Wall clock time and date at job start Tue Mar 31 2020 15:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86803 * 119.99651 * 2 1 4 4 H 1.48507 * 109.46840 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47347 * 299.99172 * 3 2 1 6 6 H 1.48497 * 109.47230 * 59.99660 * 3 2 1 7 7 C 1.39926 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00690 * 162.62025 * 7 2 1 9 9 C 1.41443 * 119.99877 * 342.62021 * 7 2 1 10 10 C 1.40790 * 120.17706 * 154.93827 * 9 7 2 11 11 C 1.37707 * 120.04208 * 179.97438 * 10 9 7 12 12 C 1.38382 * 120.40587 * 0.02562 * 11 10 9 13 13 C 1.39894 * 120.35377 * 359.78480 * 12 11 10 14 14 C 1.47867 * 120.02096 * 180.23537 * 13 12 11 15 15 N 1.31952 * 126.56411 * 359.92218 * 14 13 12 16 16 C 1.34943 * 105.51201 * 179.86036 * 15 14 13 17 17 C 1.48459 * 126.32136 * 180.11260 * 16 15 14 18 18 C 1.39290 * 120.08910 * 0.04879 * 17 16 15 19 19 C 1.38269 * 119.89941 * 179.71787 * 18 17 16 20 20 F 1.35098 * 119.94915 * 180.27573 * 19 18 17 21 21 C 1.38487 * 120.09535 * 0.55731 * 19 18 17 22 22 C 1.38493 * 120.19242 * 359.71886 * 21 19 18 23 23 F 1.35100 * 119.95545 * 180.02562 * 22 21 19 24 24 C 1.38272 * 120.09358 * 359.97438 * 22 21 19 25 25 N 1.30835 * 107.36354 * 0.40798 * 16 15 14 26 26 O 1.21272 * 110.33361 * 359.73853 * 25 16 15 27 27 C 1.39017 * 119.95298 * 0.44252 * 13 12 11 28 28 H 0.96991 * 119.99762 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.98002 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.80309 * 180.02562 * 11 10 9 31 31 H 1.07997 * 119.82200 * 180.02562 * 12 11 10 32 32 H 1.07994 * 120.05112 * 0.02562 * 18 17 16 33 33 H 1.08006 * 119.90439 * 179.73854 * 21 19 18 34 34 H 1.07996 * 120.04742 * 179.97438 * 24 22 21 35 35 H 1.07997 * 120.19995 * 179.81322 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8834 2.3965 1.2124 7 6 2.0080 -1.2117 0.0005 8 1 3.0511 -1.2333 -0.2788 9 6 1.3493 -2.4086 0.3670 10 6 1.8194 -3.6485 -0.1061 11 6 1.1763 -4.8121 0.2529 12 6 0.0661 -4.7728 1.0781 13 6 -0.4129 -3.5503 1.5610 14 6 -1.5966 -3.5174 2.4466 15 7 -2.2978 -4.5557 2.8605 16 6 -3.2711 -4.0450 3.6433 17 6 -4.3242 -4.8148 4.3521 18 6 -4.3685 -6.2026 4.2416 19 6 -5.3474 -6.9162 4.9081 20 9 -5.3879 -8.2628 4.8061 21 6 -6.2899 -6.2522 5.6753 22 6 -6.2530 -4.8720 5.7832 23 9 -7.1745 -4.2291 6.5334 24 6 -5.2737 -4.1510 5.1252 25 7 -3.1194 -2.7455 3.6572 26 8 -2.1668 -2.4252 2.9785 27 6 0.2221 -2.3663 1.2042 28 1 -0.4849 0.8400 -0.0004 29 1 2.6850 -3.6872 -0.7509 30 1 1.5404 -5.7612 -0.1119 31 1 -0.4308 -5.6911 1.3540 32 1 -3.6363 -6.7209 3.6402 33 1 -7.0558 -6.8124 6.1912 34 1 -5.2459 -3.0747 5.2096 35 1 -0.1461 -1.4201 1.5722 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547033712.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:48 Heat of formation + Delta-G solvation = 9.367446 kcal Electronic energy + Delta-G solvation = -25372.550477 eV Core-core repulsion = 21166.942682 eV Total energy + Delta-G solvation = -4205.607795 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.17436 -50.14190 -46.58382 -40.17188 -39.52105 -36.95012 -35.69678 -34.40504 -32.20073 -31.75656 -31.56415 -30.80021 -27.33205 -26.18692 -25.53551 -23.84957 -23.70817 -22.57524 -21.86584 -19.77377 -19.20467 -19.15437 -18.39786 -18.05023 -17.59567 -17.18991 -17.14328 -16.73094 -16.52304 -16.44996 -16.26614 -15.87514 -15.38652 -15.22101 -14.59563 -14.33588 -14.04040 -13.97788 -13.76987 -13.68178 -13.21679 -13.19272 -12.87940 -12.84178 -12.74938 -12.57360 -12.31999 -12.15052 -11.73550 -11.63482 -11.52952 -11.03936 -10.15441 -10.02568 -9.44247 -9.37184 -8.66975 -6.37971 -0.80342 -0.34527 -0.28460 0.86178 0.96956 1.38182 1.43065 1.55910 1.57349 1.63753 2.04898 2.20180 2.21900 2.61742 2.70935 2.74710 3.23939 3.55358 3.57837 3.62742 3.75848 3.85944 4.12958 4.42510 4.47697 4.51772 4.56084 4.65463 4.72798 4.79780 4.88302 4.96091 5.06557 5.15711 5.30622 5.44267 5.46741 5.79999 5.93224 6.00907 6.22753 6.54351 6.86331 6.88439 6.91921 8.30303 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019296 B = 0.002704 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.732714 B =10353.976917 C =11720.670816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.036 3.964 3 Si 0.978 3.022 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.489 4.489 8 H 0.086 0.914 9 C 0.073 3.927 10 C -0.202 4.202 11 C -0.092 4.092 12 C -0.180 4.180 13 C -0.042 4.042 14 C 0.267 3.733 15 N -0.487 5.487 16 C 0.206 3.794 17 C 0.029 3.971 18 C -0.119 4.119 19 C 0.135 3.865 20 F -0.123 7.123 21 C -0.154 4.154 22 C 0.134 3.866 23 F -0.124 7.124 24 C -0.130 4.130 25 N -0.393 5.393 26 O 0.067 5.933 27 C -0.135 4.135 28 H 0.289 0.711 29 H 0.116 0.884 30 H 0.141 0.859 31 H 0.125 0.875 32 H 0.155 0.845 33 H 0.185 0.815 34 H 0.149 0.851 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.430 -8.912 8.673 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.177 1.177 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.518 4.518 8 H 0.104 0.896 9 C 0.071 3.929 10 C -0.222 4.222 11 C -0.109 4.109 12 C -0.201 4.201 13 C -0.045 4.045 14 C 0.052 3.948 15 N -0.221 5.221 16 C -0.064 4.064 17 C 0.027 3.973 18 C -0.140 4.140 19 C 0.115 3.885 20 F -0.102 7.102 21 C -0.174 4.174 22 C 0.114 3.886 23 F -0.103 7.103 24 C -0.151 4.151 25 N -0.104 5.104 26 O 0.011 5.989 27 C -0.156 4.156 28 H 0.100 0.900 29 H 0.134 0.866 30 H 0.158 0.842 31 H 0.143 0.857 32 H 0.173 0.827 33 H 0.203 0.797 34 H 0.166 0.834 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.306 -8.653 9.156 16.277 hybrid contribution 0.286 1.055 -0.198 1.111 sum -10.021 -7.598 8.958 15.440 Atomic orbital electron populations 1.69829 1.08987 1.30763 1.35302 1.26726 0.95404 1.04560 0.91236 0.85197 0.79703 0.76426 0.78717 1.17738 1.19306 1.19373 1.19870 0.98522 0.91802 1.41569 0.89578 1.17838 0.91472 0.93850 0.89734 1.21511 1.03586 0.92537 1.04579 1.20888 0.94784 0.98220 0.97058 1.20660 1.00224 0.94804 1.04363 1.17362 0.91468 0.96327 0.99347 1.26861 0.95076 0.79502 0.93348 1.72209 1.06874 1.27895 1.15082 1.23995 0.96859 0.87616 0.97972 1.16681 0.91975 0.91521 0.97117 1.21238 0.99661 0.92457 1.00662 1.16889 0.95864 0.77509 0.98224 1.91574 1.95878 1.28160 1.94549 1.21389 1.01437 0.92930 1.01598 1.16855 0.88406 0.89765 0.93530 1.91570 1.63567 1.81652 1.73492 1.21184 0.94168 1.02086 0.97668 1.74794 1.05117 1.15871 1.14617 1.85402 1.31338 1.35754 1.46387 1.21446 0.98921 0.95474 0.99793 0.90010 0.86611 0.84164 0.85749 0.82741 0.79749 0.83351 0.86942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.10 10.97 21.82 0.24 -40.86 16 2 C 0.04 1.72 5.14 85.25 0.44 2.16 16 3 Si 0.98 36.23 29.59 68.60 2.03 38.26 16 4 H -0.25 -9.08 7.11 99.48 0.71 -8.38 16 5 H -0.27 -9.61 7.11 99.48 0.71 -8.91 16 6 H -0.27 -9.79 7.11 99.48 0.71 -9.09 16 7 C -0.49 -24.17 9.05 23.47 0.21 -23.96 16 8 H 0.09 4.05 7.90 -2.91 -0.02 4.02 16 9 C 0.07 3.62 5.57 -21.32 -0.12 3.50 16 10 C -0.20 -8.68 9.78 22.77 0.22 -8.45 16 11 C -0.09 -3.48 10.01 22.18 0.22 -3.26 16 12 C -0.18 -7.18 9.71 22.71 0.22 -6.96 16 13 C -0.04 -1.88 5.87 -20.14 -0.12 -2.00 16 14 C 0.27 11.20 8.00 87.31 0.70 11.90 16 15 N -0.49 -18.51 10.93 -302.30 -3.30 -21.82 16 16 C 0.21 7.19 7.79 137.37 1.07 8.26 16 17 C 0.03 0.78 5.87 -20.05 -0.12 0.67 16 18 C -0.12 -2.74 9.68 22.53 0.22 -2.52 16 19 C 0.13 2.49 7.29 22.34 0.16 2.66 16 20 F -0.12 -2.29 17.26 44.97 0.78 -1.51 16 21 C -0.15 -2.36 10.00 22.39 0.22 -2.13 16 22 C 0.13 2.50 7.29 22.34 0.16 2.66 16 23 F -0.12 -2.33 17.26 44.97 0.78 -1.55 16 24 C -0.13 -3.00 9.67 22.53 0.22 -2.78 16 25 N -0.39 -15.01 11.84 -57.76 -0.68 -15.70 16 26 O 0.07 2.84 11.10 69.67 0.77 3.62 16 27 C -0.13 -6.63 8.36 23.00 0.19 -6.44 16 28 H 0.29 13.20 8.30 -92.72 -0.77 12.43 16 29 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 30 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 31 H 0.12 4.49 7.86 -2.91 -0.02 4.47 16 32 H 0.15 3.62 7.87 -2.91 -0.02 3.60 16 33 H 0.19 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.15 3.48 7.86 -2.91 -0.02 3.46 16 35 H 0.11 5.89 6.05 -2.91 -0.02 5.88 16 Total: -1.00 -54.12 329.36 5.69 -48.43 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 1.17 Total: 17.83 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: 3.91 Total: -26.71 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -3.75 Total: -78.37 kcal Atomic # 8 Polarization: 2.84 SS G_CDS: 0.77 Total: 3.62 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 1.55 Total: -3.06 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Total: -54.12 5.69 -48.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547033712.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.798 kcal (2) G-P(sol) polarization free energy of solvation -54.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds