Wall clock time and date at job start Tue Mar 31 2020 15:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86800 * 119.99760 * 2 1 4 4 H 1.48498 * 109.47234 * 272.42478 * 3 2 1 5 5 H 1.48501 * 109.47102 * 32.42603 * 3 2 1 6 6 H 1.48497 * 109.47424 * 152.42486 * 3 2 1 7 7 C 1.40027 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99893 * 347.74586 * 7 2 1 9 9 C 1.41546 * 119.99994 * 167.74234 * 7 2 1 10 10 C 1.41174 * 120.99488 * 149.40533 * 9 7 2 11 11 C 1.37596 * 119.01187 * 180.02562 * 10 9 7 12 12 N 1.32074 * 121.11191 * 359.74852 * 11 10 9 13 13 C 1.32478 * 122.22964 * 0.52681 * 12 11 10 14 14 N 1.39472 * 119.57716 * 179.75211 * 13 12 11 15 15 C 1.34770 * 120.00080 * 4.93400 * 14 13 12 16 16 O 1.21273 * 120.00014 * 355.11681 * 15 14 13 17 17 C 1.50699 * 119.99854 * 175.12373 * 15 14 13 18 18 C 1.50709 * 109.47034 * 179.97438 * 17 15 14 19 19 C 1.30908 * 121.83660 * 84.97704 * 18 17 15 20 20 S 1.75778 * 109.81773 * 180.02562 * 19 18 17 21 21 C 1.76253 * 90.70054 * 0.02562 * 20 19 18 22 22 N 1.32352 * 141.95287 * 180.02562 * 21 20 19 23 23 C 1.33880 * 109.13563 * 179.97438 * 22 21 20 24 24 C 1.34330 * 108.38828 * 359.97438 * 23 22 21 25 25 N 1.35149 * 109.21906 * 359.97438 * 21 20 19 26 26 C 1.38599 * 120.84143 * 359.47147 * 13 12 11 27 27 H 0.97002 * 120.00130 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.49355 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.43771 * 179.97438 * 11 10 9 30 30 H 0.96998 * 119.99285 * 184.93238 * 14 13 12 31 31 H 1.08999 * 109.47326 * 59.99907 * 17 15 14 32 32 H 1.09004 * 109.47110 * 299.99438 * 17 15 14 33 33 H 1.07998 * 125.09113 * 0.02562 * 19 18 17 34 34 H 1.07997 * 125.80223 * 180.02562 * 23 22 21 35 35 H 1.07992 * 126.43908 * 180.02562 * 24 23 22 36 36 H 1.07997 * 120.60106 * 180.28053 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4375 2.0761 -1.3988 5 1 1.4654 2.6373 0.7507 6 1 3.5636 1.4261 0.6481 7 6 2.0076 -1.2126 -0.0005 8 1 1.4861 -2.1374 0.1976 9 6 3.3989 -1.2265 -0.2608 10 6 4.2370 -2.2042 0.3176 11 6 5.5838 -2.1791 0.0371 12 7 6.0973 -1.2627 -0.7634 13 6 5.3552 -0.3208 -1.3267 14 7 5.9562 0.6231 -2.1592 15 6 7.2641 0.5154 -2.4660 16 8 7.9390 -0.3494 -1.9490 17 6 7.8879 1.4697 -3.4515 18 6 9.3487 1.1377 -3.6166 19 6 9.7578 0.2211 -4.4569 20 16 11.5098 0.0934 -4.3930 21 6 11.5787 1.3569 -3.1661 22 7 12.4322 2.0379 -2.4181 23 6 11.7534 2.9037 -1.6553 24 6 10.4442 2.7699 -1.9247 25 7 10.3247 1.7801 -2.8923 26 6 3.9884 -0.2649 -1.1038 27 1 -0.4850 0.8401 -0.0004 28 1 3.8271 -2.9607 0.9704 29 1 6.2314 -2.9237 0.4762 30 1 5.4328 1.3569 -2.5174 31 1 7.7871 2.4904 -3.0825 32 1 7.3835 1.3797 -4.4136 33 1 9.1152 -0.3684 -5.0940 34 1 12.1850 3.5931 -0.9448 35 1 9.6363 3.3271 -1.4741 36 1 3.3865 0.5019 -1.5686 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532500081.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:26 Heat of formation + Delta-G solvation = 88.059837 kcal Electronic energy + Delta-G solvation = -24126.344982 eV Core-core repulsion = 20510.282683 eV Total energy + Delta-G solvation = -3616.062299 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.67419 -41.46340 -39.88804 -37.82923 -36.14277 -35.57408 -33.25903 -32.54227 -31.55589 -30.56178 -29.03588 -27.92075 -24.78629 -24.23397 -23.48487 -22.75818 -21.66721 -20.95124 -19.60713 -19.30445 -18.70290 -17.78915 -17.32160 -16.94568 -16.62161 -16.38617 -16.34933 -15.99655 -15.85067 -15.47148 -15.18379 -14.80649 -14.73839 -14.62692 -14.40316 -13.78439 -13.53281 -13.22672 -12.80254 -12.76685 -12.66507 -12.61974 -12.24649 -11.84575 -11.56704 -11.50571 -11.32140 -11.30215 -11.06220 -10.15656 -9.91818 -9.71195 -9.03501 -8.95611 -8.68363 -6.74822 -0.14168 -0.07406 0.49521 0.60504 0.74126 1.07639 1.21763 1.38194 1.48130 1.56626 1.73457 1.86149 2.05624 2.08666 2.66986 3.22303 3.48170 3.51029 3.57725 3.90986 4.08908 4.18349 4.29414 4.36991 4.45384 4.51898 4.57494 4.61774 4.65415 4.74015 5.05121 5.10151 5.26543 5.47698 5.49798 5.67651 5.80962 6.00458 6.18328 6.41401 6.50459 6.65662 6.66759 7.14736 7.64528 8.11087 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.022220 B = 0.002966 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.844441 B = 9436.811834 C = 9875.197542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.048 3.952 3 Si 0.971 3.029 4 H -0.236 1.236 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.470 4.470 8 H 0.063 0.937 9 C 0.113 3.887 10 C -0.282 4.282 11 C 0.128 3.872 12 N -0.570 5.570 13 C 0.366 3.634 14 N -0.652 5.652 15 C 0.499 3.501 16 O -0.512 6.512 17 C -0.070 4.070 18 C 0.078 3.922 19 C -0.198 4.198 20 S 0.201 5.799 21 C 0.104 3.896 22 N -0.499 5.499 23 C 0.002 3.998 24 C -0.055 4.055 25 N -0.400 5.400 26 C -0.322 4.322 27 H 0.298 0.702 28 H 0.118 0.882 29 H 0.156 0.844 30 H 0.429 0.571 31 H 0.137 0.863 32 H 0.170 0.830 33 H 0.224 0.776 34 H 0.212 0.788 35 H 0.209 0.791 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.151 9.597 -10.810 20.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.169 4.169 3 Si 0.794 3.206 4 H -0.160 1.160 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.501 4.501 8 H 0.081 0.919 9 C 0.105 3.895 10 C -0.305 4.305 11 C -0.024 4.024 12 N -0.290 5.290 13 C 0.137 3.863 14 N -0.300 5.300 15 C 0.285 3.715 16 O -0.383 6.383 17 C -0.112 4.112 18 C -0.032 4.032 19 C -0.335 4.335 20 S 0.452 5.548 21 C -0.262 4.262 22 N -0.223 5.223 23 C -0.147 4.147 24 C -0.188 4.188 25 N -0.079 5.079 26 C -0.347 4.347 27 H 0.109 0.891 28 H 0.136 0.864 29 H 0.173 0.827 30 H 0.268 0.732 31 H 0.155 0.845 32 H 0.187 0.813 33 H 0.241 0.759 34 H 0.228 0.772 35 H 0.226 0.774 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.078 8.163 -11.343 22.067 hybrid contribution -3.228 1.358 1.300 3.735 sum 13.851 9.520 -10.043 19.579 Atomic orbital electron populations 1.69633 1.09214 1.31997 1.35598 1.26915 0.95492 1.04446 0.90013 0.85434 0.78763 0.75857 0.80581 1.16017 1.20719 1.18646 1.19494 0.91792 0.95467 1.43305 0.91861 1.17890 0.93095 0.90641 0.87917 1.22122 0.94621 1.05572 1.08212 1.22327 0.92841 0.94688 0.92590 1.67462 1.38708 1.07063 1.15786 1.18225 0.88057 0.89446 0.90541 1.43468 1.11037 1.27903 1.47610 1.21239 0.81296 0.85874 0.83042 1.90846 1.60945 1.35419 1.51111 1.20595 0.87378 1.00633 1.02577 1.18566 0.91144 0.97774 0.95741 1.25266 0.99206 1.02749 1.06305 1.84547 1.01074 1.34134 1.35083 1.26707 0.84519 1.06922 1.08030 1.70530 1.31828 1.10156 1.09821 1.22948 0.90043 1.00367 1.01361 1.23352 1.01040 0.97203 0.97175 1.43945 1.06564 1.28022 1.29411 1.21335 0.93591 1.08614 1.11191 0.89090 0.86391 0.82685 0.73246 0.84461 0.81252 0.75935 0.77158 0.77423 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.57 13.92 21.84 0.30 -42.26 16 2 C 0.05 2.37 5.48 85.29 0.47 2.84 16 3 Si 0.97 38.09 24.42 68.60 1.68 39.77 16 4 H -0.24 -7.89 6.67 99.48 0.66 -7.22 16 5 H -0.28 -10.48 7.11 99.48 0.71 -9.77 16 6 H -0.26 -10.95 6.65 99.48 0.66 -10.29 16 7 C -0.47 -24.70 9.67 23.52 0.23 -24.47 16 8 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 9 C 0.11 5.48 5.17 -21.11 -0.11 5.37 16 10 C -0.28 -12.76 9.90 22.84 0.23 -12.54 16 11 C 0.13 5.46 11.15 84.50 0.94 6.41 16 12 N -0.57 -25.45 7.85 -193.52 -1.52 -26.97 16 13 C 0.37 14.88 7.42 132.75 0.98 15.86 16 14 N -0.65 -18.90 5.39 -308.66 -1.66 -20.57 16 15 C 0.50 13.67 7.78 87.66 0.68 14.35 16 16 O -0.51 -19.58 14.29 -3.01 -0.04 -19.63 16 17 C -0.07 -1.03 6.01 29.10 0.17 -0.85 16 18 C 0.08 1.58 5.24 41.73 0.22 1.80 16 19 C -0.20 -3.55 10.81 67.87 0.73 -2.82 16 20 S 0.20 4.18 23.37 -56.49 -1.32 2.86 16 21 C 0.10 2.85 8.93 179.68 1.60 4.45 16 22 N -0.50 -14.68 11.32 -196.80 -2.23 -16.90 16 23 C 0.00 0.04 11.82 83.49 0.99 1.03 16 24 C -0.06 -1.18 11.97 82.67 0.99 -0.19 16 25 N -0.40 -9.74 3.19 -342.28 -1.09 -10.83 16 26 C -0.32 -13.94 6.94 22.99 0.16 -13.78 16 27 H 0.30 13.43 8.29 -92.71 -0.77 12.66 16 28 H 0.12 5.02 8.06 -2.91 -0.02 4.99 16 29 H 0.16 5.68 8.06 -2.91 -0.02 5.65 16 30 H 0.43 8.61 8.70 -92.71 -0.81 7.80 16 31 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.17 1.04 8.13 -2.39 -0.02 1.02 16 33 H 0.22 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.21 3.24 8.06 -2.91 -0.02 3.21 16 35 H 0.21 2.93 8.06 -2.91 -0.02 2.91 16 36 H 0.12 4.83 4.43 -2.91 -0.01 4.81 16 Total: -1.00 -76.67 328.51 2.67 -74.00 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.26 Total: 23.08 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 8.29 Total: -2.55 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -6.20 Total: -117.53 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.04 Total: -19.63 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 1.68 Total: 39.77 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -1.32 Total: 2.86 kcal Total: -76.67 2.67 -74.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532500081.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.064 kcal (2) G-P(sol) polarization free energy of solvation -76.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds