Wall clock time and date at job start Tue Mar 31 2020 15:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30841 * 1 3 3 Si 1.86801 * 120.00100 * 2 1 4 4 H 1.48506 * 109.47271 * 240.00323 * 3 2 1 5 5 H 1.48504 * 109.47129 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47313 * 120.00452 * 3 2 1 7 7 C 1.39972 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99466 * 186.64215 * 7 2 1 9 9 C 1.41027 * 120.00301 * 6.63772 * 7 2 1 10 10 C 1.40748 * 120.30302 * 33.07931 * 9 7 2 11 11 C 1.36451 * 119.94628 * 180.28131 * 10 9 7 12 12 C 1.38890 * 120.59087 * 359.71829 * 11 10 9 13 13 C 1.38187 * 120.62163 * 0.02562 * 12 11 10 14 14 C 1.38708 * 120.03116 * 359.97438 * 13 12 11 15 15 N 1.38948 * 120.29291 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99635 * 33.76695 * 15 14 13 17 17 O 1.21716 * 120.00310 * 355.20216 * 16 15 14 18 18 C 1.46310 * 119.99950 * 175.20968 * 16 15 14 19 19 C 1.34900 * 120.00023 * 172.79318 * 18 16 15 20 20 C 1.47136 * 120.00204 * 346.57789 * 19 18 16 21 21 C 1.40339 * 120.57276 * 317.42983 * 20 19 18 22 22 C 1.38186 * 118.28625 * 179.75450 * 21 20 19 23 23 C 1.38596 * 119.32607 * 0.51645 * 22 21 20 24 24 Cl 1.73592 * 119.45008 * 179.71971 * 23 22 21 25 25 N 1.32050 * 121.10439 * 359.74287 * 23 22 21 26 26 C 1.31665 * 121.88890 * 359.97438 * 25 23 22 27 27 H 0.97003 * 119.99904 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03050 * 359.97438 * 10 9 7 29 29 H 1.07999 * 119.70763 * 179.74673 * 11 10 9 30 30 H 1.08000 * 119.69113 * 180.02562 * 12 11 10 31 31 H 1.08000 * 119.98506 * 179.97438 * 13 12 11 32 32 H 0.96996 * 120.00014 * 214.03750 * 15 14 13 33 33 H 1.07996 * 119.99804 * 352.78808 * 18 16 15 34 34 H 1.07999 * 120.00016 * 166.57337 * 19 18 16 35 35 H 1.07998 * 120.85214 * 359.97291 * 21 20 19 36 36 H 1.07999 * 120.33793 * 180.21061 * 22 21 20 37 37 H 1.08001 * 119.73049 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6965 -1.2126 5 1 1.2774 2.7465 0.0006 6 1 3.0963 1.6964 1.2125 7 6 2.0083 -1.2122 -0.0005 8 1 3.0828 -1.2153 0.1076 9 6 1.3103 -2.4294 -0.1423 10 6 0.1463 -2.4929 -0.9310 11 6 -0.5266 -3.6731 -1.0585 12 6 -0.0704 -4.8193 -0.4203 13 6 1.0725 -4.7854 0.3556 14 6 1.7766 -3.5994 0.5029 15 7 2.9268 -3.5592 1.2814 16 6 3.7410 -4.6318 1.3364 17 8 3.4256 -5.6648 0.7753 18 6 5.0042 -4.5545 2.0707 19 6 5.7493 -5.6647 2.2497 20 6 5.1720 -6.9902 1.9766 21 6 3.8658 -7.2982 2.3869 22 6 3.3690 -8.5556 2.1013 23 6 4.1722 -9.4676 1.4349 24 17 3.5540 -11.0506 1.0810 25 7 5.4001 -9.1526 1.0652 26 6 5.9173 -7.9665 1.3088 27 1 -0.4850 0.8401 0.0004 28 1 -0.2168 -1.6072 -1.4310 29 1 -1.4216 -3.7166 -1.6614 30 1 -0.6141 -5.7458 -0.5315 31 1 1.4177 -5.6827 0.8476 32 1 3.1417 -2.7606 1.7883 33 1 5.3400 -3.6087 2.4693 34 1 6.7697 -5.5805 2.5934 35 1 3.2631 -6.5699 2.9092 36 1 2.3668 -8.8267 2.3987 37 1 6.9257 -7.7464 0.9910 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492911942.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:21 Heat of formation + Delta-G solvation = 40.905510 kcal Electronic energy + Delta-G solvation = -24238.593973 eV Core-core repulsion = 20586.150452 eV Total energy + Delta-G solvation = -3652.443521 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.41824 -39.41821 -37.39629 -36.61508 -34.40989 -33.72426 -33.63416 -32.13833 -30.14236 -29.66316 -28.35949 -25.44078 -24.44163 -23.63413 -22.41757 -21.25675 -20.19146 -19.08409 -17.68603 -17.38578 -16.95715 -16.61292 -16.19317 -15.31862 -14.93808 -14.60323 -14.45071 -14.20300 -14.03687 -13.68547 -13.29768 -13.10571 -12.94345 -12.66546 -12.34440 -11.88170 -11.77644 -11.73834 -11.35703 -11.32951 -11.24229 -11.02632 -10.56532 -10.44140 -10.16610 -9.86899 -9.69723 -9.44348 -9.33216 -9.14475 -8.93562 -8.27833 -7.40941 -7.04223 -6.72883 -4.49791 0.47746 1.25683 1.70578 1.83352 2.67366 2.89883 2.99375 3.00884 3.13928 3.65144 3.74209 3.83903 3.95059 4.44450 4.58258 4.59916 4.86844 4.92374 5.03213 5.23233 5.44710 5.56102 5.59533 5.84383 5.93406 6.10552 6.26386 6.33717 6.44425 6.50481 6.52219 6.88317 6.99593 7.10188 7.21659 7.58408 7.63364 7.72704 7.89215 8.02171 8.05382 8.33536 8.48473 8.73784 8.76743 8.94969 10.14018 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.003180 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.789351 B = 8803.226073 C =10059.450544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.472 4.472 8 H 0.075 0.925 9 C 0.104 3.896 10 C -0.141 4.141 11 C -0.115 4.115 12 C -0.220 4.220 13 C -0.087 4.087 14 C 0.014 3.986 15 N -0.624 5.624 16 C 0.515 3.485 17 O -0.535 6.535 18 C -0.184 4.184 19 C -0.045 4.045 20 C -0.103 4.103 21 C 0.013 3.987 22 C -0.159 4.159 23 C 0.180 3.820 24 Cl -0.043 7.043 25 N -0.488 5.488 26 C 0.128 3.872 27 H 0.281 0.719 28 H 0.121 0.879 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.404 0.596 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.733 -8.072 7.062 13.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.502 4.502 8 H 0.093 0.907 9 C 0.100 3.900 10 C -0.160 4.160 11 C -0.134 4.134 12 C -0.240 4.240 13 C -0.107 4.107 14 C -0.080 4.080 15 N -0.264 5.264 16 C 0.304 3.696 17 O -0.415 6.415 18 C -0.205 4.205 19 C -0.065 4.065 20 C -0.105 4.105 21 C -0.013 4.013 22 C -0.180 4.180 23 C 0.016 3.984 24 Cl -0.015 7.015 25 N -0.199 5.199 26 C -0.029 4.029 27 H 0.092 0.908 28 H 0.138 0.862 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.240 0.760 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 8.758 -9.357 6.203 14.239 hybrid contribution -0.189 1.905 0.462 1.969 sum 8.570 -7.452 6.664 13.167 Atomic orbital electron populations 1.69767 1.07344 1.29228 1.36460 1.25852 0.94852 1.01054 0.92377 0.86321 0.79941 0.80316 0.79826 1.18972 1.20340 1.19075 1.19274 0.94788 0.90152 1.45999 0.90708 1.17431 0.92881 0.91012 0.88680 1.20942 0.97769 0.96560 1.00772 1.20511 0.98873 0.93778 1.00245 1.20354 0.99799 0.97238 1.06589 1.20669 0.94137 0.96377 0.99533 1.17772 0.91257 0.96452 1.02494 1.42852 1.21973 1.16517 1.45042 1.18452 0.84138 0.84427 0.82540 1.90820 1.74568 1.29069 1.47048 1.23216 0.96404 0.99731 1.01172 1.22103 0.98457 0.90183 0.95768 1.19912 0.95086 0.94973 1.00543 1.21537 0.92668 0.94030 0.93092 1.21610 1.01182 0.93606 1.01636 1.21607 0.91432 0.88227 0.97183 1.98385 1.85224 1.24103 1.93761 1.66832 1.12245 1.20911 1.19899 1.22694 0.99363 0.86596 0.94210 0.90810 0.86159 0.89320 0.89176 0.87121 0.76037 0.84611 0.84210 0.84621 0.84056 0.82083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.65 10.93 55.55 0.61 -19.04 16 2 C 0.08 1.77 5.30 -17.32 -0.09 1.68 16 3 Si 0.91 17.51 29.57 -169.99 -5.03 12.49 16 4 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 7 C -0.47 -11.41 8.26 -37.88 -0.31 -11.73 16 8 H 0.07 1.71 7.55 -52.49 -0.40 1.31 16 9 C 0.10 2.59 5.53 -106.65 -0.59 2.00 16 10 C -0.14 -3.53 8.58 -39.28 -0.34 -3.87 16 11 C -0.12 -2.68 9.96 -39.98 -0.40 -3.08 16 12 C -0.22 -4.99 10.04 -39.36 -0.39 -5.39 16 13 C -0.09 -2.00 8.69 -39.43 -0.34 -2.34 16 14 C 0.01 0.33 6.35 -83.22 -0.53 -0.20 16 15 N -0.62 -11.76 4.94 -10.76 -0.05 -11.82 16 16 C 0.52 8.78 6.61 -13.02 -0.09 8.70 16 17 O -0.53 -10.53 9.72 5.17 0.05 -10.48 16 18 C -0.18 -2.21 9.90 -37.52 -0.37 -2.58 16 19 C -0.04 -0.46 9.83 -37.16 -0.37 -0.83 16 20 C -0.10 -1.32 4.51 -104.91 -0.47 -1.79 16 21 C 0.01 0.17 6.82 -38.81 -0.26 -0.09 16 22 C -0.16 -2.17 9.86 -39.47 -0.39 -2.56 16 23 C 0.18 2.59 7.27 -17.33 -0.13 2.47 16 24 Cl -0.04 -0.56 29.10 -51.86 -1.51 -2.07 16 25 N -0.49 -7.21 10.32 -9.93 -0.10 -7.31 16 26 C 0.13 1.64 10.96 -17.04 -0.19 1.45 16 27 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 28 H 0.12 3.11 6.40 -52.49 -0.34 2.78 16 29 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.11 2.46 6.11 -52.49 -0.32 2.14 16 32 H 0.40 6.81 8.02 -40.82 -0.33 6.49 16 33 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.14 1.82 7.15 -52.49 -0.38 1.44 16 36 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.16 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 336.26 15.07 5.07 5.07 Total: -1.00 -29.19 336.26 -9.65 -38.84 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -3.43 Total: 12.49 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -5.26 Total: -18.17 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.45 Total: -38.17 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.05 Total: -10.48 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.49 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.51 Total: -2.07 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.19 -9.65 -38.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492911942.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.745 kcal (2) G-P(sol) polarization free energy of solvation -29.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds