Wall clock time and date at job start Tue Mar 31 2020 15:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30698 * 1 3 3 Si 1.86803 * 120.00296 * 2 1 4 4 H 1.48498 * 109.47614 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46974 * 300.00181 * 3 2 1 6 6 H 1.48500 * 109.47134 * 59.99936 * 3 2 1 7 7 C 1.40153 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00773 * 197.93103 * 7 2 1 9 9 C 1.40971 * 119.99440 * 17.93422 * 7 2 1 10 10 C 1.40957 * 120.10054 * 24.69520 * 9 7 2 11 11 C 1.36213 * 119.89786 * 180.02562 * 10 9 7 12 12 C 1.40118 * 120.09913 * 0.02562 * 11 10 9 13 13 C 1.47453 * 119.89798 * 179.97438 * 12 11 10 14 14 N 1.32163 * 126.57893 * 180.02562 * 13 12 11 15 15 C 1.34827 * 105.50993 * 180.02562 * 14 13 12 16 16 C 1.48407 * 126.29898 * 179.97438 * 15 14 13 17 17 C 1.39352 * 120.08502 * 0.29257 * 16 15 14 18 18 C 1.37977 * 119.95176 * 180.25806 * 17 16 15 19 19 C 1.38517 * 120.11661 * 359.71791 * 18 17 16 20 20 F 1.35106 * 119.91360 * 180.02562 * 19 18 17 21 21 C 1.38748 * 120.17009 * 0.02562 * 19 18 17 22 22 F 1.35103 * 119.97660 * 180.02562 * 21 19 18 23 23 C 1.38176 * 120.04673 * 359.97438 * 21 19 18 24 24 N 1.30941 * 107.40400 * 0.23427 * 15 14 13 25 25 O 1.21276 * 110.35468 * 359.58426 * 24 15 14 26 26 C 1.40128 * 120.20563 * 0.25339 * 12 11 10 27 27 C 1.36211 * 120.09532 * 359.48230 * 26 12 11 28 28 H 0.96998 * 119.99954 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.05551 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.94988 * 180.02562 * 11 10 9 31 31 H 1.08000 * 120.02094 * 0.02562 * 17 16 15 32 32 H 1.07996 * 119.93581 * 179.75017 * 18 17 16 33 33 H 1.08007 * 120.05690 * 180.02562 * 23 21 19 34 34 H 1.08000 * 119.95433 * 179.72283 * 26 12 11 35 35 H 1.08001 * 120.04688 * 180.27494 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 3.7011 1.3464 -0.0006 5 1 1.8823 2.3964 -1.2125 6 1 1.8824 2.3964 1.2125 7 6 2.0078 -1.2137 -0.0005 8 1 3.0485 -1.2366 0.2874 9 6 1.3543 -2.4047 -0.3770 10 6 0.2263 -2.3557 -1.2208 11 6 -0.4024 -3.5090 -1.5816 12 6 0.0704 -4.7427 -1.1148 13 6 -0.6138 -5.9884 -1.5076 14 7 -0.2833 -7.2160 -1.1467 15 6 -1.1846 -8.0222 -1.7430 16 6 -1.2393 -9.5021 -1.6462 17 6 -0.3012 -10.1869 -0.8762 18 6 -0.3514 -11.5632 -0.7924 19 6 -1.3362 -12.2652 -1.4677 20 9 -1.3818 -13.6128 -1.3824 21 6 -2.2759 -11.5880 -2.2315 22 9 -3.2351 -12.2765 -2.8881 23 6 -2.2321 -10.2097 -2.3202 24 7 -1.9994 -7.2595 -2.4279 25 8 -1.6921 -6.0932 -2.3013 26 6 1.1880 -4.7959 -0.2711 27 6 1.8261 -3.6480 0.0905 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1392 -1.4053 -1.5808 30 1 -1.2665 -3.4725 -2.2284 31 1 0.4668 -9.6409 -0.3484 32 1 0.3782 -12.0939 -0.1988 33 1 -2.9638 -9.6824 -2.9144 34 1 1.5462 -5.7486 0.0900 35 1 2.6900 -3.6903 0.7373 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000550623761.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:27 Heat of formation + Delta-G solvation = 5.456006 kcal Electronic energy + Delta-G solvation = -25003.467805 eV Core-core repulsion = 20797.690397 eV Total energy + Delta-G solvation = -4205.777407 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.65265 -49.72602 -46.26411 -40.17873 -39.56397 -36.70175 -35.94281 -34.02848 -32.27867 -31.77746 -31.33384 -31.03165 -27.76189 -25.84220 -25.08881 -23.92660 -23.35711 -22.64203 -21.82834 -19.45427 -19.36457 -18.95311 -18.78461 -18.23018 -17.92888 -17.48026 -17.28199 -16.72629 -16.13461 -16.05724 -15.77765 -15.65666 -15.30071 -15.16286 -14.52391 -14.27602 -14.01437 -13.96050 -13.80422 -13.66871 -13.56605 -13.24938 -12.89995 -12.79936 -12.55667 -12.52095 -12.37093 -11.97584 -11.69421 -11.54536 -11.38575 -11.02017 -10.28458 -9.82269 -9.61184 -9.29457 -8.84593 -6.49249 -0.73230 -0.20819 -0.15605 0.93028 1.17052 1.34275 1.43455 1.58482 1.67804 1.93374 2.16040 2.28936 2.30322 2.63083 2.64210 2.94203 3.19667 3.45783 3.62884 3.71761 3.82928 4.17049 4.34466 4.40020 4.44926 4.52046 4.66753 4.75853 4.87403 4.92196 4.96578 5.01901 5.14119 5.16296 5.26836 5.48932 5.57008 5.79262 5.96365 5.98680 6.15980 6.49858 6.71379 6.82482 7.18865 8.08966 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.040489 B = 0.002068 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.376632 B =13535.118579 C =14143.189193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.035 3.965 3 Si 0.988 3.012 4 H -0.252 1.252 5 H -0.263 1.263 6 H -0.265 1.265 7 C -0.448 4.448 8 H 0.096 0.904 9 C 0.103 3.897 10 C -0.194 4.194 11 C -0.052 4.052 12 C -0.209 4.209 13 C 0.281 3.719 14 N -0.519 5.519 15 C 0.210 3.790 16 C -0.008 4.008 17 C -0.049 4.049 18 C -0.105 4.105 19 C 0.083 3.917 20 F -0.126 7.126 21 C 0.059 3.941 22 F -0.131 7.131 23 C -0.094 4.094 24 N -0.413 5.413 25 O 0.049 5.951 26 C -0.015 4.015 27 C -0.243 4.243 28 H 0.300 0.700 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.163 0.837 32 H 0.191 0.809 33 H 0.150 0.850 34 H 0.123 0.877 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.348 -12.855 -0.702 12.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.186 4.186 3 Si 0.808 3.192 4 H -0.175 1.175 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.475 4.475 8 H 0.114 0.886 9 C 0.099 3.901 10 C -0.213 4.213 11 C -0.072 4.072 12 C -0.214 4.214 13 C 0.072 3.928 14 N -0.254 5.254 15 C -0.061 4.061 16 C -0.010 4.010 17 C -0.069 4.069 18 C -0.124 4.124 19 C 0.062 3.938 20 F -0.105 7.105 21 C 0.039 3.961 22 F -0.110 7.110 23 C -0.115 4.115 24 N -0.130 5.130 25 O -0.004 6.004 26 C -0.035 4.035 27 C -0.262 4.262 28 H 0.111 0.889 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.181 0.819 32 H 0.208 0.792 33 H 0.168 0.832 34 H 0.141 0.859 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.358 -13.392 -0.987 13.433 hybrid contribution -0.387 0.695 -0.265 0.839 sum -0.745 -12.697 -1.253 12.780 Atomic orbital electron populations 1.69786 1.09398 1.31998 1.29894 1.27010 0.95514 1.05162 0.90872 0.85043 0.79697 0.75350 0.79148 1.17521 1.18788 1.18918 1.20276 0.99067 0.91926 1.36213 0.88597 1.18202 0.90890 0.93395 0.87663 1.20948 1.00530 0.97003 1.02836 1.20625 0.97799 0.91480 0.97258 1.16757 1.03792 0.85646 1.15231 1.26557 0.84477 0.94710 0.87020 1.72199 1.26672 0.98903 1.27614 1.23922 0.90453 0.96866 0.94840 1.17239 0.97945 0.85001 1.00851 1.21346 0.96997 0.93518 0.95071 1.21325 0.98050 0.93341 0.99645 1.17956 0.97670 0.77676 1.00504 1.91549 1.95949 1.28283 1.94710 1.17411 0.90253 0.89683 0.98746 1.91532 1.61349 1.79122 1.79002 1.20969 0.99168 0.91428 0.99927 1.74742 1.24155 0.89622 1.24455 1.85304 1.39568 1.21866 1.53657 1.20466 0.92019 0.98080 0.92941 1.20877 1.05183 0.92108 1.08051 0.88896 0.86820 0.86846 0.81931 0.79183 0.83211 0.85928 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.36 10.96 21.86 0.24 -35.12 16 2 C 0.04 1.50 5.13 85.33 0.44 1.93 16 3 Si 0.99 31.93 29.60 68.60 2.03 33.96 16 4 H -0.25 -7.93 7.11 99.48 0.71 -7.23 16 5 H -0.26 -8.30 7.11 99.48 0.71 -7.59 16 6 H -0.26 -8.28 7.11 99.48 0.71 -7.57 16 7 C -0.45 -20.43 9.03 23.40 0.21 -20.22 16 8 H 0.10 4.10 7.91 -2.91 -0.02 4.08 16 9 C 0.10 4.82 5.57 -21.28 -0.12 4.71 16 10 C -0.19 -9.04 8.63 22.46 0.19 -8.85 16 11 C -0.05 -2.22 9.65 22.25 0.21 -2.01 16 12 C -0.21 -8.78 5.89 -19.93 -0.12 -8.89 16 13 C 0.28 11.17 7.98 87.15 0.70 11.87 16 14 N -0.52 -19.13 10.92 -301.99 -3.30 -22.43 16 15 C 0.21 7.12 7.79 137.36 1.07 8.19 16 16 C -0.01 -0.22 5.88 -20.04 -0.12 -0.33 16 17 C -0.05 -0.99 9.69 22.48 0.22 -0.78 16 18 C -0.11 -1.62 10.01 22.27 0.22 -1.40 16 19 C 0.08 1.60 7.31 22.46 0.16 1.76 16 20 F -0.13 -2.51 17.18 44.97 0.77 -1.74 16 21 C 0.06 1.32 7.30 22.38 0.16 1.48 16 22 F -0.13 -3.13 17.18 44.97 0.77 -2.36 16 23 C -0.09 -2.27 9.67 22.51 0.22 -2.06 16 24 N -0.41 -15.19 11.84 -57.41 -0.68 -15.87 16 25 O 0.05 1.91 11.09 68.72 0.76 2.68 16 26 C -0.02 -0.62 9.63 22.26 0.21 -0.41 16 27 C -0.24 -10.43 9.73 22.47 0.22 -10.21 16 28 H 0.30 11.92 8.29 -92.71 -0.77 11.15 16 29 H 0.11 5.46 6.16 -2.91 -0.02 5.44 16 30 H 0.11 4.46 7.92 -2.91 -0.02 4.43 16 31 H 0.16 3.08 7.87 -2.91 -0.02 3.06 16 32 H 0.19 1.56 8.06 -2.91 -0.02 1.53 16 33 H 0.15 3.66 7.86 -2.91 -0.02 3.63 16 34 H 0.12 4.50 7.85 -2.91 -0.02 4.48 16 35 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -51.76 328.95 5.66 -46.10 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 1.17 Total: 19.99 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 3.89 Total: -25.20 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: -3.74 Total: -73.42 kcal Atomic # 8 Polarization: 1.91 SS G_CDS: 0.76 Total: 2.68 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 1.54 Total: -4.10 kcal Atomic # 14 Polarization: 31.93 SS G_CDS: 2.03 Total: 33.96 kcal Total: -51.76 5.66 -46.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550623761.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.558 kcal (2) G-P(sol) polarization free energy of solvation -51.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds