Wall clock time and date at job start Tue Mar 31 2020 15:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86798 * 120.00239 * 2 1 4 4 H 1.48494 * 109.47258 * 240.00183 * 3 2 1 5 5 H 1.48504 * 109.47212 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47008 * 119.99872 * 3 2 1 7 7 C 1.39979 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99632 * 177.89847 * 7 2 1 9 9 C 1.41033 * 119.99821 * 357.88970 * 7 2 1 10 10 C 1.40748 * 120.30829 * 326.11440 * 9 7 2 11 11 C 1.36447 * 119.94387 * 180.27457 * 10 9 7 12 12 C 1.38896 * 120.59025 * 359.70291 * 11 10 9 13 13 C 1.38184 * 120.62525 * 0.02562 * 12 11 10 14 14 C 1.38709 * 120.02847 * 359.97438 * 13 12 11 15 15 N 1.38933 * 120.29004 * 179.97438 * 14 13 12 16 16 C 1.34778 * 120.00177 * 327.32504 * 15 14 13 17 17 O 1.21685 * 119.99842 * 3.99601 * 16 15 14 18 18 C 1.46564 * 120.00409 * 183.99976 * 16 15 14 19 19 C 1.34693 * 120.00485 * 172.88239 * 18 16 15 20 20 C 1.47386 * 119.99645 * 349.13158 * 19 18 16 21 21 C 1.40202 * 120.94034 * 316.62405 * 20 19 18 22 22 C 1.37937 * 118.99310 * 179.70737 * 21 20 19 23 23 N 1.31923 * 120.94682 * 0.58381 * 22 21 20 24 24 C 1.31965 * 122.10007 * 359.71147 * 23 22 21 25 25 Cl 1.73597 * 119.55389 * 180.02562 * 24 23 22 26 26 C 1.38192 * 120.88671 * 359.97438 * 24 23 22 27 27 H 0.97000 * 119.99794 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.02763 * 359.97322 * 10 9 7 29 29 H 1.07999 * 119.70202 * 179.72346 * 11 10 9 30 30 H 1.07996 * 119.68683 * 180.02562 * 12 11 10 31 31 H 1.08001 * 119.98405 * 179.97438 * 13 12 11 32 32 H 0.96999 * 120.00090 * 147.31912 * 15 14 13 33 33 H 1.08010 * 119.99697 * 352.60388 * 18 16 15 34 34 H 1.08000 * 120.00624 * 169.13458 * 19 18 16 35 35 H 1.07992 * 120.50232 * 359.97438 * 21 20 19 36 36 H 1.08001 * 119.52473 * 180.27171 * 22 21 20 37 37 H 1.08003 * 120.52309 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0962 1.6964 -1.2125 5 1 1.2775 2.7465 0.0006 6 1 3.0963 1.6963 1.2126 7 6 2.0083 -1.2123 -0.0005 8 1 3.0877 -1.2126 -0.0348 9 6 1.3037 -2.4332 0.0439 10 6 0.0973 -2.5313 0.7621 11 6 -0.5754 -3.7177 0.8047 12 6 -0.0838 -4.8333 0.1392 13 6 1.0954 -4.7624 -0.5777 14 6 1.8002 -3.5693 -0.6383 15 7 2.9867 -3.4921 -1.3571 16 6 3.7971 -4.5660 -1.4374 17 8 3.4560 -5.6239 -0.9424 18 6 5.0893 -4.4596 -2.1209 19 6 5.9602 -5.4861 -2.0784 20 6 5.7268 -6.6129 -1.1575 21 6 5.3111 -6.3906 0.1629 22 6 5.0986 -7.4750 0.9885 23 7 5.2920 -8.7059 0.5550 24 6 5.6885 -8.9611 -0.6775 25 17 5.9217 -10.6068 -1.1784 26 6 5.9194 -7.9361 -1.5751 27 1 -0.4850 0.8401 0.0004 28 1 -0.2932 -1.6696 1.2830 29 1 -1.4985 -3.7898 1.3607 30 1 -0.6283 -5.7650 0.1824 31 1 1.4684 -5.6364 -1.0909 32 1 3.2318 -2.6653 -1.8012 33 1 5.3412 -3.5596 -2.6624 34 1 6.8297 -5.4836 -2.7191 35 1 5.1555 -5.3858 0.5267 36 1 4.7741 -7.3138 2.0059 37 1 6.2434 -8.1517 -2.5825 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493502654.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:32 Heat of formation + Delta-G solvation = 43.556010 kcal Electronic energy + Delta-G solvation = -24260.924063 eV Core-core repulsion = 20608.595476 eV Total energy + Delta-G solvation = -3652.328587 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.41073 -39.42807 -37.41588 -36.58183 -34.62809 -33.77442 -33.67659 -31.12493 -30.73513 -29.66963 -28.48472 -25.49063 -24.54158 -23.46084 -22.44798 -21.24787 -20.23035 -19.22455 -17.71535 -17.26134 -16.67905 -16.19295 -16.02000 -15.80997 -15.16007 -14.65391 -14.36612 -14.31589 -14.02768 -13.70323 -13.65752 -13.04842 -12.72907 -12.49748 -12.29159 -11.89982 -11.81394 -11.68792 -11.34186 -11.31628 -11.24630 -11.05528 -10.57716 -10.53585 -10.13506 -9.83647 -9.58333 -9.41627 -9.33871 -9.13834 -9.01412 -8.28993 -7.39635 -7.03548 -6.71418 -4.51719 0.57665 1.11719 1.76329 1.88398 2.65853 2.88508 2.98894 2.99786 3.12929 3.67805 3.79539 3.83239 3.87023 4.39170 4.58573 4.63619 4.94761 5.00767 5.10199 5.23049 5.42811 5.54037 5.63848 5.73102 5.94347 6.09440 6.26827 6.34522 6.45785 6.51949 6.58034 6.86820 6.98579 7.10398 7.20375 7.58310 7.63739 7.83585 7.88794 8.01985 8.04014 8.32325 8.47959 8.72649 8.75850 8.92667 10.14604 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019194 B = 0.003108 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.462868 B = 9006.011056 C = 9904.454602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.472 4.472 8 H 0.074 0.926 9 C 0.101 3.899 10 C -0.139 4.139 11 C -0.117 4.117 12 C -0.217 4.217 13 C -0.090 4.090 14 C 0.016 3.984 15 N -0.622 5.622 16 C 0.513 3.487 17 O -0.531 6.531 18 C -0.173 4.173 19 C -0.055 4.055 20 C -0.004 4.004 21 C -0.080 4.080 22 C 0.106 3.894 23 N -0.477 5.477 24 C 0.163 3.837 25 Cl -0.047 7.047 26 C -0.142 4.142 27 H 0.280 0.720 28 H 0.125 0.875 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.404 0.596 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.136 0.864 36 H 0.162 0.838 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.693 -6.398 -4.146 13.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.502 4.502 8 H 0.093 0.907 9 C 0.098 3.902 10 C -0.159 4.159 11 C -0.136 4.136 12 C -0.237 4.237 13 C -0.110 4.110 14 C -0.078 4.078 15 N -0.262 5.262 16 C 0.302 3.698 17 O -0.411 6.411 18 C -0.194 4.194 19 C -0.075 4.075 20 C -0.012 4.012 21 C -0.100 4.100 22 C -0.049 4.049 23 N -0.189 5.189 24 C -0.002 4.002 25 Cl -0.019 7.019 26 C -0.163 4.163 27 H 0.092 0.908 28 H 0.143 0.857 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.130 0.870 32 H 0.240 0.760 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.154 0.846 36 H 0.179 0.821 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 11.129 -7.772 -3.274 13.963 hybrid contribution 0.381 1.882 -0.937 2.137 sum 11.510 -5.890 -4.212 13.598 Atomic orbital electron populations 1.69758 1.07308 1.29130 1.36872 1.25856 0.94891 1.01050 0.92423 0.86299 0.79885 0.80317 0.79767 1.19096 1.20355 1.19011 1.19262 0.94308 0.89974 1.46704 0.90748 1.17435 0.93030 0.91098 0.88686 1.21033 0.97186 0.96442 1.01234 1.20539 0.98788 0.93950 1.00296 1.20378 0.98821 0.97634 1.06877 1.20722 0.94064 0.96430 0.99769 1.17796 0.89893 0.97006 1.03092 1.42857 1.19944 1.14121 1.49282 1.18486 0.85131 0.84739 0.81428 1.90819 1.74928 1.27610 1.47781 1.23255 0.94485 0.99392 1.02283 1.22151 0.98736 0.91273 0.95319 1.19137 0.95840 0.92452 0.93774 1.22226 0.93690 1.01023 0.93024 1.22396 0.96497 0.85785 1.00213 1.66785 1.12060 1.24828 1.15192 1.21268 1.01022 0.86516 0.91380 1.98376 1.95098 1.18927 1.89504 1.21770 1.03052 0.91114 1.00363 0.90849 0.85748 0.89303 0.89190 0.86954 0.75991 0.84432 0.84037 0.84637 0.82102 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.59 10.78 55.55 0.60 -18.99 16 2 C 0.07 1.72 5.36 -17.32 -0.09 1.63 16 3 Si 0.91 17.33 29.56 -169.99 -5.02 12.30 16 4 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.47 -11.23 8.23 -37.87 -0.31 -11.54 16 8 H 0.07 1.66 7.58 -52.49 -0.40 1.26 16 9 C 0.10 2.49 5.54 -106.64 -0.59 1.90 16 10 C -0.14 -3.46 8.58 -39.28 -0.34 -3.79 16 11 C -0.12 -2.70 9.97 -39.98 -0.40 -3.09 16 12 C -0.22 -4.93 10.04 -39.36 -0.39 -5.32 16 13 C -0.09 -2.07 8.70 -39.43 -0.34 -2.42 16 14 C 0.02 0.37 6.37 -83.22 -0.53 -0.16 16 15 N -0.62 -11.59 4.97 -10.70 -0.05 -11.64 16 16 C 0.51 8.63 6.66 -12.90 -0.09 8.55 16 17 O -0.53 -10.30 9.42 5.20 0.05 -10.25 16 18 C -0.17 -2.05 9.95 -37.48 -0.37 -2.42 16 19 C -0.05 -0.58 9.87 -37.12 -0.37 -0.95 16 20 C 0.00 -0.05 4.57 -104.75 -0.48 -0.53 16 21 C -0.08 -1.15 6.70 -38.95 -0.26 -1.41 16 22 C 0.11 1.56 11.17 -17.62 -0.20 1.37 16 23 N -0.48 -7.49 10.32 -10.45 -0.11 -7.60 16 24 C 0.16 2.34 7.27 -17.51 -0.13 2.21 16 25 Cl -0.05 -0.59 29.10 -51.86 -1.51 -2.10 16 26 C -0.14 -1.80 9.67 -38.91 -0.38 -2.18 16 27 H 0.28 6.30 8.30 -40.82 -0.34 5.97 16 28 H 0.12 3.19 6.30 -52.49 -0.33 2.86 16 29 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.11 2.59 6.05 -52.49 -0.32 2.27 16 32 H 0.40 6.74 8.01 -40.82 -0.33 6.41 16 33 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 34 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.14 1.99 7.07 -52.49 -0.37 1.62 16 36 H 0.16 2.04 8.06 -52.49 -0.42 1.61 16 37 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 335.76 15.07 5.06 5.06 Total: -1.00 -28.60 335.76 -9.67 -38.27 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -3.42 Total: 13.13 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -5.26 Total: -18.16 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.44 Total: -38.23 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.05 Total: -10.25 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.02 Total: 12.30 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.51 Total: -2.10 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.60 -9.67 -38.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493502654.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.821 kcal (2) G-P(sol) polarization free energy of solvation -28.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds