Wall clock time and date at job start Tue Mar 31 2020 15:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42097 * 110.54433 * 2 1 4 4 O 1.42100 * 110.53867 * 223.25412 * 2 1 3 5 5 C 1.76201 * 104.45066 * 111.63211 * 2 1 3 6 6 C 1.33386 * 125.20536 * 89.99723 * 5 2 1 7 7 C 1.38421 * 114.92201 * 179.79407 * 6 5 2 8 8 C 1.33391 * 114.92075 * 0.42595 * 7 6 5 9 9 C 1.50695 * 125.20561 * 179.86287 * 8 7 6 10 10 N 1.46901 * 109.47379 * 89.71974 * 9 8 7 11 11 C 1.46895 * 111.00119 * 180.02562 * 10 9 8 12 12 C 1.52994 * 109.47270 * 179.97438 * 11 10 9 13 13 H 1.09009 * 109.47154 * 54.99975 * 12 11 10 14 14 C 1.47200 * 109.47451 * 295.00037 * 12 11 10 15 15 N 8.99107 * 131.02510 * 115.93417 * 2 1 3 16 16 C 1.52996 * 109.47347 * 174.99819 * 12 11 10 17 17 C 1.50702 * 109.47159 * 185.00014 * 16 12 11 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 12 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48504 * 109.47196 * 60.00645 * 21 19 17 23 23 H 1.48504 * 109.46887 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47679 * 300.00280 * 21 19 17 25 25 S 1.75882 * 125.20029 * 270.01990 * 5 2 1 26 26 H 1.09003 * 109.47055 * 308.37170 * 1 2 3 27 27 H 1.09000 * 109.47277 * 68.36833 * 1 2 3 28 28 H 1.08997 * 109.47498 * 188.37505 * 1 2 3 29 29 H 1.08008 * 122.53803 * 0.02562 * 6 5 2 30 30 H 1.08003 * 122.54254 * 180.27413 * 7 6 5 31 31 H 1.09002 * 109.47190 * 329.71778 * 9 8 7 32 32 H 1.08996 * 109.47247 * 209.71969 * 9 8 7 33 33 H 1.00903 * 110.99388 * 56.04541 * 10 9 8 34 34 H 1.08998 * 109.47324 * 59.99878 * 11 10 9 35 35 H 1.09002 * 109.47421 * 300.00055 * 11 10 9 36 36 H 1.09004 * 109.47066 * 65.00217 * 16 12 11 37 37 H 1.08994 * 109.47405 * 305.00047 * 16 12 11 38 38 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3125 -0.9692 -0.9118 5 6 2.2537 -0.6290 1.5861 6 6 2.4455 -1.9167 1.8765 7 6 2.7898 -2.1727 3.1926 8 6 2.8688 -1.0939 3.9730 9 6 3.2212 -1.1054 5.4381 10 7 4.6768 -0.9816 5.5927 11 6 5.0581 -0.9898 7.0113 12 6 6.5778 -0.8600 7.1316 13 1 6.9099 0.0303 6.5974 14 6 7.2196 -2.0497 6.5490 15 7 7.7156 -2.9665 6.1000 16 6 6.9644 -0.7432 8.6073 17 6 8.4462 -0.4924 8.7201 18 1 9.0515 -0.4229 7.8284 19 6 9.0280 -0.3455 9.9615 20 7 8.2908 -0.4298 11.0473 21 14 10.8633 -0.0271 10.1009 22 1 11.2019 1.2346 9.3945 23 1 11.2378 0.0911 11.5331 24 1 11.6096 -1.1542 9.4860 25 16 2.5062 0.3450 3.0287 26 1 -0.3633 0.6380 0.8057 27 1 -0.3634 0.3788 -0.9553 28 1 -0.3634 -1.0166 0.1497 29 1 2.3438 -2.6998 1.1397 30 1 2.9777 -3.1707 3.5603 31 1 2.8867 -2.0416 5.8850 32 1 2.7305 -0.2693 5.9364 33 1 5.0203 -0.1531 5.1303 34 1 4.7364 -1.9255 7.4686 35 1 4.5802 -0.1532 7.5209 36 1 6.7124 -1.6696 9.1234 37 1 6.4203 0.0851 9.0610 38 1 8.7002 -0.3268 11.9207 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516037232.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:56 Heat of formation + Delta-G solvation = -42.533305 kcal Electronic energy + Delta-G solvation = -21788.219501 eV Core-core repulsion = 18269.645459 eV Total energy + Delta-G solvation = -3518.574042 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.36859 -38.60521 -38.08809 -37.02814 -36.63307 -35.43144 -33.63731 -31.33723 -30.29091 -28.55285 -26.65041 -24.43856 -23.54221 -23.46136 -21.35436 -19.73074 -19.01005 -18.48279 -18.29734 -17.29720 -17.18000 -16.66917 -16.54202 -16.02788 -15.90869 -15.74043 -15.20361 -14.68770 -14.30465 -14.15260 -13.99828 -13.90092 -13.77208 -13.76130 -13.54508 -13.27809 -13.20973 -13.12262 -13.01581 -13.00623 -12.74857 -12.48032 -12.38852 -12.27993 -11.94597 -11.88545 -11.77639 -11.42587 -11.18319 -10.55292 -10.16255 -9.56564 -9.40746 -8.20241 -6.27931 -0.91975 -0.50086 0.41611 0.75970 1.40451 1.42219 1.48481 1.49326 1.89596 2.07231 2.13900 2.41000 2.95395 3.14880 3.18381 3.29844 3.34885 3.68457 4.09580 4.10473 4.19531 4.20164 4.37956 4.41396 4.51020 4.64238 4.75337 4.82642 4.84893 4.95102 4.99541 5.11926 5.34207 5.46694 5.62060 5.78138 5.88450 6.20381 6.33628 6.82795 6.93018 7.40495 8.90260 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.027032 B = 0.002089 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.541946 B =13402.103273 C =13467.105963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.619 4.619 2 S 2.523 3.477 3 O -0.977 6.977 4 O -0.972 6.972 5 C -0.788 4.788 6 C 0.002 3.998 7 C -0.158 4.158 8 C -0.136 4.136 9 C 0.123 3.877 10 N -0.700 5.700 11 C 0.080 3.920 12 C 0.019 3.981 13 H 0.118 0.882 14 C 0.265 3.735 15 N -0.515 5.515 16 C 0.039 3.961 17 C -0.541 4.541 18 H 0.052 0.948 19 C 0.012 3.988 20 N -0.922 5.922 21 Si 0.946 3.054 22 H -0.264 1.264 23 H -0.282 1.282 24 H -0.283 1.283 25 S 0.202 5.798 26 H 0.153 0.847 27 H 0.157 0.843 28 H 0.158 0.842 29 H 0.171 0.829 30 H 0.157 0.843 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.348 0.652 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.003 0.997 37 H 0.038 0.962 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.342 2.749 -18.607 30.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.774 4.774 2 S 2.704 3.296 3 O -0.974 6.974 4 O -0.970 6.970 5 C -0.988 4.988 6 C -0.032 4.032 7 C -0.189 4.189 8 C -0.256 4.256 9 C -0.007 4.007 10 N -0.333 5.333 11 C -0.050 4.050 12 C -0.003 4.003 13 H 0.135 0.865 14 C -0.052 4.052 15 N -0.193 5.193 16 C 0.000 4.000 17 C -0.579 4.579 18 H 0.070 0.930 19 C -0.187 4.187 20 N -0.562 5.562 21 Si 0.772 3.228 22 H -0.188 1.188 23 H -0.207 1.207 24 H -0.208 1.208 25 S 0.469 5.531 26 H 0.172 0.828 27 H 0.175 0.825 28 H 0.176 0.824 29 H 0.188 0.812 30 H 0.175 0.825 31 H 0.123 0.877 32 H 0.085 0.915 33 H 0.167 0.833 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.021 0.979 37 H 0.057 0.943 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.930 2.549 -19.460 30.183 hybrid contribution 0.708 -0.638 1.223 1.551 sum -22.222 1.911 -18.237 28.811 Atomic orbital electron populations 1.30019 1.18480 1.14642 1.14230 1.04500 0.80296 0.72863 0.71963 1.93553 1.80027 1.37793 1.86015 1.93543 1.80034 1.62458 1.60918 1.35544 1.29775 1.07469 1.26050 1.20248 0.91210 0.94877 0.96912 1.20564 1.04213 1.00915 0.93225 1.25190 1.03085 0.96720 1.00561 1.20569 0.88109 1.04053 0.88015 1.60469 1.11806 1.47077 1.13946 1.21912 0.91688 1.03226 0.88201 1.19203 0.93928 0.89577 0.97629 0.86479 1.29359 0.91241 0.94003 0.90563 1.80947 1.11836 1.13595 1.12917 1.18984 0.95297 0.97270 0.88475 1.21534 0.95018 1.49051 0.92272 0.92973 1.25684 1.01932 0.95222 0.95845 1.70013 1.37184 1.50832 0.98129 0.85786 0.80948 0.78913 0.77148 1.18833 1.20683 1.20843 1.84201 1.65596 1.06982 0.96328 0.82825 0.82494 0.82363 0.81194 0.82549 0.87729 0.91495 0.83284 0.90293 0.90653 0.97876 0.94333 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -1.39 10.80 113.37 1.22 -0.16 16 2 S 2.52 36.19 5.94 -56.49 -0.34 35.85 16 3 O -0.98 -21.64 17.77 -127.65 -2.27 -23.90 16 4 O -0.97 -20.69 17.64 -127.65 -2.25 -22.94 16 5 C -0.79 -12.95 6.23 66.72 0.42 -12.54 16 6 C 0.00 0.04 9.78 21.21 0.21 0.24 16 7 C -0.16 -2.73 10.05 21.22 0.21 -2.52 16 8 C -0.14 -2.38 6.02 24.59 0.15 -2.23 16 9 C 0.12 2.05 6.18 85.56 0.53 2.58 16 10 N -0.70 -15.46 6.19 -517.96 -3.21 -18.66 16 11 C 0.08 1.98 5.05 86.30 0.44 2.41 16 12 C 0.02 0.63 2.35 -12.60 -0.03 0.60 16 13 H 0.12 3.62 8.14 -2.38 -0.02 3.60 16 14 C 0.26 10.72 13.67 89.45 1.22 11.94 16 15 N -0.52 -23.23 18.53 19.99 0.37 -22.86 16 16 C 0.04 1.71 4.42 29.85 0.13 1.85 16 17 C -0.54 -28.27 8.60 25.60 0.22 -28.05 16 18 H 0.05 2.72 7.59 -2.91 -0.02 2.69 16 19 C 0.01 0.67 5.46 84.66 0.46 1.13 16 20 N -0.92 -52.22 13.29 21.45 0.28 -51.93 16 21 Si 0.95 43.27 29.54 68.60 2.03 45.30 16 22 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 25 S 0.20 3.46 23.13 -56.49 -1.31 2.16 16 26 H 0.15 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.16 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H 0.16 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.17 2.04 8.01 -2.91 -0.02 2.01 16 30 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.35 7.25 8.72 -89.69 -0.78 6.47 16 34 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 Total: -1.00 -77.73 364.05 -1.20 -78.93 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: 0.30 Total: 2.82 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 5.18 Total: -24.75 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -2.55 Total: -93.46 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -4.52 Total: -46.84 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 39.65 SS G_CDS: -1.64 Total: 38.01 kcal Total: -77.73 -1.20 -78.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516037232.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.398 kcal (2) G-P(sol) polarization free energy of solvation -77.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds