Wall clock time and date at job start Tue Mar 31 2020 14:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86800 * 120.00391 * 2 1 4 4 H 1.48492 * 109.47384 * 239.99733 * 3 2 1 5 5 H 1.48500 * 109.46729 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46863 * 119.99667 * 3 2 1 7 7 C 1.39950 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00494 * 197.86002 * 7 2 1 9 9 C 1.41400 * 119.99539 * 17.85436 * 7 2 1 10 10 C 1.40720 * 120.24537 * 24.39535 * 9 7 2 11 11 C 1.37615 * 119.74367 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.25185 * 0.27407 * 11 10 9 13 13 C 1.50699 * 119.75289 * 179.70401 * 12 11 10 14 14 N 1.46506 * 109.47016 * 89.99742 * 13 12 11 15 15 N 1.40272 * 126.56135 * 270.02514 * 14 13 12 16 16 C 1.30428 * 107.71872 * 179.97438 * 15 14 13 17 17 C 1.47179 * 125.49060 * 179.97438 * 16 15 14 18 18 C 1.35088 * 125.27880 * 179.97438 * 17 16 15 19 19 C 1.37806 * 114.67179 * 179.97438 * 18 17 16 20 20 C 1.33704 * 115.09764 * 359.97438 * 19 18 17 21 21 S 1.75860 * 109.78353 * 359.75790 * 20 19 18 22 22 O 1.35138 * 109.01504 * 0.02562 * 16 15 14 23 23 C 1.34347 * 108.86349 * 359.76687 * 22 16 15 24 24 O 1.21704 * 126.23496 * 180.26441 * 23 22 16 25 25 C 1.38637 * 120.49605 * 359.44024 * 12 11 10 26 26 C 1.37614 * 120.25085 * 0.55928 * 25 12 11 27 27 H 0.97001 * 119.99459 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.12205 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.87216 * 179.97438 * 11 10 9 30 30 H 1.08995 * 109.47407 * 209.99698 * 13 12 11 31 31 H 1.09000 * 109.46523 * 329.99904 * 13 12 11 32 32 H 1.07995 * 122.65933 * 359.97438 * 18 17 16 33 33 H 1.08003 * 122.45090 * 179.97438 * 19 18 17 34 34 H 1.08004 * 125.10836 * 179.97438 * 20 19 18 35 35 H 1.08007 * 119.87424 * 180.26009 * 25 12 11 36 36 H 1.08003 * 120.13103 * 179.74367 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6963 1.2126 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2347 0.2863 9 6 1.3520 -2.4069 -0.3765 10 6 0.2208 -2.3616 -1.2123 11 6 -0.4100 -3.5308 -1.5714 12 6 0.0615 -4.7495 -1.1084 13 6 -0.6419 -6.0224 -1.5032 14 7 -0.0546 -6.5411 -2.7412 15 7 -0.4613 -6.2397 -4.0493 16 6 0.3112 -6.8996 -4.8672 17 6 0.2254 -6.8683 -6.3362 18 6 1.0283 -7.5533 -7.1794 19 6 0.7538 -7.3635 -8.5164 20 6 -0.2622 -6.5336 -8.7746 21 16 -0.9440 -5.9401 -7.2661 22 8 1.2023 -7.6175 -4.1484 23 6 0.9845 -7.3967 -2.8412 24 8 1.6093 -7.8812 -1.9159 25 6 1.1786 -4.8064 -0.2893 26 6 1.8252 -3.6500 0.0826 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1513 -1.4129 -1.5699 29 1 -1.2786 -3.4984 -2.2125 30 1 -0.5286 -6.7612 -0.7100 31 1 -1.7009 -5.8182 -1.6612 32 1 1.8222 -8.1983 -6.8331 33 1 1.3181 -7.8496 -9.2985 34 1 -0.6139 -6.2703 -9.7612 35 1 1.5398 -5.7616 0.0623 36 1 2.6928 -3.6963 0.7242 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000505684893.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:58 Heat of formation + Delta-G solvation = 51.730787 kcal Electronic energy + Delta-G solvation = -23840.057059 eV Core-core repulsion = 20190.126663 eV Total energy + Delta-G solvation = -3649.930396 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.12900 -38.32864 -37.86188 -37.44007 -35.96566 -33.97743 -32.54679 -30.95336 -29.46327 -29.11641 -27.14635 -25.03280 -24.30000 -22.96203 -22.21426 -21.03921 -20.30724 -19.48134 -18.43348 -17.51191 -17.39461 -17.10542 -16.23850 -15.72335 -15.43730 -15.32744 -14.61997 -14.17949 -13.92964 -13.77786 -13.71108 -13.07849 -12.87810 -12.68913 -12.64708 -12.16802 -11.99561 -11.94990 -11.85110 -11.55550 -11.15507 -11.14326 -11.11288 -10.74235 -10.67288 -10.46967 -9.91486 -9.53297 -9.45814 -9.23462 -8.84015 -8.33258 -7.56976 -7.46438 -6.88803 -4.47957 0.13156 0.94857 1.58822 1.75055 1.85517 2.47724 2.56768 2.61841 2.80103 3.00051 3.02165 3.03390 3.18007 3.84252 4.19845 4.52110 4.67150 4.84252 5.03481 5.17985 5.34447 5.57108 5.58724 5.74088 5.75490 5.86041 5.89718 6.00163 6.28821 6.33202 6.34353 6.87569 6.95853 7.18019 7.25247 7.51132 7.56039 7.73333 7.78975 7.95068 8.00250 8.19033 8.52742 8.77172 8.85773 10.04814 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.003094 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.712614 B = 9048.198735 C =10238.193304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.455 4.455 8 H 0.080 0.920 9 C 0.120 3.880 10 C -0.172 4.172 11 C -0.070 4.070 12 C -0.261 4.261 13 C 0.212 3.788 14 N -0.430 5.430 15 N -0.243 5.243 16 C 0.291 3.709 17 C -0.143 4.143 18 C -0.083 4.083 19 C -0.140 4.140 20 C -0.208 4.208 21 S 0.211 5.789 22 O -0.271 6.271 23 C 0.602 3.398 24 O -0.486 6.486 25 C -0.061 4.061 26 C -0.231 4.231 27 H 0.283 0.717 28 H 0.119 0.881 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.173 0.827 35 H 0.092 0.908 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.645 -9.825 -15.989 19.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.484 4.484 8 H 0.098 0.902 9 C 0.118 3.882 10 C -0.192 4.192 11 C -0.089 4.089 12 C -0.264 4.264 13 C 0.097 3.903 14 N -0.261 5.261 15 N -0.073 5.073 16 C 0.067 3.933 17 C -0.262 4.262 18 C -0.118 4.118 19 C -0.170 4.170 20 C -0.345 4.345 21 S 0.476 5.524 22 O -0.168 6.168 23 C 0.354 3.646 24 O -0.367 6.367 25 C -0.080 4.080 26 C -0.251 4.251 27 H 0.094 0.906 28 H 0.137 0.863 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.169 0.831 33 H 0.167 0.833 34 H 0.191 0.809 35 H 0.110 0.890 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.310 -8.488 -14.879 17.934 hybrid contribution 2.174 -0.557 -0.241 2.257 sum -3.136 -9.045 -15.121 17.896 Atomic orbital electron populations 1.69815 1.07674 1.29647 1.33724 1.25971 0.94776 1.01532 0.92060 0.86323 0.80185 0.79893 0.80144 1.18689 1.20169 1.18854 1.19670 0.98249 0.91304 1.39192 0.90218 1.17700 0.90760 0.92036 0.87751 1.21291 0.99548 0.96777 1.01565 1.20525 0.98046 0.92455 0.97920 1.19075 1.03420 0.92535 1.11334 1.20458 0.96559 0.94833 0.78456 1.51034 1.29899 1.41059 1.04098 1.77524 1.20859 1.19380 0.89557 1.22190 0.87712 0.91642 0.91787 1.21203 1.06602 1.09773 0.88634 1.20482 0.99692 0.99479 0.92187 1.20023 0.99431 1.01254 0.96308 1.26139 1.02090 1.03760 1.02540 1.84623 1.29936 1.43581 0.94283 1.85118 1.51795 1.60312 1.19588 1.19400 0.82612 0.81678 0.80899 1.91177 1.53583 1.56823 1.35145 1.20486 0.94253 0.96829 0.96430 1.20974 1.03982 0.92781 1.07358 0.90557 0.86311 0.89198 0.88816 0.88955 0.83057 0.83325 0.80912 0.88960 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.77 10.95 55.55 0.61 -19.17 16 2 C 0.08 1.87 5.14 -17.34 -0.09 1.78 16 3 Si 0.91 18.29 29.60 -169.99 -5.03 13.26 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.46 -11.97 9.05 -37.74 -0.34 -12.31 16 8 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 9 C 0.12 3.21 5.58 -106.82 -0.60 2.61 16 10 C -0.17 -4.43 8.70 -38.87 -0.34 -4.77 16 11 C -0.07 -1.62 9.67 -39.66 -0.38 -2.01 16 12 C -0.26 -5.69 5.49 -104.33 -0.57 -6.26 16 13 C 0.21 3.81 6.52 -5.19 -0.03 3.77 16 14 N -0.43 -7.91 3.62 -66.45 -0.24 -8.15 16 15 N -0.24 -4.13 12.59 31.84 0.40 -3.73 16 16 C 0.29 4.46 8.11 -14.52 -0.12 4.35 16 17 C -0.14 -1.69 6.43 -37.07 -0.24 -1.93 16 18 C -0.08 -0.78 10.08 -40.86 -0.41 -1.19 16 19 C -0.14 -1.00 10.16 -41.33 -0.42 -1.42 16 20 C -0.21 -1.42 11.23 29.14 0.33 -1.09 16 21 S 0.21 2.01 23.30 -107.50 -2.50 -0.50 16 22 O -0.27 -4.62 10.70 -20.96 -0.22 -4.84 16 23 C 0.60 11.62 9.24 54.14 0.50 12.12 16 24 O -0.49 -10.42 17.92 -19.01 -0.34 -10.76 16 25 C -0.06 -1.41 9.67 -39.66 -0.38 -1.80 16 26 C -0.23 -5.79 9.80 -38.87 -0.38 -6.17 16 27 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 28 H 0.12 3.14 6.15 -52.49 -0.32 2.81 16 29 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 30 H 0.09 1.56 8.06 -51.93 -0.42 1.14 16 31 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 32 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.15 0.68 8.06 -52.48 -0.42 0.25 16 34 H 0.17 0.68 8.06 -52.48 -0.42 0.26 16 35 H 0.09 2.02 8.06 -52.48 -0.42 1.59 16 36 H 0.09 2.24 8.06 -52.48 -0.42 1.81 16 LS Contribution 341.68 15.07 5.15 5.15 Total: -1.00 -29.86 341.68 -8.91 -38.77 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -3.25 Total: 4.29 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -3.48 Total: -14.33 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.77 Total: -31.04 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.56 Total: -15.60 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.50 Total: -0.50 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.86 -8.91 -38.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505684893.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.501 kcal (2) G-P(sol) polarization free energy of solvation -29.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds