Wall clock time and date at job start Tue Mar 31 2020 15:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30698 * 1 3 3 Si 1.86803 * 120.00296 * 2 1 4 4 H 1.48498 * 109.47614 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46974 * 300.00181 * 3 2 1 6 6 H 1.48500 * 109.47134 * 59.99936 * 3 2 1 7 7 C 1.40153 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00773 * 197.93103 * 7 2 1 9 9 C 1.40971 * 119.99440 * 17.93422 * 7 2 1 10 10 C 1.40957 * 120.10054 * 24.69520 * 9 7 2 11 11 C 1.36213 * 119.89786 * 180.02562 * 10 9 7 12 12 C 1.40118 * 120.09913 * 0.02562 * 11 10 9 13 13 C 1.47453 * 119.89798 * 179.97438 * 12 11 10 14 14 N 1.32163 * 126.57893 * 180.02562 * 13 12 11 15 15 C 1.34827 * 105.50993 * 180.02562 * 14 13 12 16 16 C 1.48407 * 126.29898 * 179.97438 * 15 14 13 17 17 C 1.39352 * 120.08502 * 0.29257 * 16 15 14 18 18 C 1.37977 * 119.95176 * 180.25806 * 17 16 15 19 19 C 1.38517 * 120.11661 * 359.71791 * 18 17 16 20 20 F 1.35106 * 119.91360 * 180.02562 * 19 18 17 21 21 C 1.38748 * 120.17009 * 0.02562 * 19 18 17 22 22 F 1.35103 * 119.97660 * 180.02562 * 21 19 18 23 23 C 1.38176 * 120.04673 * 359.97438 * 21 19 18 24 24 N 1.30941 * 107.40400 * 0.23427 * 15 14 13 25 25 O 1.21276 * 110.35468 * 359.58426 * 24 15 14 26 26 C 1.40128 * 120.20563 * 0.25339 * 12 11 10 27 27 C 1.36211 * 120.09532 * 359.48230 * 26 12 11 28 28 H 0.96998 * 119.99954 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.05551 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.94988 * 180.02562 * 11 10 9 31 31 H 1.08000 * 120.02094 * 0.02562 * 17 16 15 32 32 H 1.07996 * 119.93581 * 179.75017 * 18 17 16 33 33 H 1.08007 * 120.05690 * 180.02562 * 23 21 19 34 34 H 1.08000 * 119.95433 * 179.72283 * 26 12 11 35 35 H 1.08001 * 120.04688 * 180.27494 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 3.7011 1.3464 -0.0006 5 1 1.8823 2.3964 -1.2125 6 1 1.8824 2.3964 1.2125 7 6 2.0078 -1.2137 -0.0005 8 1 3.0485 -1.2366 0.2874 9 6 1.3543 -2.4047 -0.3770 10 6 0.2263 -2.3557 -1.2208 11 6 -0.4024 -3.5090 -1.5816 12 6 0.0704 -4.7427 -1.1148 13 6 -0.6138 -5.9884 -1.5076 14 7 -0.2833 -7.2160 -1.1467 15 6 -1.1846 -8.0222 -1.7430 16 6 -1.2393 -9.5021 -1.6462 17 6 -0.3012 -10.1869 -0.8762 18 6 -0.3514 -11.5632 -0.7924 19 6 -1.3362 -12.2652 -1.4677 20 9 -1.3818 -13.6128 -1.3824 21 6 -2.2759 -11.5880 -2.2315 22 9 -3.2351 -12.2765 -2.8881 23 6 -2.2321 -10.2097 -2.3202 24 7 -1.9994 -7.2595 -2.4279 25 8 -1.6921 -6.0932 -2.3013 26 6 1.1880 -4.7959 -0.2711 27 6 1.8261 -3.6480 0.0905 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1392 -1.4053 -1.5808 30 1 -1.2665 -3.4725 -2.2284 31 1 0.4668 -9.6409 -0.3484 32 1 0.3782 -12.0939 -0.1988 33 1 -2.9638 -9.6824 -2.9144 34 1 1.5462 -5.7486 0.0900 35 1 2.6900 -3.6903 0.7373 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000550623761.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:28 Heat of formation + Delta-G solvation = 14.936450 kcal Electronic energy + Delta-G solvation = -25003.056702 eV Core-core repulsion = 20797.690397 eV Total energy + Delta-G solvation = -4205.366305 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.71760 -48.78837 -44.78846 -39.20568 -37.90937 -35.25713 -34.35991 -32.60045 -31.20589 -30.53945 -29.78398 -29.54812 -26.13995 -24.63204 -23.85106 -22.71056 -22.00114 -21.00580 -20.39996 -18.32038 -17.75667 -17.66392 -17.46739 -17.24938 -16.67418 -16.54736 -15.73859 -15.33433 -15.19969 -14.80549 -14.71873 -14.28566 -14.20856 -13.68378 -13.29147 -12.98991 -12.86439 -12.64106 -12.36820 -12.21142 -12.05858 -11.74510 -11.60677 -11.39756 -11.32981 -11.14471 -10.91301 -10.51164 -10.13628 -10.05871 -9.75239 -9.47856 -9.34367 -8.74299 -7.93577 -7.64206 -7.26028 -4.80182 0.31490 0.70070 1.37770 2.30213 2.69913 2.83820 2.86690 2.89665 3.11140 3.36860 3.42046 3.48108 3.58662 3.69820 4.03248 4.20791 4.25153 4.53752 4.72232 4.81406 5.22607 5.32298 5.46036 5.53435 5.61813 5.76007 6.00212 6.02804 6.08701 6.29661 6.38054 6.48258 6.58374 6.64444 6.81590 6.93385 7.22873 7.45863 7.63398 7.67219 7.82578 8.17115 8.38578 8.50425 8.68703 9.63957 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.040489 B = 0.002068 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.376632 B =13535.118579 C =14143.189193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.070 3.930 3 Si 0.917 3.083 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.421 4.421 8 H 0.091 0.909 9 C 0.128 3.872 10 C -0.175 4.175 11 C -0.050 4.050 12 C -0.203 4.203 13 C 0.289 3.711 14 N -0.520 5.520 15 C 0.201 3.799 16 C 0.018 3.982 17 C -0.058 4.058 18 C -0.126 4.126 19 C 0.076 3.924 20 F -0.127 7.127 21 C 0.066 3.934 22 F -0.126 7.126 23 C -0.097 4.097 24 N -0.402 5.402 25 O 0.059 5.941 26 C -0.016 4.016 27 C -0.233 4.233 28 H 0.291 0.709 29 H 0.125 0.875 30 H 0.101 0.899 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.106 0.894 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.567 -11.467 -1.279 11.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.153 4.153 3 Si 0.740 3.260 4 H -0.178 1.178 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.448 4.448 8 H 0.109 0.891 9 C 0.124 3.876 10 C -0.194 4.194 11 C -0.071 4.071 12 C -0.209 4.209 13 C 0.082 3.918 14 N -0.255 5.255 15 C -0.069 4.069 16 C 0.016 3.984 17 C -0.078 4.078 18 C -0.145 4.145 19 C 0.055 3.945 20 F -0.106 7.106 21 C 0.046 3.954 22 F -0.105 7.105 23 C -0.118 4.118 24 N -0.116 5.116 25 O 0.003 5.997 26 C -0.036 4.036 27 C -0.253 4.253 28 H 0.103 0.897 29 H 0.142 0.858 30 H 0.119 0.881 31 H 0.173 0.827 32 H 0.171 0.829 33 H 0.171 0.829 34 H 0.124 0.876 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.262 -12.002 -1.559 12.169 hybrid contribution -0.028 0.523 -0.073 0.529 sum -1.290 -11.479 -1.631 11.666 Atomic orbital electron populations 1.69757 1.08042 1.30643 1.29414 1.26208 0.94913 1.02335 0.91874 0.86092 0.81096 0.79698 0.79132 1.17842 1.19135 1.19440 1.20008 0.98596 0.91148 1.35017 0.89130 1.17872 0.90366 0.92309 0.87102 1.20966 0.99681 0.96957 1.01815 1.20477 0.97618 0.91611 0.97363 1.16631 1.03603 0.85331 1.15314 1.26647 0.84085 0.94601 0.86515 1.72213 1.26416 0.99149 1.27709 1.23369 0.91735 0.95438 0.96381 1.17163 0.95981 0.86790 0.98449 1.21229 0.97784 0.92766 0.96047 1.21041 0.98435 0.94291 1.00750 1.17818 0.97928 0.77656 1.01132 1.91537 1.95989 1.28269 1.94804 1.17375 0.89871 0.89914 0.98234 1.91543 1.61032 1.79138 1.78787 1.21067 0.99474 0.91134 1.00113 1.74747 1.23510 0.89833 1.23535 1.85310 1.39641 1.21205 1.53571 1.20298 0.92354 0.97605 0.93341 1.20685 1.04556 0.92324 1.07716 0.89745 0.85770 0.88117 0.82661 0.82882 0.82860 0.87615 0.87784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -16.67 10.96 55.56 0.61 -16.06 16 2 C 0.07 1.49 5.13 -17.32 -0.09 1.40 16 3 Si 0.92 15.72 29.60 -169.99 -5.03 10.69 16 4 H -0.26 -4.34 7.11 56.52 0.40 -3.94 16 5 H -0.27 -4.53 7.11 56.52 0.40 -4.13 16 6 H -0.27 -4.59 7.11 56.52 0.40 -4.19 16 7 C -0.42 -9.44 9.03 -37.83 -0.34 -9.78 16 8 H 0.09 1.92 7.91 -52.49 -0.42 1.50 16 9 C 0.13 2.94 5.57 -106.80 -0.60 2.34 16 10 C -0.17 -3.96 8.63 -39.28 -0.34 -4.29 16 11 C -0.05 -1.07 9.65 -39.61 -0.38 -1.45 16 12 C -0.20 -4.26 5.89 -104.73 -0.62 -4.87 16 13 C 0.29 5.78 7.98 -13.88 -0.11 5.67 16 14 N -0.52 -9.86 10.92 -10.22 -0.11 -9.97 16 15 C 0.20 3.51 7.79 -156.33 -1.22 2.29 16 16 C 0.02 0.25 5.88 -104.89 -0.62 -0.36 16 17 C -0.06 -0.67 9.69 -39.26 -0.38 -1.05 16 18 C -0.13 -1.21 10.01 -39.57 -0.40 -1.61 16 19 C 0.08 0.84 7.31 -39.29 -0.29 0.55 16 20 F -0.13 -1.46 17.18 2.25 0.04 -1.42 16 21 C 0.07 0.80 7.30 -39.42 -0.29 0.51 16 22 F -0.13 -1.59 17.18 2.25 0.04 -1.55 16 23 C -0.10 -1.23 9.67 -39.20 -0.38 -1.61 16 24 N -0.40 -7.44 11.84 31.26 0.37 -7.07 16 25 O 0.06 1.15 11.09 16.39 0.18 1.33 16 26 C -0.02 -0.33 9.63 -39.60 -0.38 -0.71 16 27 C -0.23 -4.98 9.73 -39.28 -0.38 -5.36 16 28 H 0.29 5.72 8.29 -40.82 -0.34 5.38 16 29 H 0.12 2.86 6.16 -52.48 -0.32 2.53 16 30 H 0.10 1.93 7.92 -52.49 -0.42 1.52 16 31 H 0.16 1.71 7.87 -52.49 -0.41 1.30 16 32 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.15 1.90 7.86 -52.48 -0.41 1.49 16 34 H 0.11 2.00 7.85 -52.49 -0.41 1.59 16 35 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 328.95 15.07 4.96 4.96 Total: -1.00 -24.03 328.95 -8.12 -32.15 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -2.37 Total: 5.28 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -6.80 Total: -18.34 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.87 Total: -33.09 kcal Atomic # 8 Polarization: 1.15 SS G_CDS: 0.18 Total: 1.33 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.08 Total: -2.97 kcal Atomic # 14 Polarization: 15.72 SS G_CDS: -5.03 Total: 10.69 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -24.03 -8.12 -32.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550623761.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.089 kcal (2) G-P(sol) polarization free energy of solvation -24.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds