Wall clock time and date at job start Tue Mar 31 2020 15:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30841 * 1 3 3 Si 1.86801 * 120.00100 * 2 1 4 4 H 1.48506 * 109.47271 * 240.00323 * 3 2 1 5 5 H 1.48504 * 109.47129 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47313 * 120.00452 * 3 2 1 7 7 C 1.39972 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99466 * 186.64215 * 7 2 1 9 9 C 1.41027 * 120.00301 * 6.63772 * 7 2 1 10 10 C 1.40748 * 120.30302 * 33.07931 * 9 7 2 11 11 C 1.36451 * 119.94628 * 180.28131 * 10 9 7 12 12 C 1.38890 * 120.59087 * 359.71829 * 11 10 9 13 13 C 1.38187 * 120.62163 * 0.02562 * 12 11 10 14 14 C 1.38708 * 120.03116 * 359.97438 * 13 12 11 15 15 N 1.38948 * 120.29291 * 180.02562 * 14 13 12 16 16 C 1.34776 * 119.99635 * 33.76695 * 15 14 13 17 17 O 1.21716 * 120.00310 * 355.20216 * 16 15 14 18 18 C 1.46310 * 119.99950 * 175.20968 * 16 15 14 19 19 C 1.34900 * 120.00023 * 172.79318 * 18 16 15 20 20 C 1.47136 * 120.00204 * 346.57789 * 19 18 16 21 21 C 1.40339 * 120.57276 * 317.42983 * 20 19 18 22 22 C 1.38186 * 118.28625 * 179.75450 * 21 20 19 23 23 C 1.38596 * 119.32607 * 0.51645 * 22 21 20 24 24 Cl 1.73592 * 119.45008 * 179.71971 * 23 22 21 25 25 N 1.32050 * 121.10439 * 359.74287 * 23 22 21 26 26 C 1.31665 * 121.88890 * 359.97438 * 25 23 22 27 27 H 0.97003 * 119.99904 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03050 * 359.97438 * 10 9 7 29 29 H 1.07999 * 119.70763 * 179.74673 * 11 10 9 30 30 H 1.08000 * 119.69113 * 180.02562 * 12 11 10 31 31 H 1.08000 * 119.98506 * 179.97438 * 13 12 11 32 32 H 0.96996 * 120.00014 * 214.03750 * 15 14 13 33 33 H 1.07996 * 119.99804 * 352.78808 * 18 16 15 34 34 H 1.07999 * 120.00016 * 166.57337 * 19 18 16 35 35 H 1.07998 * 120.85214 * 359.97291 * 21 20 19 36 36 H 1.07999 * 120.33793 * 180.21061 * 22 21 20 37 37 H 1.08001 * 119.73049 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6965 -1.2126 5 1 1.2774 2.7465 0.0006 6 1 3.0963 1.6964 1.2125 7 6 2.0083 -1.2122 -0.0005 8 1 3.0828 -1.2153 0.1076 9 6 1.3103 -2.4294 -0.1423 10 6 0.1463 -2.4929 -0.9310 11 6 -0.5266 -3.6731 -1.0585 12 6 -0.0704 -4.8193 -0.4203 13 6 1.0725 -4.7854 0.3556 14 6 1.7766 -3.5994 0.5029 15 7 2.9268 -3.5592 1.2814 16 6 3.7410 -4.6318 1.3364 17 8 3.4256 -5.6648 0.7753 18 6 5.0042 -4.5545 2.0707 19 6 5.7493 -5.6647 2.2497 20 6 5.1720 -6.9902 1.9766 21 6 3.8658 -7.2982 2.3869 22 6 3.3690 -8.5556 2.1013 23 6 4.1722 -9.4676 1.4349 24 17 3.5540 -11.0506 1.0810 25 7 5.4001 -9.1526 1.0652 26 6 5.9173 -7.9665 1.3088 27 1 -0.4850 0.8401 0.0004 28 1 -0.2168 -1.6072 -1.4310 29 1 -1.4216 -3.7166 -1.6614 30 1 -0.6141 -5.7458 -0.5315 31 1 1.4177 -5.6827 0.8476 32 1 3.1417 -2.7606 1.7883 33 1 5.3400 -3.6087 2.4693 34 1 6.7697 -5.5805 2.5934 35 1 3.2631 -6.5699 2.9092 36 1 2.3668 -8.8267 2.3987 37 1 6.9257 -7.7464 0.9910 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492911942.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:20 Heat of formation + Delta-G solvation = 25.388059 kcal Electronic energy + Delta-G solvation = -24239.266860 eV Core-core repulsion = 20586.150452 eV Total energy + Delta-G solvation = -3653.116409 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.58500 -40.73062 -39.01514 -37.66339 -35.69496 -35.46204 -34.96364 -33.16575 -31.52473 -31.24468 -29.91710 -27.16617 -25.62445 -24.66623 -23.73026 -22.95325 -21.74773 -20.35648 -19.17272 -18.72561 -18.06850 -18.04509 -17.46704 -16.94277 -16.18575 -15.98870 -15.85299 -15.49018 -15.15741 -14.85526 -14.74845 -14.41461 -14.14860 -14.11999 -13.95811 -13.51925 -13.10182 -12.85041 -12.83885 -12.74068 -12.66670 -12.35458 -12.15380 -11.92325 -11.60348 -11.39488 -11.06019 -10.93345 -10.65459 -10.42690 -10.32975 -9.33902 -9.24065 -8.78357 -8.46534 -6.33080 -0.52629 0.23124 0.64352 0.80112 0.99507 1.15576 1.43342 1.53567 1.55295 2.23671 2.36746 2.62009 2.72741 2.81877 3.49670 3.67241 3.72044 3.88439 3.95344 4.01356 4.17756 4.50609 4.60196 4.63779 4.67683 4.76697 4.86041 4.96217 5.11607 5.18371 5.23624 5.31373 5.45104 5.49050 5.54068 5.81088 5.87182 6.15438 6.18663 6.27813 6.66670 6.70716 6.79950 6.97375 7.04507 7.47594 8.41464 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.003180 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.789351 B = 8803.226073 C =10059.450544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.251 1.251 7 C -0.491 4.491 8 H 0.083 0.917 9 C 0.073 3.927 10 C -0.166 4.166 11 C -0.123 4.123 12 C -0.226 4.226 13 C -0.100 4.100 14 C 0.018 3.982 15 N -0.630 5.630 16 C 0.514 3.486 17 O -0.565 6.565 18 C -0.199 4.199 19 C -0.013 4.013 20 C -0.113 4.113 21 C 0.001 3.999 22 C -0.169 4.169 23 C 0.163 3.837 24 Cl -0.039 7.039 25 N -0.509 5.509 26 C 0.125 3.875 27 H 0.285 0.715 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.412 0.588 33 H 0.172 0.828 34 H 0.192 0.808 35 H 0.133 0.867 36 H 0.151 0.849 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.289 -7.559 8.109 15.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.175 1.175 7 C -0.522 4.522 8 H 0.101 0.899 9 C 0.069 3.931 10 C -0.186 4.186 11 C -0.142 4.142 12 C -0.245 4.245 13 C -0.120 4.120 14 C -0.077 4.077 15 N -0.271 5.271 16 C 0.306 3.694 17 O -0.447 6.447 18 C -0.219 4.219 19 C -0.033 4.033 20 C -0.115 4.115 21 C -0.025 4.025 22 C -0.190 4.190 23 C 0.000 4.000 24 Cl -0.010 7.010 25 N -0.220 5.220 26 C -0.032 4.032 27 H 0.096 0.904 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.249 0.751 33 H 0.189 0.811 34 H 0.209 0.791 35 H 0.151 0.849 36 H 0.168 0.832 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 11.329 -8.865 7.271 16.119 hybrid contribution -0.964 1.565 0.151 1.844 sum 10.365 -7.300 7.422 14.691 Atomic orbital electron populations 1.69859 1.08918 1.30277 1.37253 1.26708 0.95512 1.04272 0.91421 0.85228 0.78535 0.75702 0.80113 1.19052 1.20163 1.17489 1.19511 0.95229 0.90549 1.46861 0.89864 1.17779 0.93480 0.92328 0.89483 1.20953 0.99018 0.96708 1.01952 1.20716 0.99482 0.93423 1.00584 1.20655 0.99879 0.97877 1.06116 1.20861 0.94449 0.96694 1.00040 1.17903 0.92257 0.95707 1.01872 1.42889 1.21383 1.17739 1.45100 1.19313 0.85077 0.83042 0.81980 1.90807 1.75548 1.29995 1.48329 1.23193 0.93924 1.02138 1.02652 1.22594 0.99898 0.88063 0.92770 1.20266 0.94743 0.96333 1.00171 1.21663 0.93383 0.93996 0.93481 1.21778 1.01698 0.93790 1.01684 1.21786 0.91768 0.88736 0.97747 1.98377 1.85186 1.23715 1.93746 1.66872 1.12498 1.22086 1.20566 1.23274 1.00597 0.85849 0.93440 0.90448 0.87840 0.87413 0.87085 0.86642 0.75054 0.81102 0.79145 0.84891 0.83157 0.78830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -41.88 10.93 21.83 0.24 -41.64 16 2 C 0.03 1.62 5.30 85.26 0.45 2.08 16 3 Si 0.98 35.42 29.57 68.60 2.03 37.45 16 4 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 5 H -0.28 -9.79 7.11 99.48 0.71 -9.08 16 6 H -0.25 -8.38 7.11 99.48 0.71 -7.68 16 7 C -0.49 -24.00 8.26 23.37 0.19 -23.80 16 8 H 0.08 3.77 7.55 -2.91 -0.02 3.75 16 9 C 0.07 3.73 5.53 -21.18 -0.12 3.61 16 10 C -0.17 -8.64 8.58 22.47 0.19 -8.45 16 11 C -0.12 -5.84 9.96 22.01 0.22 -5.62 16 12 C -0.23 -10.31 10.04 22.41 0.22 -10.08 16 13 C -0.10 -4.65 8.69 22.37 0.19 -4.45 16 14 C 0.02 0.82 6.35 38.93 0.25 1.07 16 15 N -0.63 -23.36 4.94 -306.18 -1.51 -24.88 16 16 C 0.51 16.77 6.61 86.34 0.57 17.34 16 17 O -0.56 -21.81 9.72 -4.40 -0.04 -21.85 16 18 C -0.20 -4.06 9.90 23.60 0.23 -3.83 16 19 C -0.01 -0.22 9.83 23.84 0.23 0.01 16 20 C -0.11 -2.60 4.51 -20.05 -0.09 -2.69 16 21 C 0.00 0.02 6.82 22.77 0.16 0.17 16 22 C -0.17 -4.54 9.86 22.34 0.22 -4.32 16 23 C 0.16 4.61 7.27 84.75 0.62 5.23 16 24 Cl -0.04 -0.98 29.10 -2.72 -0.08 -1.06 16 25 N -0.51 -14.37 10.32 -185.33 -1.91 -16.28 16 26 C 0.12 2.87 10.96 85.10 0.93 3.81 16 27 H 0.29 13.11 8.30 -92.71 -0.77 12.34 16 28 H 0.10 5.62 6.40 -2.91 -0.02 5.60 16 29 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 30 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 31 H 0.12 5.17 6.11 -2.91 -0.02 5.16 16 32 H 0.41 13.55 8.02 -92.71 -0.74 12.80 16 33 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.19 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.13 3.49 7.15 -2.91 -0.02 3.47 16 36 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 37 H 0.19 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -65.28 336.26 3.59 -61.70 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: 0.39 Total: 36.48 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 4.48 Total: -29.92 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -3.19 Total: -82.80 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.04 Total: -21.85 kcal Atomic # 14 Polarization: 35.42 SS G_CDS: 2.03 Total: 37.45 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -65.28 3.59 -61.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492911942.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.085 kcal (2) G-P(sol) polarization free energy of solvation -65.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds