Wall clock time and date at job start Tue Mar 31 2020 15:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86798 * 119.99542 * 2 1 4 4 H 1.48503 * 109.47390 * 275.18531 * 3 2 1 5 5 H 1.48502 * 109.47575 * 35.18674 * 3 2 1 6 6 H 1.48502 * 109.47176 * 155.18760 * 3 2 1 7 7 C 1.39973 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00197 * 347.72601 * 7 2 1 9 9 C 1.41032 * 119.99863 * 167.71759 * 7 2 1 10 10 C 1.40753 * 120.30422 * 331.06230 * 9 7 2 11 11 C 1.36444 * 119.94068 * 180.30204 * 10 9 7 12 12 C 1.38896 * 120.59219 * 359.67144 * 11 10 9 13 13 C 1.38182 * 120.62362 * 0.02562 * 12 11 10 14 14 C 1.38703 * 120.03128 * 0.03560 * 13 12 11 15 15 N 1.38934 * 120.29022 * 179.97438 * 14 13 12 16 16 C 1.34772 * 120.00081 * 339.84514 * 15 14 13 17 17 O 1.21685 * 120.00029 * 354.60662 * 16 15 14 18 18 C 1.46569 * 119.99792 * 174.60122 * 16 15 14 19 19 C 1.34702 * 119.99725 * 180.02562 * 18 16 15 20 20 C 1.47385 * 119.99819 * 180.27476 * 19 18 16 21 21 C 1.40201 * 120.94204 * 179.72670 * 20 19 18 22 22 C 1.37929 * 118.99892 * 180.02562 * 21 20 19 23 23 N 1.31924 * 120.94460 * 359.97438 * 22 21 20 24 24 C 1.31958 * 122.10337 * 0.02562 * 23 22 21 25 25 Cl 1.73593 * 119.56003 * 180.02562 * 24 23 22 26 26 C 1.38199 * 120.88494 * 359.71185 * 24 23 22 27 27 H 0.97000 * 120.00207 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.03082 * 359.97438 * 10 9 7 29 29 H 1.08002 * 119.70369 * 179.69846 * 11 10 9 30 30 H 1.08007 * 119.68250 * 180.02562 * 12 11 10 31 31 H 1.07996 * 119.98274 * 180.02562 * 13 12 11 32 32 H 0.97002 * 119.99460 * 159.84860 * 15 14 13 33 33 H 1.08002 * 120.00446 * 0.02562 * 18 16 15 34 34 H 1.08002 * 119.99829 * 0.02562 * 19 18 16 35 35 H 1.08002 * 120.50183 * 359.97438 * 21 20 19 36 36 H 1.07995 * 119.52964 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.52196 * 180.30647 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3803 2.1098 -1.3943 5 1 1.4989 2.6186 0.8068 6 1 3.5904 1.4112 0.5875 7 6 2.0084 -1.2122 0.0005 8 1 1.4870 -2.1367 0.1998 9 6 3.3945 -1.2262 -0.2593 10 6 3.9736 -0.2387 -1.0782 11 6 5.3145 -0.2629 -1.3297 12 6 6.1193 -1.2517 -0.7786 13 6 5.5769 -2.2292 0.0338 14 6 4.2168 -2.2299 0.3055 15 7 3.6657 -3.2104 1.1212 16 6 4.3246 -4.3688 1.3217 17 8 5.3531 -4.5971 0.7127 18 6 3.8025 -5.3536 2.2734 19 6 4.4613 -6.5112 2.4742 20 6 3.9331 -7.5041 3.4268 21 6 4.5996 -8.7177 3.6468 22 6 4.0693 -9.6183 4.5469 23 7 2.9525 -9.3507 5.1962 24 6 2.2924 -8.2217 5.0203 25 17 0.8293 -7.9376 5.9103 26 6 2.7537 -7.2597 4.1419 27 1 -0.4850 0.8400 -0.0004 28 1 3.3564 0.5344 -1.5114 29 1 5.7540 0.4939 -1.9626 30 1 7.1790 -1.2567 -0.9871 31 1 6.2124 -2.9929 0.4571 32 1 2.8066 -3.0611 1.5462 33 1 2.8895 -5.1512 2.8137 34 1 5.3745 -6.7135 1.9343 35 1 5.5141 -8.9444 3.1188 36 1 4.5755 -10.5560 4.7226 37 1 2.2114 -6.3356 4.0062 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493502653.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:28 Heat of formation + Delta-G solvation = 20.413480 kcal Electronic energy + Delta-G solvation = -23300.877335 eV Core-core repulsion = 19647.545213 eV Total energy + Delta-G solvation = -3653.332123 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.50436 -41.15183 -39.22485 -37.72478 -36.02150 -35.61689 -35.45539 -32.31967 -32.28304 -31.96412 -30.28249 -27.14749 -26.08435 -24.68197 -23.99910 -22.93607 -21.74920 -20.64234 -19.39541 -18.81212 -18.61407 -17.67501 -17.41456 -16.93782 -16.78772 -16.18865 -15.87192 -15.59078 -15.55153 -15.25416 -15.00632 -14.82577 -14.56384 -14.10829 -13.94733 -13.49931 -13.43086 -12.96605 -12.86203 -12.75427 -12.64250 -12.49683 -12.35328 -12.06217 -11.76217 -11.60633 -11.21220 -11.13678 -10.78186 -10.53050 -10.12288 -9.92711 -9.50027 -8.88848 -8.79001 -6.44988 -0.76479 -0.13270 0.57572 0.74089 0.82320 1.02455 1.29191 1.42379 1.51077 2.12521 2.23806 2.31061 2.63359 2.67968 3.27243 3.48368 3.52939 3.75850 3.82984 3.92474 4.05509 4.21006 4.29523 4.46186 4.59433 4.64412 4.65342 4.78756 4.82526 4.93293 5.14479 5.22726 5.29110 5.33539 5.43363 5.58498 5.70198 5.92722 6.01798 6.11460 6.37123 6.57229 6.62598 6.80881 6.82441 7.25449 8.17904 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014955 B = 0.002756 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.860443 B =10158.949319 C =11842.951648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.051 3.949 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.248 1.248 7 C -0.472 4.472 8 H 0.071 0.929 9 C 0.057 3.943 10 C -0.235 4.235 11 C -0.098 4.098 12 C -0.215 4.215 13 C -0.109 4.109 14 C 0.028 3.972 15 N -0.631 5.631 16 C 0.527 3.473 17 O -0.568 6.568 18 C -0.183 4.183 19 C -0.023 4.023 20 C -0.016 4.016 21 C -0.138 4.138 22 C 0.118 3.882 23 N -0.502 5.502 24 C 0.159 3.841 25 Cl -0.035 7.035 26 C -0.148 4.148 27 H 0.293 0.707 28 H 0.100 0.900 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.415 0.585 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.181 0.819 36 H 0.203 0.797 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.506 -13.789 9.185 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.164 4.164 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.172 1.172 7 C -0.501 4.501 8 H 0.089 0.911 9 C 0.053 3.947 10 C -0.255 4.255 11 C -0.117 4.117 12 C -0.234 4.234 13 C -0.129 4.129 14 C -0.068 4.068 15 N -0.272 5.272 16 C 0.318 3.682 17 O -0.450 6.450 18 C -0.204 4.204 19 C -0.042 4.042 20 C -0.024 4.024 21 C -0.157 4.157 22 C -0.038 4.038 23 N -0.214 5.214 24 C -0.004 4.004 25 Cl -0.006 7.006 26 C -0.169 4.169 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.253 0.747 33 H 0.170 0.830 34 H 0.168 0.832 35 H 0.198 0.802 36 H 0.220 0.780 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.419 -14.464 9.502 18.458 hybrid contribution -0.710 1.570 -0.448 1.780 sum 5.710 -12.894 9.055 16.758 Atomic orbital electron populations 1.69672 1.08830 1.31351 1.37350 1.26699 0.95330 1.03821 0.90516 0.85551 0.79788 0.76900 0.79077 1.19002 1.21206 1.17182 1.19225 0.91737 0.95186 1.44001 0.91134 1.17656 0.92830 0.92852 0.91408 1.20699 0.96201 1.02979 1.05603 1.20724 0.93269 0.98395 0.99269 1.20798 0.99650 0.98022 1.04931 1.21371 0.93190 0.99122 0.99199 1.17909 0.92189 0.95498 1.01155 1.42938 1.23585 1.14598 1.46039 1.18877 0.84290 0.81805 0.83190 1.90662 1.25852 1.78100 1.50425 1.23024 1.02809 0.94736 0.99841 1.22274 0.98450 0.90593 0.92907 1.19383 0.93552 0.94857 0.94646 1.22865 1.01895 0.92347 0.98590 1.23252 0.89501 1.00465 0.90584 1.66941 1.09374 1.19569 1.25498 1.21606 0.91449 0.92284 0.95034 1.98416 1.32593 1.94988 1.74648 1.22278 0.97364 1.00831 0.96433 0.89642 0.88235 0.85555 0.85501 0.84755 0.74716 0.82965 0.83244 0.80197 0.78025 0.82451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -43.68 13.93 21.83 0.30 -43.38 16 2 C 0.05 2.59 5.48 85.26 0.47 3.06 16 3 Si 0.96 41.07 24.36 68.60 1.67 42.74 16 4 H -0.26 -10.84 6.78 99.48 0.67 -10.17 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 6 H -0.25 -10.84 6.43 99.48 0.64 -10.20 16 7 C -0.47 -24.23 8.88 23.38 0.21 -24.02 16 8 H 0.07 3.75 7.35 -2.91 -0.02 3.73 16 9 C 0.06 2.76 5.21 -21.17 -0.11 2.65 16 10 C -0.24 -10.88 6.83 22.47 0.15 -10.73 16 11 C -0.10 -4.01 9.96 22.01 0.22 -3.80 16 12 C -0.21 -8.63 10.04 22.41 0.22 -8.40 16 13 C -0.11 -4.72 8.77 22.37 0.20 -4.52 16 14 C 0.03 1.27 6.53 38.94 0.25 1.52 16 15 N -0.63 -24.35 5.16 -305.98 -1.58 -25.93 16 16 C 0.53 18.07 7.59 86.42 0.66 18.73 16 17 O -0.57 -22.40 13.14 -4.30 -0.06 -22.46 16 18 C -0.18 -4.38 9.44 23.63 0.22 -4.16 16 19 C -0.02 -0.44 9.50 23.87 0.23 -0.22 16 20 C -0.02 -0.28 5.90 -19.95 -0.12 -0.39 16 21 C -0.14 -1.67 9.90 22.67 0.22 -1.45 16 22 C 0.12 1.54 11.17 84.61 0.94 2.48 16 23 N -0.50 -9.92 10.31 -187.00 -1.93 -11.85 16 24 C 0.16 3.26 7.27 84.66 0.62 3.88 16 25 Cl -0.03 -0.71 29.10 -2.72 -0.08 -0.79 16 26 C -0.15 -2.75 9.25 22.71 0.21 -2.54 16 27 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 28 H 0.10 4.54 4.17 -2.91 -0.01 4.53 16 29 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 30 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 31 H 0.14 5.74 5.44 -2.91 -0.02 5.72 16 32 H 0.42 14.90 7.42 -92.71 -0.69 14.22 16 33 H 0.15 2.92 6.17 -2.91 -0.02 2.90 16 34 H 0.15 2.89 7.52 -2.91 -0.02 2.86 16 35 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 36 H 0.20 1.09 8.06 -2.91 -0.02 1.06 16 37 H 0.16 2.58 6.30 -2.91 -0.02 2.57 16 Total: -1.00 -63.97 332.89 3.29 -60.68 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.36 Total: 28.89 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 4.59 Total: -27.91 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -3.20 Total: -81.16 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.06 Total: -22.46 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.67 Total: 42.74 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -63.97 3.29 -60.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493502653.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.098 kcal (2) G-P(sol) polarization free energy of solvation -63.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds