Wall clock time and date at job start Tue Mar 31 2020 15:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86799 * 119.99777 * 2 1 4 4 H 1.48504 * 109.47171 * 240.00497 * 3 2 1 5 5 H 1.48502 * 109.47619 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47055 * 120.00979 * 3 2 1 7 7 C 1.40030 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99749 * 197.06837 * 7 2 1 9 9 C 1.41545 * 120.00083 * 17.07318 * 7 2 1 10 10 C 1.41174 * 120.99642 * 23.72800 * 9 7 2 11 11 C 1.37591 * 119.01109 * 180.30051 * 10 9 7 12 12 N 1.32072 * 121.11011 * 359.72787 * 11 10 9 13 13 C 1.32467 * 122.23473 * 359.97438 * 12 11 10 14 14 N 1.39475 * 119.58293 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99889 * 355.10864 * 14 13 12 16 16 O 1.21280 * 119.99601 * 4.82950 * 15 14 13 17 17 C 1.50693 * 119.99924 * 184.83560 * 15 14 13 18 18 C 1.50702 * 109.46925 * 179.97438 * 17 15 14 19 19 C 1.34336 * 125.80591 * 124.71779 * 18 17 15 20 20 N 1.38924 * 107.12467 * 179.84757 * 19 18 17 21 21 C 1.37484 * 139.53875 * 180.02562 * 20 19 18 22 22 C 1.30910 * 116.32258 * 180.37443 * 21 20 19 23 23 S 1.75783 * 109.82108 * 359.97438 * 22 21 20 24 24 C 1.35152 * 106.52677 * 0.40896 * 20 19 18 25 25 N 1.32356 * 108.82143 * 359.74270 * 24 20 19 26 26 C 1.38599 * 120.83929 * 0.02562 * 13 12 11 27 27 H 0.96999 * 119.99928 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.49372 * 0.05364 * 10 9 7 29 29 H 1.07999 * 119.44222 * 179.75297 * 11 10 9 30 30 H 0.96994 * 119.99964 * 175.10438 * 14 13 12 31 31 H 1.08999 * 109.46970 * 299.99694 * 17 15 14 32 32 H 1.08999 * 109.47225 * 59.99814 * 17 15 14 33 33 H 1.08004 * 126.43631 * 359.95889 * 19 18 17 34 34 H 1.08005 * 121.83761 * 0.35142 * 21 20 19 35 35 H 1.07994 * 125.08860 * 180.02562 * 22 21 20 36 36 H 1.07999 * 120.60009 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0950 1.6965 -1.2126 5 1 1.2764 2.7465 0.0006 6 1 3.0953 1.6963 1.2124 7 6 2.0076 -1.2127 -0.0005 8 1 3.0519 -1.2334 0.2740 9 6 1.3467 -2.4113 -0.3610 10 6 0.1927 -2.3891 -1.1739 11 6 -0.4209 -3.5783 -1.4942 12 7 0.0551 -4.7307 -1.0588 13 6 1.1374 -4.8063 -0.2987 14 7 1.5915 -6.0532 0.1307 15 6 0.8766 -7.1621 -0.1445 16 8 -0.1145 -7.0877 -0.8394 17 6 1.3088 -8.4944 0.4115 18 6 0.3470 -9.5631 -0.0402 19 6 0.6744 -10.6887 -0.6963 20 7 -0.5037 -11.3915 -0.9159 21 6 -0.9300 -12.5640 -1.4935 22 6 -2.2176 -12.7968 -1.4520 23 16 -3.0362 -11.4752 -0.6316 24 6 -1.4997 -10.6475 -0.3858 25 7 -0.9796 -9.5494 0.1391 26 6 1.8236 -3.6620 0.0762 27 1 -0.4850 0.8400 0.0004 28 1 -0.2048 -1.4524 -1.5358 29 1 -1.3064 -3.5691 -2.1124 30 1 2.4219 -6.1222 0.6272 31 1 2.3102 -8.7307 0.0517 32 1 1.3154 -8.4488 1.5006 33 1 1.6672 -10.9913 -0.9951 34 1 -0.2407 -13.2548 -1.9562 35 1 -2.7039 -13.6705 -1.8600 36 1 2.7054 -3.7280 0.6963 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531928603.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:24 Heat of formation + Delta-G solvation = 110.472864 kcal Electronic energy + Delta-G solvation = -23466.103958 eV Core-core repulsion = 19851.013561 eV Total energy + Delta-G solvation = -3615.090397 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.71953 -39.47455 -37.77895 -36.66209 -34.37615 -33.46567 -31.70434 -30.82721 -30.62018 -28.69615 -27.09277 -25.92932 -24.20302 -22.35532 -21.69047 -20.92548 -20.61821 -19.31251 -18.49937 -17.80827 -16.72454 -16.14116 -15.91708 -15.78807 -15.22378 -15.07982 -14.72363 -14.33088 -14.14345 -13.85788 -13.75970 -13.36682 -12.95176 -12.72317 -12.65131 -12.33771 -11.96407 -11.63839 -11.46243 -11.37201 -11.20823 -10.92166 -10.60363 -10.36392 -10.08212 -9.97904 -9.61084 -9.31067 -9.26116 -8.85804 -7.99042 -7.83174 -7.61368 -6.95705 -6.76515 -4.56707 0.71960 0.76253 1.44994 2.06097 2.39339 2.67704 2.79823 2.81264 3.03743 3.05964 3.24628 3.57774 3.75875 3.88833 4.24104 4.38592 4.71738 4.71988 4.87532 5.09562 5.16125 5.25068 5.43013 5.58778 5.76548 5.90049 6.07938 6.37421 6.66839 6.68214 6.70000 6.85008 6.96197 7.18125 7.46800 7.57196 7.73220 7.89351 7.94313 8.25727 8.52048 8.76263 8.78659 8.98766 9.79179 10.10837 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.035845 B = 0.002187 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.946180 B =12797.115607 C =13319.302502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.078 3.922 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.146 3.854 10 C -0.227 4.227 11 C 0.105 3.895 12 N -0.553 5.553 13 C 0.353 3.647 14 N -0.665 5.665 15 C 0.497 3.503 16 O -0.456 6.456 17 C -0.059 4.059 18 C 0.072 3.928 19 C -0.051 4.051 20 N -0.411 5.411 21 C 0.052 3.948 22 C -0.230 4.230 23 S 0.184 5.816 24 C 0.135 3.865 25 N -0.421 5.421 26 C -0.307 4.307 27 H 0.283 0.717 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.405 0.595 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.184 0.816 34 H 0.180 0.820 35 H 0.195 0.805 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.401 -22.548 -0.636 22.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.138 3.862 10 C -0.251 4.251 11 C -0.046 4.046 12 N -0.273 5.273 13 C 0.125 3.875 14 N -0.312 5.312 15 C 0.280 3.720 16 O -0.323 6.323 17 C -0.100 4.100 18 C -0.060 4.060 19 C -0.183 4.183 20 N -0.091 5.091 21 C -0.077 4.077 22 C -0.367 4.367 23 S 0.433 5.567 24 C -0.231 4.231 25 N -0.143 5.143 26 C -0.333 4.333 27 H 0.095 0.905 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.239 0.761 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.201 0.799 34 H 0.197 0.803 35 H 0.212 0.788 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.769 -22.346 -0.687 22.426 hybrid contribution 3.120 0.607 -0.226 3.186 sum 1.351 -21.739 -0.913 21.800 Atomic orbital electron populations 1.69785 1.07714 1.29646 1.33738 1.25970 0.94752 1.01507 0.91953 0.86304 0.80108 0.79899 0.80042 1.18710 1.20241 1.18908 1.19514 0.97878 0.90762 1.40666 0.90138 1.17565 0.90284 0.91478 0.86909 1.22189 1.00804 0.98142 1.03927 1.21884 0.97696 0.87773 0.97280 1.67239 1.14012 1.28848 1.17198 1.18005 0.92297 0.83191 0.93981 1.43450 1.25805 1.05225 1.56692 1.20315 0.84675 0.84733 0.82294 1.90838 1.23421 1.84907 1.33125 1.20021 0.97145 0.90054 1.02789 1.19996 0.90775 0.94538 1.00723 1.22418 0.89463 0.95563 1.10810 1.43864 1.08536 1.15639 1.41072 1.20338 0.96679 0.89151 1.01556 1.25076 0.96021 1.05917 1.09702 1.84836 0.98656 1.11631 1.61546 1.26234 0.95090 0.95355 1.06415 1.70560 1.07528 1.15231 1.20970 1.21170 1.06652 0.92048 1.13422 0.90542 0.85655 0.86056 0.76084 0.87493 0.87364 0.79927 0.80329 0.78841 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.11 10.93 55.55 0.61 -19.50 16 2 C 0.08 1.93 5.20 -17.34 -0.09 1.84 16 3 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.46 -11.93 9.12 -37.65 -0.34 -12.28 16 8 H 0.08 1.98 7.90 -52.48 -0.41 1.57 16 9 C 0.15 3.93 5.60 -106.55 -0.60 3.33 16 10 C -0.23 -6.10 8.79 -38.70 -0.34 -6.44 16 11 C 0.10 2.74 11.15 -17.68 -0.20 2.54 16 12 N -0.55 -14.82 7.85 -12.52 -0.10 -14.92 16 13 C 0.35 8.56 7.42 -154.70 -1.15 7.41 16 14 N -0.66 -12.54 5.39 -11.49 -0.06 -12.60 16 15 C 0.50 9.45 7.78 -10.99 -0.09 9.37 16 16 O -0.46 -11.12 13.82 5.56 0.08 -11.05 16 17 C -0.06 -0.76 6.26 -29.04 -0.18 -0.94 16 18 C 0.07 1.08 5.84 -83.08 -0.49 0.59 16 19 C -0.05 -0.60 11.91 -15.71 -0.19 -0.79 16 20 N -0.41 -4.99 3.19 -63.77 -0.20 -5.19 16 21 C 0.05 0.41 11.26 -16.71 -0.19 0.23 16 22 C -0.23 -1.57 11.11 29.04 0.32 -1.25 16 23 S 0.18 1.95 23.37 -107.50 -2.51 -0.56 16 24 C 0.14 2.03 8.93 -88.71 -0.79 1.24 16 25 N -0.42 -7.63 10.69 -9.77 -0.10 -7.73 16 26 C -0.31 -7.55 9.73 -38.48 -0.37 -7.92 16 27 H 0.28 6.60 8.29 -40.82 -0.34 6.26 16 28 H 0.13 3.39 6.20 -52.49 -0.33 3.06 16 29 H 0.12 2.88 8.06 -52.49 -0.42 2.46 16 30 H 0.40 5.69 8.70 -40.82 -0.36 5.33 16 31 H 0.11 0.92 8.10 -51.93 -0.42 0.49 16 32 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.18 1.39 8.06 -52.48 -0.42 0.97 16 34 H 0.18 0.72 8.06 -52.48 -0.42 0.30 16 35 H 0.19 0.55 8.06 -52.49 -0.42 0.13 16 36 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 333.86 15.07 5.03 5.03 Total: -1.00 -37.71 333.86 -10.17 -47.88 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -3.19 Total: 8.50 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -4.69 Total: -3.07 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.14 Total: -59.95 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.51 Total: -0.56 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -37.71 -10.17 -47.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531928603.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.353 kcal (2) G-P(sol) polarization free energy of solvation -37.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds