Wall clock time and date at job start Tue Mar 31 2020 15:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86798 * 119.99542 * 2 1 4 4 H 1.48503 * 109.47390 * 275.18531 * 3 2 1 5 5 H 1.48502 * 109.47575 * 35.18674 * 3 2 1 6 6 H 1.48502 * 109.47176 * 155.18760 * 3 2 1 7 7 C 1.39973 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00197 * 347.72601 * 7 2 1 9 9 C 1.41032 * 119.99863 * 167.71759 * 7 2 1 10 10 C 1.40753 * 120.30422 * 331.06230 * 9 7 2 11 11 C 1.36444 * 119.94068 * 180.30204 * 10 9 7 12 12 C 1.38896 * 120.59219 * 359.67144 * 11 10 9 13 13 C 1.38182 * 120.62362 * 0.02562 * 12 11 10 14 14 C 1.38703 * 120.03128 * 0.03560 * 13 12 11 15 15 N 1.38934 * 120.29022 * 179.97438 * 14 13 12 16 16 C 1.34772 * 120.00081 * 339.84514 * 15 14 13 17 17 O 1.21685 * 120.00029 * 354.60662 * 16 15 14 18 18 C 1.46569 * 119.99792 * 174.60122 * 16 15 14 19 19 C 1.34702 * 119.99725 * 180.02562 * 18 16 15 20 20 C 1.47385 * 119.99819 * 180.27476 * 19 18 16 21 21 C 1.40201 * 120.94204 * 179.72670 * 20 19 18 22 22 C 1.37929 * 118.99892 * 180.02562 * 21 20 19 23 23 N 1.31924 * 120.94460 * 359.97438 * 22 21 20 24 24 C 1.31958 * 122.10337 * 0.02562 * 23 22 21 25 25 Cl 1.73593 * 119.56003 * 180.02562 * 24 23 22 26 26 C 1.38199 * 120.88494 * 359.71185 * 24 23 22 27 27 H 0.97000 * 120.00207 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.03082 * 359.97438 * 10 9 7 29 29 H 1.08002 * 119.70369 * 179.69846 * 11 10 9 30 30 H 1.08007 * 119.68250 * 180.02562 * 12 11 10 31 31 H 1.07996 * 119.98274 * 180.02562 * 13 12 11 32 32 H 0.97002 * 119.99460 * 159.84860 * 15 14 13 33 33 H 1.08002 * 120.00446 * 0.02562 * 18 16 15 34 34 H 1.08002 * 119.99829 * 0.02562 * 19 18 16 35 35 H 1.08002 * 120.50183 * 359.97438 * 21 20 19 36 36 H 1.07995 * 119.52964 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.52196 * 180.30647 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3803 2.1098 -1.3943 5 1 1.4989 2.6186 0.8068 6 1 3.5904 1.4112 0.5875 7 6 2.0084 -1.2122 0.0005 8 1 1.4870 -2.1367 0.1998 9 6 3.3945 -1.2262 -0.2593 10 6 3.9736 -0.2387 -1.0782 11 6 5.3145 -0.2629 -1.3297 12 6 6.1193 -1.2517 -0.7786 13 6 5.5769 -2.2292 0.0338 14 6 4.2168 -2.2299 0.3055 15 7 3.6657 -3.2104 1.1212 16 6 4.3246 -4.3688 1.3217 17 8 5.3531 -4.5971 0.7127 18 6 3.8025 -5.3536 2.2734 19 6 4.4613 -6.5112 2.4742 20 6 3.9331 -7.5041 3.4268 21 6 4.5996 -8.7177 3.6468 22 6 4.0693 -9.6183 4.5469 23 7 2.9525 -9.3507 5.1962 24 6 2.2924 -8.2217 5.0203 25 17 0.8293 -7.9376 5.9103 26 6 2.7537 -7.2597 4.1419 27 1 -0.4850 0.8400 -0.0004 28 1 3.3564 0.5344 -1.5114 29 1 5.7540 0.4939 -1.9626 30 1 7.1790 -1.2567 -0.9871 31 1 6.2124 -2.9929 0.4571 32 1 2.8066 -3.0611 1.5462 33 1 2.8895 -5.1512 2.8137 34 1 5.3745 -6.7135 1.9343 35 1 5.5141 -8.9444 3.1188 36 1 4.5755 -10.5560 4.7226 37 1 2.2114 -6.3356 4.0062 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493502653.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:29 Heat of formation + Delta-G solvation = 37.169028 kcal Electronic energy + Delta-G solvation = -23300.150760 eV Core-core repulsion = 19647.545213 eV Total energy + Delta-G solvation = -3652.605547 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.58321 -39.83869 -37.60984 -36.94843 -35.08482 -34.04300 -33.70231 -31.53210 -31.03368 -30.53014 -28.73764 -25.61547 -24.86383 -23.89200 -22.59423 -21.51838 -20.24605 -19.42366 -17.88851 -17.50921 -17.26005 -16.59422 -16.30573 -16.13027 -15.29613 -14.86406 -14.63102 -14.45327 -14.18300 -14.08806 -13.80530 -13.40552 -13.11843 -12.63715 -12.38966 -12.24791 -12.13132 -11.88082 -11.76664 -11.56389 -11.27182 -11.07779 -11.04251 -10.79502 -10.04819 -10.01757 -9.87138 -9.57535 -9.42420 -9.39099 -9.07303 -8.91963 -7.71669 -7.12383 -7.05313 -4.59234 0.10204 0.56586 1.49341 1.70452 2.47720 2.62788 3.03645 3.13201 3.24443 3.30876 3.58329 3.66989 3.88516 4.03851 4.31585 4.44511 4.52321 4.54878 4.70103 4.91257 5.16063 5.27549 5.31744 5.37067 5.56320 6.00855 6.01986 6.03085 6.12266 6.20210 6.30149 6.55740 6.64137 6.89397 7.10107 7.25061 7.32847 7.41900 7.60089 7.76252 7.91186 8.16152 8.18430 8.48580 8.61813 8.74563 9.95620 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014955 B = 0.002756 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.860443 B =10158.949319 C =11842.951648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.084 3.916 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.239 1.239 7 C -0.451 4.451 8 H 0.090 0.910 9 C 0.080 3.920 10 C -0.221 4.221 11 C -0.090 4.090 12 C -0.225 4.225 13 C -0.090 4.090 14 C 0.028 3.972 15 N -0.622 5.622 16 C 0.522 3.478 17 O -0.539 6.539 18 C -0.158 4.158 19 C -0.059 4.059 20 C 0.001 3.999 21 C -0.155 4.155 22 C 0.119 3.881 23 N -0.482 5.482 24 C 0.178 3.822 25 Cl -0.029 7.029 26 C -0.147 4.147 27 H 0.287 0.713 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.132 0.868 32 H 0.410 0.590 33 H 0.131 0.869 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.168 0.832 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.371 -12.693 8.894 16.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.135 4.135 3 Si 0.741 3.259 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.162 1.162 7 C -0.480 4.480 8 H 0.108 0.892 9 C 0.076 3.924 10 C -0.241 4.241 11 C -0.109 4.109 12 C -0.245 4.245 13 C -0.110 4.110 14 C -0.067 4.067 15 N -0.262 5.262 16 C 0.311 3.689 17 O -0.420 6.420 18 C -0.180 4.180 19 C -0.079 4.079 20 C -0.007 4.007 21 C -0.175 4.175 22 C -0.037 4.037 23 N -0.194 5.194 24 C 0.014 3.986 25 Cl 0.000 7.000 26 C -0.168 4.168 27 H 0.097 0.903 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.149 0.851 32 H 0.247 0.753 33 H 0.149 0.851 34 H 0.164 0.836 35 H 0.167 0.833 36 H 0.185 0.815 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.301 -13.354 9.198 16.776 hybrid contribution -0.257 1.519 -0.402 1.592 sum 4.044 -11.835 8.796 15.290 Atomic orbital electron populations 1.69646 1.07964 1.30418 1.35243 1.26148 0.94835 1.01722 0.90823 0.86284 0.81287 0.79470 0.78826 1.19784 1.22137 1.16236 1.19263 0.91122 0.95511 1.42094 0.89212 1.17477 0.92908 0.91559 0.90442 1.20505 0.95078 1.02986 1.05501 1.20383 0.93966 0.97520 0.98986 1.20364 0.98108 0.99273 1.06764 1.21149 0.93271 0.98368 0.98237 1.17654 0.91875 0.95480 1.01685 1.42853 1.23060 1.14329 1.45991 1.18224 0.85164 0.81996 0.83492 1.90700 1.24596 1.77569 1.49106 1.23246 1.00905 0.94902 0.98934 1.22161 0.99529 0.91574 0.94637 1.19392 0.93015 0.94142 0.94194 1.22484 1.01587 0.93747 0.99657 1.22619 0.90389 0.99251 0.91436 1.66920 1.08316 1.19455 1.24713 1.21520 0.91081 0.91727 0.94249 1.98424 1.32203 1.94925 1.74473 1.22161 0.97188 1.00686 0.96772 0.90285 0.88162 0.88789 0.88493 0.85089 0.75311 0.85102 0.83601 0.83328 0.81467 0.83113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.31 13.93 55.55 0.77 -19.53 16 2 C 0.08 2.06 5.48 -17.32 -0.09 1.97 16 3 Si 0.91 19.87 24.36 -169.99 -4.14 15.73 16 4 H -0.27 -5.79 6.78 56.52 0.38 -5.41 16 5 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.24 -5.33 6.43 56.52 0.36 -4.96 16 7 C -0.45 -11.20 8.88 -37.87 -0.34 -11.53 16 8 H 0.09 2.26 7.35 -52.49 -0.39 1.88 16 9 C 0.08 1.94 5.21 -106.64 -0.56 1.38 16 10 C -0.22 -5.18 6.83 -39.28 -0.27 -5.45 16 11 C -0.09 -1.93 9.96 -39.98 -0.40 -2.33 16 12 C -0.23 -4.78 10.04 -39.36 -0.39 -5.18 16 13 C -0.09 -2.00 8.77 -39.43 -0.35 -2.34 16 14 C 0.03 0.62 6.53 -83.22 -0.54 0.08 16 15 N -0.62 -11.82 5.16 -10.70 -0.06 -11.88 16 16 C 0.52 9.02 7.59 -12.90 -0.10 8.93 16 17 O -0.54 -10.78 13.14 5.20 0.07 -10.71 16 18 C -0.16 -1.98 9.44 -37.48 -0.35 -2.33 16 19 C -0.06 -0.65 9.50 -37.11 -0.35 -1.00 16 20 C 0.00 0.01 5.90 -104.75 -0.62 -0.61 16 21 C -0.15 -1.22 9.90 -38.96 -0.39 -1.61 16 22 C 0.12 0.97 11.17 -17.62 -0.20 0.78 16 23 N -0.48 -5.25 10.31 -10.46 -0.11 -5.35 16 24 C 0.18 1.93 7.27 -17.51 -0.13 1.81 16 25 Cl -0.03 -0.30 29.10 -51.86 -1.51 -1.81 16 26 C -0.15 -1.48 9.25 -38.91 -0.36 -1.84 16 27 H 0.29 6.58 8.30 -40.82 -0.34 6.24 16 28 H 0.10 2.32 4.17 -52.49 -0.22 2.10 16 29 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 31 H 0.13 2.86 5.44 -52.49 -0.29 2.57 16 32 H 0.41 7.09 7.42 -40.82 -0.30 6.79 16 33 H 0.13 1.31 6.17 -52.49 -0.32 0.99 16 34 H 0.15 1.60 7.52 -52.49 -0.39 1.20 16 35 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.15 1.31 6.30 -52.49 -0.33 0.98 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -29.28 332.89 -8.51 -37.79 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -3.12 Total: 10.03 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -5.43 Total: -19.28 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.61 Total: -36.77 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.14 Total: 15.73 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.51 Total: -1.81 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.28 -8.51 -37.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493502653.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.960 kcal (2) G-P(sol) polarization free energy of solvation -29.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds