Wall clock time and date at job start Tue Mar 31 2020 14:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86800 * 120.00391 * 2 1 4 4 H 1.48492 * 109.47384 * 239.99733 * 3 2 1 5 5 H 1.48500 * 109.46729 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46863 * 119.99667 * 3 2 1 7 7 C 1.39950 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00494 * 197.86002 * 7 2 1 9 9 C 1.41400 * 119.99539 * 17.85436 * 7 2 1 10 10 C 1.40720 * 120.24537 * 24.39535 * 9 7 2 11 11 C 1.37615 * 119.74367 * 180.02562 * 10 9 7 12 12 C 1.38636 * 120.25185 * 0.27407 * 11 10 9 13 13 C 1.50699 * 119.75289 * 179.70401 * 12 11 10 14 14 N 1.46506 * 109.47016 * 89.99742 * 13 12 11 15 15 N 1.40272 * 126.56135 * 270.02514 * 14 13 12 16 16 C 1.30428 * 107.71872 * 179.97438 * 15 14 13 17 17 C 1.47179 * 125.49060 * 179.97438 * 16 15 14 18 18 C 1.35088 * 125.27880 * 179.97438 * 17 16 15 19 19 C 1.37806 * 114.67179 * 179.97438 * 18 17 16 20 20 C 1.33704 * 115.09764 * 359.97438 * 19 18 17 21 21 S 1.75860 * 109.78353 * 359.75790 * 20 19 18 22 22 O 1.35138 * 109.01504 * 0.02562 * 16 15 14 23 23 C 1.34347 * 108.86349 * 359.76687 * 22 16 15 24 24 O 1.21704 * 126.23496 * 180.26441 * 23 22 16 25 25 C 1.38637 * 120.49605 * 359.44024 * 12 11 10 26 26 C 1.37614 * 120.25085 * 0.55928 * 25 12 11 27 27 H 0.97001 * 119.99459 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.12205 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.87216 * 179.97438 * 11 10 9 30 30 H 1.08995 * 109.47407 * 209.99698 * 13 12 11 31 31 H 1.09000 * 109.46523 * 329.99904 * 13 12 11 32 32 H 1.07995 * 122.65933 * 359.97438 * 18 17 16 33 33 H 1.08003 * 122.45090 * 179.97438 * 19 18 17 34 34 H 1.08004 * 125.10836 * 179.97438 * 20 19 18 35 35 H 1.08007 * 119.87424 * 180.26009 * 25 12 11 36 36 H 1.08003 * 120.13103 * 179.74367 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6963 1.2126 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2347 0.2863 9 6 1.3520 -2.4069 -0.3765 10 6 0.2208 -2.3616 -1.2123 11 6 -0.4100 -3.5308 -1.5714 12 6 0.0615 -4.7495 -1.1084 13 6 -0.6419 -6.0224 -1.5032 14 7 -0.0546 -6.5411 -2.7412 15 7 -0.4613 -6.2397 -4.0493 16 6 0.3112 -6.8996 -4.8672 17 6 0.2254 -6.8683 -6.3362 18 6 1.0283 -7.5533 -7.1794 19 6 0.7538 -7.3635 -8.5164 20 6 -0.2622 -6.5336 -8.7746 21 16 -0.9440 -5.9401 -7.2661 22 8 1.2023 -7.6175 -4.1484 23 6 0.9845 -7.3967 -2.8412 24 8 1.6093 -7.8812 -1.9159 25 6 1.1786 -4.8064 -0.2893 26 6 1.8252 -3.6500 0.0826 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1513 -1.4129 -1.5699 29 1 -1.2786 -3.4984 -2.2125 30 1 -0.5286 -6.7612 -0.7100 31 1 -1.7009 -5.8182 -1.6612 32 1 1.8222 -8.1983 -6.8331 33 1 1.3181 -7.8496 -9.2985 34 1 -0.6139 -6.2703 -9.7612 35 1 1.5398 -5.7616 0.0623 36 1 2.6928 -3.6963 0.7242 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000505684893.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:57 Heat of formation + Delta-G solvation = 34.339747 kcal Electronic energy + Delta-G solvation = -23840.811191 eV Core-core repulsion = 20190.126663 eV Total energy + Delta-G solvation = -3650.684528 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.49235 -39.79097 -39.25604 -38.62718 -37.43265 -35.75827 -33.91666 -32.38561 -31.28473 -30.46441 -28.67173 -26.30688 -25.62004 -24.29490 -23.48292 -22.91503 -21.96953 -20.43699 -19.33817 -19.29619 -18.91565 -18.41047 -17.57651 -17.20569 -16.86032 -16.49179 -16.23562 -15.73267 -15.51089 -14.99469 -14.91969 -14.50090 -13.94809 -13.89090 -13.72871 -13.67447 -13.51104 -13.41367 -13.18965 -13.16003 -12.85730 -12.77468 -12.47594 -12.22049 -12.08980 -11.77216 -11.64172 -11.36029 -11.07794 -10.64965 -9.55716 -9.50121 -9.45375 -9.35849 -8.72496 -6.43939 -0.71381 0.05281 0.44248 0.79518 0.93837 0.99869 1.03189 1.08574 1.35825 1.45807 1.48841 1.60509 1.80574 2.16764 2.64744 2.98050 3.58213 3.65984 4.07471 4.12637 4.15732 4.23523 4.36532 4.40431 4.49741 4.53970 4.61604 4.88534 4.95511 5.04649 5.07730 5.21255 5.27331 5.35819 5.38218 5.60908 5.83917 6.00893 6.07143 6.18630 6.28880 6.36902 6.60154 6.84317 6.92634 8.24051 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.003094 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.712614 B = 9048.198735 C =10238.193304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.037 3.963 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.496 4.496 8 H 0.076 0.924 9 C 0.091 3.909 10 C -0.194 4.194 11 C -0.070 4.070 12 C -0.249 4.249 13 C 0.216 3.784 14 N -0.434 5.434 15 N -0.270 5.270 16 C 0.310 3.690 17 C -0.194 4.194 18 C -0.061 4.061 19 C -0.148 4.148 20 C -0.173 4.173 21 S 0.190 5.810 22 O -0.270 6.270 23 C 0.597 3.403 24 O -0.516 6.516 25 C -0.066 4.066 26 C -0.252 4.252 27 H 0.292 0.708 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.159 0.841 33 H 0.184 0.816 34 H 0.210 0.790 35 H 0.105 0.895 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.015 -10.311 -18.934 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.184 1.184 7 C -0.525 4.525 8 H 0.094 0.906 9 C 0.088 3.912 10 C -0.214 4.214 11 C -0.088 4.088 12 C -0.251 4.251 13 C 0.100 3.900 14 N -0.264 5.264 15 N -0.099 5.099 16 C 0.087 3.913 17 C -0.313 4.313 18 C -0.098 4.098 19 C -0.176 4.176 20 C -0.310 4.310 21 S 0.455 5.545 22 O -0.167 6.167 23 C 0.349 3.651 24 O -0.400 6.400 25 C -0.085 4.085 26 C -0.271 4.271 27 H 0.103 0.897 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.137 0.863 32 H 0.177 0.823 33 H 0.201 0.799 34 H 0.227 0.773 35 H 0.123 0.877 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.704 -8.977 -17.840 20.770 hybrid contribution 2.247 -0.607 0.379 2.358 sum -3.457 -9.584 -17.461 20.216 Atomic orbital electron populations 1.69850 1.08997 1.31041 1.33981 1.26800 0.95560 1.04569 0.90984 0.85222 0.78860 0.75407 0.80083 1.18556 1.18659 1.18352 1.19896 0.98448 0.92612 1.41497 0.90629 1.18022 0.91670 0.92867 0.88654 1.21280 1.00277 0.97233 1.02569 1.20758 0.98322 0.92092 0.97665 1.19440 1.02368 0.93947 1.09378 1.20474 0.97312 0.93237 0.78967 1.50749 1.29783 1.40953 1.04936 1.77571 1.22240 1.21385 0.88719 1.22976 0.85780 0.89448 0.93069 1.21346 1.09636 1.13341 0.86957 1.20853 0.98345 0.97518 0.93094 1.20347 0.99895 1.01569 0.95826 1.26643 1.00415 1.01396 1.02595 1.84730 1.30038 1.43872 0.95878 1.85100 1.52197 1.60524 1.18904 1.19447 0.82593 0.81775 0.81261 1.91142 1.54558 1.57994 1.36277 1.20696 0.94571 0.96677 0.96549 1.21140 1.04645 0.93241 1.08102 0.89702 0.87676 0.87069 0.87367 0.86337 0.82331 0.79926 0.77282 0.87738 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.05 10.95 21.83 0.24 -41.81 16 2 C 0.04 1.88 5.14 85.26 0.44 2.32 16 3 Si 0.98 37.92 29.60 68.60 2.03 39.95 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 6 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 7 C -0.50 -27.20 9.05 23.46 0.21 -26.99 16 8 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 9 C 0.09 5.03 5.58 -21.29 -0.12 4.91 16 10 C -0.19 -10.32 8.70 22.73 0.20 -10.13 16 11 C -0.07 -3.23 9.67 22.22 0.21 -3.01 16 12 C -0.25 -10.83 5.49 -19.67 -0.11 -10.94 16 13 C 0.22 7.52 6.52 85.63 0.56 8.08 16 14 N -0.43 -15.75 3.62 -594.41 -2.15 -17.90 16 15 N -0.27 -9.02 12.59 -167.24 -2.11 -11.13 16 16 C 0.31 9.33 8.11 87.25 0.71 10.04 16 17 C -0.19 -4.31 6.43 23.89 0.15 -4.15 16 18 C -0.06 -0.99 10.08 21.44 0.22 -0.77 16 19 C -0.15 -1.47 10.16 21.14 0.21 -1.26 16 20 C -0.17 -1.62 11.23 66.79 0.75 -0.87 16 21 S 0.19 3.24 23.30 -56.49 -1.32 1.92 16 22 O -0.27 -9.12 10.70 11.81 0.13 -8.99 16 23 C 0.60 23.02 9.24 129.76 1.20 24.21 16 24 O -0.52 -22.26 17.92 18.78 0.34 -21.93 16 25 C -0.07 -3.11 9.67 22.22 0.21 -2.90 16 26 C -0.25 -13.10 9.80 22.73 0.22 -12.87 16 27 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 28 H 0.11 5.79 6.15 -2.91 -0.02 5.77 16 29 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 30 H 0.11 3.46 8.06 -2.39 -0.02 3.44 16 31 H 0.12 3.50 8.08 -2.39 -0.02 3.48 16 32 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 33 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 34 H 0.21 0.44 8.06 -2.91 -0.02 0.42 16 35 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 36 H 0.09 4.73 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -67.87 341.68 3.36 -64.51 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 1.13 Total: 19.70 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: 5.07 Total: -24.32 kcal Atomic # 7 Polarization: -66.82 SS G_CDS: -4.02 Total: -70.84 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: 0.46 Total: -30.92 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.32 Total: 1.92 kcal Total: -67.87 3.36 -64.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505684893.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.851 kcal (2) G-P(sol) polarization free energy of solvation -67.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds