Wall clock time and date at job start Tue Mar 31 2020 15:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86803 * 119.99651 * 2 1 4 4 H 1.48507 * 109.46840 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47347 * 299.99172 * 3 2 1 6 6 H 1.48497 * 109.47230 * 59.99660 * 3 2 1 7 7 C 1.39926 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00690 * 162.62025 * 7 2 1 9 9 C 1.41443 * 119.99877 * 342.62021 * 7 2 1 10 10 C 1.40790 * 120.17706 * 154.93827 * 9 7 2 11 11 C 1.37707 * 120.04208 * 179.97438 * 10 9 7 12 12 C 1.38382 * 120.40587 * 0.02562 * 11 10 9 13 13 C 1.39894 * 120.35377 * 359.78480 * 12 11 10 14 14 C 1.47867 * 120.02096 * 180.23537 * 13 12 11 15 15 N 1.31952 * 126.56411 * 359.92218 * 14 13 12 16 16 C 1.34943 * 105.51201 * 179.86036 * 15 14 13 17 17 C 1.48459 * 126.32136 * 180.11260 * 16 15 14 18 18 C 1.39290 * 120.08910 * 0.04879 * 17 16 15 19 19 C 1.38269 * 119.89941 * 179.71787 * 18 17 16 20 20 F 1.35098 * 119.94915 * 180.27573 * 19 18 17 21 21 C 1.38487 * 120.09535 * 0.55731 * 19 18 17 22 22 C 1.38493 * 120.19242 * 359.71886 * 21 19 18 23 23 F 1.35100 * 119.95545 * 180.02562 * 22 21 19 24 24 C 1.38272 * 120.09358 * 359.97438 * 22 21 19 25 25 N 1.30835 * 107.36354 * 0.40798 * 16 15 14 26 26 O 1.21272 * 110.33361 * 359.73853 * 25 16 15 27 27 C 1.39017 * 119.95298 * 0.44252 * 13 12 11 28 28 H 0.96991 * 119.99762 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.98002 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.80309 * 180.02562 * 11 10 9 31 31 H 1.07997 * 119.82200 * 180.02562 * 12 11 10 32 32 H 1.07994 * 120.05112 * 0.02562 * 18 17 16 33 33 H 1.08006 * 119.90439 * 179.73854 * 21 19 18 34 34 H 1.07996 * 120.04742 * 179.97438 * 24 22 21 35 35 H 1.07997 * 120.19995 * 179.81322 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8834 2.3965 1.2124 7 6 2.0080 -1.2117 0.0005 8 1 3.0511 -1.2333 -0.2788 9 6 1.3493 -2.4086 0.3670 10 6 1.8194 -3.6485 -0.1061 11 6 1.1763 -4.8121 0.2529 12 6 0.0661 -4.7728 1.0781 13 6 -0.4129 -3.5503 1.5610 14 6 -1.5966 -3.5174 2.4466 15 7 -2.2978 -4.5557 2.8605 16 6 -3.2711 -4.0450 3.6433 17 6 -4.3242 -4.8148 4.3521 18 6 -4.3685 -6.2026 4.2416 19 6 -5.3474 -6.9162 4.9081 20 9 -5.3879 -8.2628 4.8061 21 6 -6.2899 -6.2522 5.6753 22 6 -6.2530 -4.8720 5.7832 23 9 -7.1745 -4.2291 6.5334 24 6 -5.2737 -4.1510 5.1252 25 7 -3.1194 -2.7455 3.6572 26 8 -2.1668 -2.4252 2.9785 27 6 0.2221 -2.3663 1.2042 28 1 -0.4849 0.8400 -0.0004 29 1 2.6850 -3.6872 -0.7509 30 1 1.5404 -5.7612 -0.1119 31 1 -0.4308 -5.6911 1.3540 32 1 -3.6363 -6.7209 3.6402 33 1 -7.0558 -6.8124 6.1912 34 1 -5.2459 -3.0747 5.2096 35 1 -0.1461 -1.4201 1.5722 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547033712.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:49 Heat of formation + Delta-G solvation = 19.513352 kcal Electronic energy + Delta-G solvation = -25372.110517 eV Core-core repulsion = 21166.942682 eV Total energy + Delta-G solvation = -4205.167835 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.31861 -49.28492 -45.10514 -39.19949 -37.83212 -35.51172 -34.02161 -32.93978 -31.04353 -30.75272 -29.90281 -29.26193 -25.63588 -24.94941 -24.10060 -22.80342 -22.36092 -20.92266 -20.43270 -18.49942 -17.70882 -17.65840 -17.38458 -16.75726 -16.65294 -16.28162 -15.91006 -15.59929 -15.44233 -14.94836 -14.88702 -14.57933 -14.32540 -13.60914 -13.17717 -12.90324 -12.83721 -12.69029 -12.32222 -12.24985 -12.07665 -11.90554 -11.61130 -11.35117 -11.23889 -10.99787 -10.78974 -10.61965 -10.22288 -9.97854 -9.87229 -9.36586 -9.12208 -9.07866 -7.70923 -7.70455 -6.96052 -4.57862 0.25826 0.62346 1.20706 2.20616 2.63007 2.92658 3.00369 3.04899 3.09194 3.14531 3.25401 3.29896 3.69475 3.80861 3.83108 4.37691 4.41869 4.45488 4.52200 4.73035 4.96059 5.36015 5.38027 5.41850 5.57783 5.66399 5.86474 5.94789 6.04305 6.16072 6.28625 6.36296 6.55396 6.77002 6.84951 7.03404 7.14741 7.50053 7.63243 7.73965 7.93173 8.30260 8.41810 8.61454 8.65437 9.99232 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019296 B = 0.002704 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.732714 B =10353.976917 C =11720.670816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.456 4.456 8 H 0.084 0.916 9 C 0.101 3.899 10 C -0.197 4.197 11 C -0.097 4.097 12 C -0.185 4.185 13 C -0.037 4.037 14 C 0.279 3.721 15 N -0.489 5.489 16 C 0.193 3.807 17 C 0.056 3.944 18 C -0.123 4.123 19 C 0.131 3.869 20 F -0.126 7.126 21 C -0.181 4.181 22 C 0.131 3.869 23 F -0.127 7.127 24 C -0.134 4.134 25 N -0.382 5.382 26 O 0.089 5.911 27 C -0.110 4.110 28 H 0.285 0.715 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.515 -7.167 7.867 13.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.485 4.485 8 H 0.102 0.898 9 C 0.098 3.902 10 C -0.217 4.217 11 C -0.115 4.115 12 C -0.206 4.206 13 C -0.040 4.040 14 C 0.065 3.935 15 N -0.222 5.222 16 C -0.077 4.077 17 C 0.054 3.946 18 C -0.144 4.144 19 C 0.111 3.889 20 F -0.105 7.105 21 C -0.201 4.201 22 C 0.111 3.889 23 F -0.106 7.106 24 C -0.154 4.154 25 N -0.090 5.090 26 O 0.028 5.972 27 C -0.131 4.131 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.176 0.824 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.412 -6.910 8.364 14.363 hybrid contribution 0.155 0.737 -0.039 0.755 sum -9.257 -6.172 8.325 13.896 Atomic orbital electron populations 1.69761 1.07628 1.29827 1.34172 1.25951 0.94794 1.01633 0.92057 0.86214 0.80948 0.80618 0.78781 1.18262 1.19855 1.19500 1.19625 0.98196 0.90797 1.39923 0.89778 1.17491 0.90886 0.92639 0.89161 1.21237 1.03127 0.92671 1.04668 1.20493 0.95681 0.97169 0.98179 1.20333 1.00314 0.94773 1.05229 1.17211 0.91210 0.96279 0.99316 1.26956 0.94839 0.78915 0.92822 1.72224 1.06672 1.28347 1.14951 1.23425 0.97130 0.87849 0.99264 1.16721 0.91577 0.91050 0.95266 1.21264 0.99282 0.93115 1.00692 1.16994 0.96086 0.77484 0.98314 1.91558 1.95925 1.28406 1.94571 1.21123 1.02007 0.93488 1.03500 1.16946 0.88802 0.89424 0.93720 1.91553 1.63800 1.81572 1.73634 1.21197 0.94208 1.02031 0.98003 1.74806 1.05102 1.15088 1.13972 1.85412 1.30667 1.35409 1.45754 1.21598 0.97779 0.95479 0.98288 0.90384 0.88076 0.88090 0.87572 0.82418 0.82981 0.83039 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.87 10.97 55.55 0.61 -18.26 16 2 C 0.07 1.71 5.14 -17.35 -0.09 1.63 16 3 Si 0.91 17.31 29.59 -169.99 -5.03 12.28 16 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 6 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.46 -10.94 9.05 -37.73 -0.34 -11.28 16 8 H 0.08 1.93 7.90 -52.48 -0.41 1.51 16 9 C 0.10 2.41 5.57 -106.87 -0.59 1.82 16 10 C -0.20 -4.26 9.78 -38.81 -0.38 -4.64 16 11 C -0.10 -1.92 10.01 -39.72 -0.40 -2.32 16 12 C -0.19 -3.80 9.71 -38.91 -0.38 -4.17 16 13 C -0.04 -0.81 5.87 -105.05 -0.62 -1.43 16 14 C 0.28 5.70 8.00 -13.80 -0.11 5.59 16 15 N -0.49 -9.28 10.93 -10.22 -0.11 -9.39 16 16 C 0.19 3.37 7.79 -156.29 -1.22 2.15 16 17 C 0.06 0.78 5.87 -104.91 -0.62 0.16 16 18 C -0.12 -1.51 9.68 -39.18 -0.38 -1.89 16 19 C 0.13 1.40 7.29 -39.48 -0.29 1.11 16 20 F -0.13 -1.36 17.26 2.25 0.04 -1.32 16 21 C -0.18 -1.73 10.00 -39.40 -0.39 -2.12 16 22 C 0.13 1.39 7.29 -39.47 -0.29 1.11 16 23 F -0.13 -1.36 17.26 2.25 0.04 -1.32 16 24 C -0.13 -1.63 9.67 -39.18 -0.38 -2.01 16 25 N -0.38 -7.11 11.84 31.20 0.37 -6.74 16 26 O 0.09 1.79 11.10 16.66 0.18 1.98 16 27 C -0.11 -2.59 8.36 -38.45 -0.32 -2.91 16 28 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 29 H 0.10 2.02 8.06 -52.48 -0.42 1.59 16 30 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.11 2.02 7.86 -52.49 -0.41 1.61 16 32 H 0.16 1.95 7.87 -52.49 -0.41 1.54 16 33 H 0.15 1.09 8.06 -52.48 -0.42 0.66 16 34 H 0.15 1.82 7.86 -52.49 -0.41 1.40 16 35 H 0.13 3.23 6.05 -52.49 -0.32 2.91 16 LS Contribution 329.36 15.07 4.96 4.96 Total: -1.00 -24.47 329.36 -8.10 -32.57 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -2.37 Total: 4.46 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -6.79 Total: -19.20 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.87 Total: -34.39 kcal Atomic # 8 Polarization: 1.79 SS G_CDS: 0.18 Total: 1.98 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.08 Total: -2.65 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -24.47 -8.10 -32.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547033712.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.084 kcal (2) G-P(sol) polarization free energy of solvation -24.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds