Wall clock time and date at job start Tue Mar 31 2020 15:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30704 * 1 3 3 Si 1.86797 * 119.99888 * 2 1 4 4 H 1.48508 * 109.46788 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47389 * 300.00185 * 3 2 1 6 6 H 1.48499 * 109.47218 * 60.00966 * 3 2 1 7 7 C 1.40153 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00148 * 162.21987 * 7 2 1 9 9 C 1.40962 * 119.99700 * 341.94368 * 7 2 1 10 10 C 1.40968 * 120.10110 * 335.27898 * 9 7 2 11 11 C 1.36213 * 119.89348 * 179.71400 * 10 9 7 12 12 C 1.40121 * 120.10625 * 0.56671 * 11 10 9 13 13 C 1.47446 * 119.90415 * 179.69277 * 12 11 10 14 14 N 1.32160 * 126.57563 * 0.02562 * 13 12 11 15 15 C 1.34837 * 105.50762 * 179.97438 * 14 13 12 16 16 C 1.48353 * 126.30075 * 179.97438 * 15 14 13 17 17 C 1.39363 * 120.11247 * 179.97438 * 16 15 14 18 18 C 1.37918 * 119.93164 * 179.97438 * 17 16 15 19 19 C 1.38624 * 120.15291 * 0.02562 * 18 17 16 20 20 F 1.35099 * 119.89097 * 179.97438 * 19 18 17 21 21 C 1.38469 * 120.21605 * 0.02562 * 19 18 17 22 22 C 1.38250 * 120.07211 * 359.70691 * 21 19 18 23 23 F 1.35093 * 120.07901 * 180.27626 * 22 21 19 24 24 N 1.30958 * 107.40304 * 0.02562 * 15 14 13 25 25 O 1.21281 * 110.35051 * 359.74311 * 24 15 14 26 26 C 1.40136 * 120.19607 * 359.70749 * 12 11 10 27 27 C 1.36202 * 120.10306 * 0.02562 * 26 12 11 28 28 H 0.97001 * 119.99968 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.04951 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.94546 * 180.27856 * 11 10 9 31 31 H 1.07997 * 120.03306 * 359.96000 * 17 16 15 32 32 H 1.08005 * 119.92056 * 180.02562 * 18 17 16 33 33 H 1.08000 * 119.96238 * 179.97438 * 21 19 18 34 34 H 1.08000 * 119.94407 * 180.02562 * 26 12 11 35 35 H 1.08001 * 120.05087 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7011 1.3463 -0.0006 5 1 1.8822 2.3965 -1.2124 6 1 1.8824 2.3963 1.2126 7 6 2.0078 -1.2138 -0.0005 8 1 3.0490 -1.2360 -0.2861 9 6 1.3549 -2.4046 0.3773 10 6 0.2287 -2.3555 1.2237 11 6 -0.4024 -3.5084 1.5815 12 6 0.0733 -4.7426 1.1192 13 6 -0.6093 -5.9883 1.5147 14 7 -1.6723 -6.0908 2.2933 15 6 -1.9361 -7.4108 2.3713 16 6 -3.0407 -8.0421 3.1342 17 6 -3.1949 -9.4272 3.1245 18 6 -4.2229 -10.0102 3.8355 19 6 -5.1035 -9.2216 4.5596 20 9 -6.1088 -9.7983 5.2538 21 6 -4.9567 -7.8448 4.5728 22 6 -3.9263 -7.2512 3.8678 23 9 -3.7796 -5.9084 3.8851 24 7 -1.0371 -8.0332 1.6505 25 8 -0.2728 -7.2361 1.1491 26 6 1.1960 -4.7967 0.2823 27 6 1.8301 -3.6486 -0.0850 28 1 -0.4850 0.8401 0.0004 29 1 -0.1361 -1.4049 1.5838 30 1 -1.2681 -3.4714 2.2262 31 1 -2.5103 -10.0433 2.5605 32 1 -4.3419 -11.0836 3.8281 33 1 -5.6454 -7.2343 5.1380 34 1 1.5589 -5.7502 -0.0720 35 1 2.6951 -3.6912 -0.7303 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000551466336.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:30 Heat of formation + Delta-G solvation = 7.037629 kcal Electronic energy + Delta-G solvation = -25400.595146 eV Core-core repulsion = 21194.886323 eV Total energy + Delta-G solvation = -4205.708823 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.14353 -50.07591 -46.24869 -40.01145 -39.58360 -36.74020 -35.97827 -34.05073 -32.22325 -31.67834 -31.60526 -30.92433 -27.78067 -25.73325 -25.07536 -23.88242 -23.49762 -22.46554 -21.86521 -19.45829 -19.39860 -18.96416 -18.93272 -18.21344 -17.24890 -17.20729 -17.10351 -16.77136 -16.61552 -16.40553 -15.79375 -15.56371 -15.32967 -15.11563 -14.56668 -14.09746 -14.03666 -13.84934 -13.71223 -13.58954 -13.43005 -13.25991 -12.93614 -12.82063 -12.61431 -12.55429 -12.37910 -11.94135 -11.72287 -11.56441 -11.39433 -11.04184 -10.25646 -9.79000 -9.63430 -9.30830 -8.85786 -6.51010 -0.71271 -0.16702 -0.15623 0.92927 1.14170 1.34960 1.42017 1.57653 1.67633 1.90022 2.14792 2.28794 2.40615 2.62726 2.66567 2.93221 3.19183 3.49210 3.60915 3.77711 3.94203 4.07693 4.35814 4.39002 4.51179 4.58976 4.69526 4.79432 4.84578 4.92946 4.95482 5.01038 5.03257 5.13468 5.24505 5.53609 5.54998 5.75697 5.94239 5.98324 6.12838 6.48358 6.69183 6.80576 7.18075 8.07885 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.025987 B = 0.002430 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.198066 B =11521.961078 C =12519.929141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.033 3.967 3 Si 0.990 3.010 4 H -0.250 1.250 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.447 4.447 8 H 0.099 0.901 9 C 0.102 3.898 10 C -0.197 4.197 11 C -0.036 4.036 12 C -0.210 4.210 13 C 0.279 3.721 14 N -0.529 5.529 15 C 0.205 3.795 16 C -0.085 4.085 17 C -0.023 4.023 18 C -0.146 4.146 19 C 0.151 3.849 20 F -0.123 7.123 21 C -0.189 4.189 22 C 0.151 3.849 23 F -0.126 7.126 24 N -0.404 5.404 25 O 0.054 5.946 26 C -0.031 4.031 27 C -0.237 4.237 28 H 0.299 0.701 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.162 0.838 32 H 0.187 0.813 33 H 0.173 0.827 34 H 0.129 0.871 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.436 -11.995 5.914 14.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.187 4.187 3 Si 0.809 3.191 4 H -0.173 1.173 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.474 4.474 8 H 0.117 0.883 9 C 0.098 3.902 10 C -0.217 4.217 11 C -0.057 4.057 12 C -0.215 4.215 13 C 0.070 3.930 14 N -0.264 5.264 15 C -0.065 4.065 16 C -0.088 4.088 17 C -0.043 4.043 18 C -0.164 4.164 19 C 0.131 3.869 20 F -0.101 7.101 21 C -0.209 4.209 22 C 0.129 3.871 23 F -0.104 7.104 24 N -0.120 5.120 25 O 0.000 6.000 26 C -0.051 4.051 27 C -0.257 4.257 28 H 0.111 0.889 29 H 0.129 0.871 30 H 0.119 0.881 31 H 0.180 0.820 32 H 0.204 0.796 33 H 0.191 0.809 34 H 0.147 0.853 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.981 -12.540 6.073 15.585 hybrid contribution 0.081 1.273 -0.040 1.277 sum -6.901 -11.267 6.034 14.525 Atomic orbital electron populations 1.69806 1.09538 1.32007 1.29856 1.27071 0.95505 1.05346 0.90819 0.85017 0.79729 0.75178 0.79141 1.17314 1.18806 1.18883 1.20293 0.99099 0.91836 1.36127 0.88316 1.18202 0.90753 0.93601 0.87597 1.20931 1.00850 0.96703 1.03183 1.20436 0.97251 0.91262 0.96706 1.16761 1.03802 0.85403 1.15521 1.26588 0.89593 0.87477 0.89377 1.72412 1.15590 1.15984 1.22421 1.23894 0.97201 0.86907 0.98504 1.17752 0.94493 0.94607 1.01901 1.21076 0.96854 0.90636 0.95709 1.21412 0.94165 1.02945 0.97885 1.17442 0.86704 0.89940 0.92807 1.91569 1.57659 1.84371 1.76503 1.21110 1.00294 0.95030 1.04431 1.17493 0.95150 0.77439 0.96978 1.91600 1.94963 1.29354 1.94459 1.74669 1.05709 1.15771 1.15849 1.85268 1.44497 1.14649 1.55573 1.20626 0.92394 0.98572 0.93517 1.20891 1.05097 0.91930 1.07765 0.88930 0.87051 0.88058 0.82040 0.79586 0.80925 0.85327 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.85 10.97 21.86 0.24 -36.61 16 2 C 0.03 1.46 5.13 85.33 0.44 1.90 16 3 Si 0.99 32.88 29.60 68.60 2.03 34.91 16 4 H -0.25 -8.02 7.11 99.48 0.71 -7.31 16 5 H -0.26 -8.43 7.11 99.48 0.71 -7.73 16 6 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 7 C -0.45 -20.92 9.03 23.40 0.21 -20.71 16 8 H 0.10 4.29 7.91 -2.91 -0.02 4.27 16 9 C 0.10 5.00 5.57 -21.27 -0.12 4.88 16 10 C -0.20 -9.80 8.63 22.47 0.19 -9.61 16 11 C -0.04 -1.74 9.63 22.26 0.21 -1.52 16 12 C -0.21 -9.43 5.89 -19.93 -0.12 -9.54 16 13 C 0.28 12.00 7.98 87.15 0.70 12.70 16 14 N -0.53 -22.81 9.91 -301.99 -2.99 -25.81 16 15 C 0.21 7.72 7.77 137.34 1.07 8.79 16 16 C -0.08 -2.48 5.88 -19.99 -0.12 -2.60 16 17 C -0.02 -0.47 9.69 22.46 0.22 -0.25 16 18 C -0.15 -2.14 10.01 22.29 0.22 -1.92 16 19 C 0.15 2.56 7.30 22.42 0.16 2.72 16 20 F -0.12 -1.97 17.26 44.97 0.78 -1.20 16 21 C -0.19 -3.82 9.99 22.33 0.22 -3.60 16 22 C 0.15 4.24 7.28 22.59 0.16 4.40 16 23 F -0.13 -4.33 15.79 44.97 0.71 -3.62 16 24 N -0.40 -15.11 11.84 -57.39 -0.68 -15.79 16 25 O 0.05 2.14 11.09 68.70 0.76 2.90 16 26 C -0.03 -1.30 9.66 22.26 0.21 -1.09 16 27 C -0.24 -10.43 9.73 22.46 0.22 -10.21 16 28 H 0.30 12.42 8.29 -92.71 -0.77 11.66 16 29 H 0.11 5.71 6.16 -2.91 -0.02 5.69 16 30 H 0.10 4.77 7.85 -2.91 -0.02 4.75 16 31 H 0.16 2.96 7.86 -2.91 -0.02 2.93 16 32 H 0.19 1.38 8.06 -2.91 -0.02 1.35 16 33 H 0.17 2.75 8.06 -2.91 -0.02 2.72 16 34 H 0.13 4.58 7.92 -2.91 -0.02 4.55 16 35 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -57.03 327.13 5.91 -51.12 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 1.17 Total: 19.76 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 3.89 Total: -25.67 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -3.43 Total: -78.20 kcal Atomic # 8 Polarization: 2.14 SS G_CDS: 0.76 Total: 2.90 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 1.49 Total: -4.82 kcal Atomic # 14 Polarization: 32.88 SS G_CDS: 2.03 Total: 34.91 kcal Total: -57.03 5.91 -51.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000551466336.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.156 kcal (2) G-P(sol) polarization free energy of solvation -57.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds