Wall clock time and date at job start Tue Mar 31 2020 15:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42097 * 110.54433 * 2 1 4 4 O 1.42100 * 110.53867 * 223.25412 * 2 1 3 5 5 C 1.76201 * 104.45066 * 111.63211 * 2 1 3 6 6 C 1.33386 * 125.20536 * 89.99723 * 5 2 1 7 7 C 1.38421 * 114.92201 * 179.79407 * 6 5 2 8 8 C 1.33391 * 114.92075 * 0.42595 * 7 6 5 9 9 C 1.50695 * 125.20561 * 179.86287 * 8 7 6 10 10 N 1.46901 * 109.47379 * 89.71974 * 9 8 7 11 11 C 1.46895 * 111.00119 * 180.02562 * 10 9 8 12 12 C 1.52994 * 109.47270 * 179.97438 * 11 10 9 13 13 H 1.09009 * 109.47154 * 54.99975 * 12 11 10 14 14 C 1.47200 * 109.47451 * 295.00037 * 12 11 10 15 15 N 8.99107 * 131.02510 * 115.93417 * 2 1 3 16 16 C 1.52996 * 109.47347 * 174.99819 * 12 11 10 17 17 C 1.50702 * 109.47159 * 185.00014 * 16 12 11 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 12 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48504 * 109.47196 * 60.00645 * 21 19 17 23 23 H 1.48504 * 109.46887 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47679 * 300.00280 * 21 19 17 25 25 S 1.75882 * 125.20029 * 270.01990 * 5 2 1 26 26 H 1.09003 * 109.47055 * 308.37170 * 1 2 3 27 27 H 1.09000 * 109.47277 * 68.36833 * 1 2 3 28 28 H 1.08997 * 109.47498 * 188.37505 * 1 2 3 29 29 H 1.08008 * 122.53803 * 0.02562 * 6 5 2 30 30 H 1.08003 * 122.54254 * 180.27413 * 7 6 5 31 31 H 1.09002 * 109.47190 * 329.71778 * 9 8 7 32 32 H 1.08996 * 109.47247 * 209.71969 * 9 8 7 33 33 H 1.00903 * 110.99388 * 56.04541 * 10 9 8 34 34 H 1.08998 * 109.47324 * 59.99878 * 11 10 9 35 35 H 1.09002 * 109.47421 * 300.00055 * 11 10 9 36 36 H 1.09004 * 109.47066 * 65.00217 * 16 12 11 37 37 H 1.08994 * 109.47405 * 305.00047 * 16 12 11 38 38 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3125 -0.9692 -0.9118 5 6 2.2537 -0.6290 1.5861 6 6 2.4455 -1.9167 1.8765 7 6 2.7898 -2.1727 3.1926 8 6 2.8688 -1.0939 3.9730 9 6 3.2212 -1.1054 5.4381 10 7 4.6768 -0.9816 5.5927 11 6 5.0581 -0.9898 7.0113 12 6 6.5778 -0.8600 7.1316 13 1 6.9099 0.0303 6.5974 14 6 7.2196 -2.0497 6.5490 15 7 7.7156 -2.9665 6.1000 16 6 6.9644 -0.7432 8.6073 17 6 8.4462 -0.4924 8.7201 18 1 9.0515 -0.4229 7.8284 19 6 9.0280 -0.3455 9.9615 20 7 8.2908 -0.4298 11.0473 21 14 10.8633 -0.0271 10.1009 22 1 11.2019 1.2346 9.3945 23 1 11.2378 0.0911 11.5331 24 1 11.6096 -1.1542 9.4860 25 16 2.5062 0.3450 3.0287 26 1 -0.3633 0.6380 0.8057 27 1 -0.3634 0.3788 -0.9553 28 1 -0.3634 -1.0166 0.1497 29 1 2.3438 -2.6998 1.1397 30 1 2.9777 -3.1707 3.5603 31 1 2.8867 -2.0416 5.8850 32 1 2.7305 -0.2693 5.9364 33 1 5.0203 -0.1531 5.1303 34 1 4.7364 -1.9255 7.4686 35 1 4.5802 -0.1532 7.5209 36 1 6.7124 -1.6696 9.1234 37 1 6.4203 0.0851 9.0610 38 1 8.7002 -0.3268 11.9207 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516037232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:57 Heat of formation + Delta-G solvation = -16.194783 kcal Electronic energy + Delta-G solvation = -21787.077377 eV Core-core repulsion = 18269.645459 eV Total energy + Delta-G solvation = -3517.431918 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.59562 -37.48030 -37.25730 -36.32922 -35.35296 -33.65532 -32.09452 -30.37269 -29.90559 -27.19510 -25.49733 -23.34812 -22.56490 -21.78253 -20.70041 -19.06192 -18.23973 -17.12182 -16.64567 -16.52921 -16.45823 -15.89068 -15.15639 -15.09646 -14.89958 -14.46302 -14.06881 -13.79137 -13.71489 -13.32462 -13.15774 -12.93238 -12.66685 -12.52510 -12.40201 -12.36430 -12.20682 -12.02790 -11.77816 -11.61475 -11.36410 -11.27129 -11.11263 -11.07752 -10.73884 -10.59242 -10.29901 -9.68314 -9.44478 -9.26941 -8.86630 -8.54820 -8.47462 -6.13175 -4.16489 -0.40130 0.18385 1.08505 1.43813 2.16603 2.46949 3.29525 3.33725 3.37724 3.46377 3.69386 3.78643 3.79387 4.08575 4.27100 4.37575 4.41805 4.50540 4.80987 4.85343 5.03490 5.08754 5.11915 5.25075 5.28309 5.45660 5.51739 5.62271 5.79868 5.89557 6.00445 6.26453 6.40805 6.82494 7.22262 7.36549 7.46954 7.81806 8.18705 8.54007 8.87902 9.49256 10.97626 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.027032 B = 0.002089 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.541946 B =13402.103273 C =13467.105963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 2.527 3.473 3 O -0.933 6.933 4 O -0.932 6.932 5 C -0.786 4.786 6 C 0.010 3.990 7 C -0.150 4.150 8 C -0.127 4.127 9 C 0.121 3.879 10 N -0.688 5.688 11 C 0.066 3.934 12 C 0.010 3.990 13 H 0.100 0.900 14 C 0.253 3.747 15 N -0.476 5.476 16 C 0.032 3.968 17 C -0.528 4.528 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.892 5.892 21 Si 0.893 3.107 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.276 1.276 25 S 0.209 5.791 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.345 0.655 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.027 0.973 37 H 0.038 0.962 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.544 2.203 -17.905 28.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.799 4.799 2 S 2.703 3.297 3 O -0.930 6.930 4 O -0.929 6.929 5 C -0.987 4.987 6 C -0.026 4.026 7 C -0.181 4.181 8 C -0.247 4.247 9 C -0.010 4.010 10 N -0.320 5.320 11 C -0.063 4.063 12 C -0.012 4.012 13 H 0.118 0.882 14 C -0.064 4.064 15 N -0.153 5.153 16 C -0.006 4.006 17 C -0.566 4.566 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.530 5.530 21 Si 0.720 3.280 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.202 1.202 25 S 0.476 5.524 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.172 0.828 30 H 0.169 0.831 31 H 0.116 0.884 32 H 0.067 0.933 33 H 0.163 0.837 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.175 1.997 -18.753 28.356 hybrid contribution 0.244 -0.456 1.056 1.175 sum -20.931 1.541 -17.698 27.453 Atomic orbital electron populations 1.30229 1.25510 1.12225 1.11948 1.04546 0.77749 0.74459 0.72959 1.93609 1.77409 1.36253 1.85733 1.93595 1.77491 1.61901 1.59956 1.35390 1.29837 1.07488 1.25980 1.20021 0.91413 0.94398 0.96733 1.20358 1.04364 1.00563 0.92853 1.25156 1.02507 0.96581 1.00442 1.20532 0.89748 1.02939 0.87789 1.60559 1.09799 1.46592 1.15072 1.22125 0.95019 1.02344 0.86839 1.19211 0.91020 0.90106 1.00908 0.88220 1.28782 0.92178 0.94034 0.91394 1.80949 1.10443 1.12238 1.11621 1.19163 0.97277 0.98662 0.85517 1.21097 0.92941 1.50022 0.92537 0.92522 1.24953 0.98220 0.94975 0.95810 1.69926 1.35739 1.49575 0.97797 0.86638 0.85351 0.78993 0.77007 1.20024 1.21181 1.20197 1.84212 1.65339 1.06845 0.95994 0.84866 0.84861 0.84826 0.82781 0.83114 0.88385 0.93288 0.83673 0.90096 0.92842 0.95508 0.94416 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.88 10.80 101.05 1.09 -0.79 16 2 S 2.53 19.26 5.94 -107.50 -0.64 18.62 16 3 O -0.93 -10.33 17.77 -57.54 -1.02 -11.36 16 4 O -0.93 -10.01 17.64 -57.54 -1.01 -11.03 16 5 C -0.79 -6.86 6.23 29.04 0.18 -6.68 16 6 C 0.01 0.08 9.78 -41.21 -0.40 -0.32 16 7 C -0.15 -1.39 10.05 -41.21 -0.41 -1.81 16 8 C -0.13 -1.20 6.02 -36.00 -0.22 -1.42 16 9 C 0.12 1.13 6.18 -4.98 -0.03 1.10 16 10 N -0.69 -8.21 6.19 -115.07 -0.71 -8.92 16 11 C 0.07 0.88 5.05 -3.83 -0.02 0.87 16 12 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 13 H 0.10 1.63 8.14 -51.92 -0.42 1.20 16 14 C 0.25 5.19 13.67 -20.79 -0.28 4.91 16 15 N -0.48 -10.73 18.53 42.11 0.78 -9.95 16 16 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 17 C -0.53 -13.86 8.60 -34.44 -0.30 -14.16 16 18 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -25.20 13.29 55.43 0.74 -24.47 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 S 0.21 1.91 23.13 -107.50 -2.49 -0.58 16 26 H 0.13 0.22 8.14 -51.92 -0.42 -0.20 16 27 H 0.13 0.19 8.14 -51.92 -0.42 -0.24 16 28 H 0.13 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.15 1.01 8.01 -52.48 -0.42 0.59 16 30 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.34 3.89 8.72 -39.29 -0.34 3.55 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -35.72 364.05 -9.67 -45.39 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -4.95 Total: -3.23 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -0.83 Total: -16.14 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.80 Total: -43.33 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -2.04 Total: -22.38 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 21.17 SS G_CDS: -3.12 Total: 18.04 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.72 -9.67 -45.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516037232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.198 kcal (2) G-P(sol) polarization free energy of solvation -35.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds