 13.57 16 33 H 0.16 2.77 6.10 -2.91 -0.02 2.75 16 34 H 0.14 2.91 7.52 -2.91 -0.02 2.89 16 35 H 0.18 1.13 8.06 -2.91 -0.02 1.10 16 36 H 0.18 1.12 8.06 -2.91 -0.02 1.09 16 37 H 0.18 2.69 6.19 -2.91 -0.02 2.67 16 Total: -1.00 -65.59 340.75 3.65 -61.94 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: 0.39 Total: 34.70 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 4.56 Total: -28.67 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -3.20 Total: -80.89 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.06 Total: -24.62 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.14 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -0.08 Total: -0.59 kcal Total: -65.59 3.65 -61.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492911941.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.067 kcal (2) G-P(sol) polarization free energy of solvation -65.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds