Wall clock time and date at job start Tue Mar 31 2020 15:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86798 * 120.00239 * 2 1 4 4 H 1.48494 * 109.47258 * 240.00183 * 3 2 1 5 5 H 1.48504 * 109.47212 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47008 * 119.99872 * 3 2 1 7 7 C 1.39979 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99632 * 177.89847 * 7 2 1 9 9 C 1.41033 * 119.99821 * 357.88970 * 7 2 1 10 10 C 1.40748 * 120.30829 * 326.11440 * 9 7 2 11 11 C 1.36447 * 119.94387 * 180.27457 * 10 9 7 12 12 C 1.38896 * 120.59025 * 359.70291 * 11 10 9 13 13 C 1.38184 * 120.62525 * 0.02562 * 12 11 10 14 14 C 1.38709 * 120.02847 * 359.97438 * 13 12 11 15 15 N 1.38933 * 120.29004 * 179.97438 * 14 13 12 16 16 C 1.34778 * 120.00177 * 327.32504 * 15 14 13 17 17 O 1.21685 * 119.99842 * 3.99601 * 16 15 14 18 18 C 1.46564 * 120.00409 * 183.99976 * 16 15 14 19 19 C 1.34693 * 120.00485 * 172.88239 * 18 16 15 20 20 C 1.47386 * 119.99645 * 349.13158 * 19 18 16 21 21 C 1.40202 * 120.94034 * 316.62405 * 20 19 18 22 22 C 1.37937 * 118.99310 * 179.70737 * 21 20 19 23 23 N 1.31923 * 120.94682 * 0.58381 * 22 21 20 24 24 C 1.31965 * 122.10007 * 359.71147 * 23 22 21 25 25 Cl 1.73597 * 119.55389 * 180.02562 * 24 23 22 26 26 C 1.38192 * 120.88671 * 359.97438 * 24 23 22 27 27 H 0.97000 * 119.99794 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.02763 * 359.97322 * 10 9 7 29 29 H 1.07999 * 119.70202 * 179.72346 * 11 10 9 30 30 H 1.07996 * 119.68683 * 180.02562 * 12 11 10 31 31 H 1.08001 * 119.98405 * 179.97438 * 13 12 11 32 32 H 0.96999 * 120.00090 * 147.31912 * 15 14 13 33 33 H 1.08010 * 119.99697 * 352.60388 * 18 16 15 34 34 H 1.08000 * 120.00624 * 169.13458 * 19 18 16 35 35 H 1.07992 * 120.50232 * 359.97438 * 21 20 19 36 36 H 1.08001 * 119.52473 * 180.27171 * 22 21 20 37 37 H 1.08003 * 120.52309 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0962 1.6964 -1.2125 5 1 1.2775 2.7465 0.0006 6 1 3.0963 1.6963 1.2126 7 6 2.0083 -1.2123 -0.0005 8 1 3.0877 -1.2126 -0.0348 9 6 1.3037 -2.4332 0.0439 10 6 0.0973 -2.5313 0.7621 11 6 -0.5754 -3.7177 0.8047 12 6 -0.0838 -4.8333 0.1392 13 6 1.0954 -4.7624 -0.5777 14 6 1.8002 -3.5693 -0.6383 15 7 2.9867 -3.4921 -1.3571 16 6 3.7971 -4.5660 -1.4374 17 8 3.4560 -5.6239 -0.9424 18 6 5.0893 -4.4596 -2.1209 19 6 5.9602 -5.4861 -2.0784 20 6 5.7268 -6.6129 -1.1575 21 6 5.3111 -6.3906 0.1629 22 6 5.0986 -7.4750 0.9885 23 7 5.2920 -8.7059 0.5550 24 6 5.6885 -8.9611 -0.6775 25 17 5.9217 -10.6068 -1.1784 26 6 5.9194 -7.9361 -1.5751 27 1 -0.4850 0.8401 0.0004 28 1 -0.2932 -1.6696 1.2830 29 1 -1.4985 -3.7898 1.3607 30 1 -0.6283 -5.7650 0.1824 31 1 1.4684 -5.6364 -1.0909 32 1 3.2318 -2.6653 -1.8012 33 1 5.3412 -3.5596 -2.6624 34 1 6.8297 -5.4836 -2.7191 35 1 5.1555 -5.3858 0.5267 36 1 4.7741 -7.3138 2.0059 37 1 6.2434 -8.1517 -2.5825 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493502654.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:31 Heat of formation + Delta-G solvation = 28.573604 kcal Electronic energy + Delta-G solvation = -24261.573749 eV Core-core repulsion = 20608.595476 eV Total energy + Delta-G solvation = -3652.978273 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.60951 -40.74551 -39.03167 -37.61818 -35.84388 -35.45747 -35.13563 -32.18294 -31.85036 -31.45331 -30.11765 -27.19031 -25.76297 -24.53522 -23.77583 -22.93727 -21.77327 -20.48986 -19.22267 -18.70413 -18.06513 -17.47583 -17.20814 -17.02709 -16.66705 -15.99175 -15.82006 -15.62132 -15.24062 -14.96443 -14.71356 -14.64323 -14.35413 -14.00594 -13.55928 -13.45422 -13.03008 -12.93102 -12.82952 -12.70535 -12.68927 -12.32463 -12.14376 -11.97623 -11.57702 -11.44331 -11.05309 -10.91357 -10.71690 -10.52679 -10.03815 -9.48399 -9.23643 -8.76450 -8.44076 -6.33449 -0.43598 0.05777 0.68122 0.82300 1.00561 1.14981 1.44516 1.54741 1.55807 2.24708 2.39265 2.55083 2.73056 2.83285 3.41907 3.65969 3.71188 3.93101 4.00395 4.03576 4.21910 4.50488 4.57486 4.62579 4.63680 4.75709 4.76157 4.95570 5.12356 5.16032 5.23145 5.33029 5.43441 5.47543 5.53897 5.81520 5.87502 6.15778 6.19205 6.27551 6.67099 6.75000 6.79614 6.98121 7.04179 7.45107 8.43211 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.019194 B = 0.003108 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.462868 B = 9006.011056 C = 9904.454602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.033 3.967 3 Si 0.984 3.016 4 H -0.252 1.252 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.489 4.489 8 H 0.085 0.915 9 C 0.072 3.928 10 C -0.164 4.164 11 C -0.124 4.124 12 C -0.223 4.223 13 C -0.104 4.104 14 C 0.023 3.977 15 N -0.628 5.628 16 C 0.511 3.489 17 O -0.560 6.560 18 C -0.183 4.183 19 C -0.028 4.028 20 C -0.013 4.013 21 C -0.091 4.091 22 C 0.090 3.910 23 N -0.503 5.503 24 C 0.147 3.853 25 Cl -0.036 7.036 26 C -0.137 4.137 27 H 0.284 0.716 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.413 0.587 33 H 0.177 0.823 34 H 0.194 0.806 35 H 0.127 0.873 36 H 0.168 0.832 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.123 -5.972 -6.032 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.175 1.175 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.520 4.520 8 H 0.103 0.897 9 C 0.068 3.932 10 C -0.184 4.184 11 C -0.143 4.143 12 C -0.243 4.243 13 C -0.124 4.124 14 C -0.073 4.073 15 N -0.269 5.269 16 C 0.303 3.697 17 O -0.442 6.442 18 C -0.203 4.203 19 C -0.047 4.047 20 C -0.021 4.021 21 C -0.111 4.111 22 C -0.064 4.064 23 N -0.215 5.215 24 C -0.018 4.018 25 Cl -0.008 7.008 26 C -0.157 4.157 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.251 0.749 33 H 0.194 0.806 34 H 0.211 0.789 35 H 0.145 0.855 36 H 0.185 0.815 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 13.582 -7.363 -5.175 16.293 hybrid contribution -0.342 1.560 -0.344 1.634 sum 13.239 -5.803 -5.519 15.473 Atomic orbital electron populations 1.69857 1.08910 1.30157 1.37676 1.26729 0.95551 1.04315 0.91473 0.85202 0.78465 0.75622 0.80132 1.17536 1.20345 1.18890 1.19508 0.94823 0.90261 1.47378 0.89744 1.17769 0.93544 0.92364 0.89481 1.21045 0.98344 0.96626 1.02370 1.20725 0.99467 0.93542 1.00568 1.20642 0.98924 0.98251 1.06471 1.20843 0.94489 0.96629 1.00408 1.17882 0.90971 0.96135 1.02267 1.42886 1.19191 1.15368 1.49505 1.19370 0.86395 0.83478 0.80489 1.90812 1.75886 1.28619 1.48851 1.23262 0.92178 1.01682 1.03222 1.22638 0.99463 0.88857 0.93790 1.19532 0.95057 0.93807 0.93733 1.22233 0.94364 1.00386 0.94117 1.22581 0.96990 0.85932 1.00923 1.66773 1.13119 1.25242 1.16339 1.21631 1.01114 0.87607 0.91446 1.98374 1.95008 1.18157 1.89261 1.22096 1.01864 0.90375 1.01376 0.90531 0.87380 0.87412 0.87338 0.87124 0.74949 0.80582 0.78940 0.85538 0.81474 0.81022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -41.74 10.78 21.84 0.24 -41.50 16 2 C 0.03 1.51 5.36 85.26 0.46 1.97 16 3 Si 0.98 34.98 29.56 68.60 2.03 37.00 16 4 H -0.25 -8.29 7.11 99.48 0.71 -7.58 16 5 H -0.28 -9.79 7.11 99.48 0.71 -9.08 16 6 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 7 C -0.49 -23.49 8.23 23.38 0.19 -23.30 16 8 H 0.08 3.74 7.58 -2.91 -0.02 3.72 16 9 C 0.07 3.64 5.54 -21.17 -0.12 3.52 16 10 C -0.16 -8.44 8.58 22.46 0.19 -8.24 16 11 C -0.12 -5.86 9.97 22.01 0.22 -5.65 16 12 C -0.22 -10.25 10.04 22.41 0.22 -10.03 16 13 C -0.10 -4.84 8.70 22.37 0.19 -4.65 16 14 C 0.02 1.04 6.37 38.94 0.25 1.29 16 15 N -0.63 -23.01 4.97 -305.98 -1.52 -24.53 16 16 C 0.51 16.49 6.66 86.41 0.58 17.07 16 17 O -0.56 -21.46 9.42 -4.30 -0.04 -21.50 16 18 C -0.18 -3.66 9.95 23.63 0.24 -3.42 16 19 C -0.03 -0.47 9.87 23.87 0.24 -0.24 16 20 C -0.01 -0.31 4.57 -19.95 -0.09 -0.40 16 21 C -0.09 -2.58 6.70 22.68 0.15 -2.43 16 22 C 0.09 2.69 11.17 84.61 0.94 3.64 16 23 N -0.50 -15.72 10.32 -186.99 -1.93 -17.65 16 24 C 0.15 4.02 7.27 84.66 0.62 4.64 16 25 Cl -0.04 -0.86 29.10 -2.72 -0.08 -0.94 16 26 C -0.14 -3.11 9.67 22.70 0.22 -2.89 16 27 H 0.28 13.01 8.30 -92.71 -0.77 12.24 16 28 H 0.11 5.83 6.30 -2.91 -0.02 5.81 16 29 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 30 H 0.11 4.46 8.06 -2.91 -0.02 4.43 16 31 H 0.11 5.17 6.05 -2.91 -0.02 5.15 16 32 H 0.41 13.32 8.01 -92.71 -0.74 12.58 16 33 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.19 1.32 8.06 -2.91 -0.02 1.30 16 35 H 0.13 3.74 7.07 -2.91 -0.02 3.72 16 36 H 0.17 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -64.35 335.76 3.58 -60.76 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: 0.39 Total: 37.46 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 4.50 Total: -29.11 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -3.21 Total: -83.67 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.04 Total: -21.50 kcal Atomic # 14 Polarization: 34.98 SS G_CDS: 2.03 Total: 37.00 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -64.35 3.58 -60.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493502654.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.339 kcal (2) G-P(sol) polarization free energy of solvation -64.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds