Wall clock time and date at job start Tue Mar 31 2020 14:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47063 * 2 1 4 4 C 1.50703 * 109.47315 * 240.00477 * 2 1 3 5 5 H 1.07997 * 119.99815 * 240.00216 * 4 2 1 6 6 C 1.37879 * 120.00081 * 59.99457 * 4 2 1 7 7 N 1.31514 * 120.00086 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99600 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47499 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47034 * 120.00641 * 8 6 4 11 11 H 1.48497 * 109.47152 * 240.00227 * 8 6 4 12 12 C 1.52994 * 109.47043 * 120.00146 * 2 1 3 13 13 S 1.81400 * 109.47431 * 299.99877 * 12 2 1 14 14 C 1.76190 * 103.00370 * 179.97438 * 13 12 2 15 15 C 1.38848 * 120.03240 * 0.02562 * 14 13 12 16 16 C 1.38622 * 120.02887 * 180.02562 * 15 14 13 17 17 C 1.39013 * 119.91030 * 359.84680 * 16 15 14 18 18 C 1.38696 * 119.95444 * 359.90104 * 17 16 15 19 19 C 1.38233 * 120.16454 * 0.47099 * 18 17 16 20 20 Cl 1.73599 * 120.00064 * 179.68886 * 19 18 17 21 21 O 1.36239 * 120.74574 * 180.24198 * 17 16 15 22 22 C 1.43165 * 116.69271 * 342.59666 * 21 17 16 23 23 C 1.53472 * 108.23292 * 46.30746 * 22 21 17 24 24 O 1.36141 * 119.32050 * 179.60160 * 16 15 14 25 25 H 1.08990 * 109.47256 * 299.99876 * 1 2 3 26 26 H 1.09007 * 109.47057 * 59.99937 * 1 2 3 27 27 H 1.08993 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47379 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47342 * 300.00137 * 3 2 1 30 30 H 1.09004 * 109.46967 * 59.99991 * 3 2 1 31 31 H 0.96993 * 119.99791 * 179.97438 * 7 6 4 32 32 H 1.09007 * 109.47227 * 179.97438 * 12 2 1 33 33 H 1.08994 * 109.47290 * 60.00211 * 12 2 1 34 34 H 1.07998 * 119.98407 * 359.97438 * 15 14 13 35 35 H 1.08001 * 119.91654 * 180.17581 * 18 17 16 36 36 H 1.09000 * 109.71520 * 165.99352 * 22 21 17 37 37 H 1.09005 * 109.71182 * 286.62803 * 22 21 17 38 38 H 1.09007 * 109.70240 * 59.92919 * 23 22 21 39 39 H 1.08997 * 109.70841 * 180.54496 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3215 -1.1202 -4.0079 9 1 3.1456 -2.2875 -3.6038 10 1 1.1661 -1.5865 -4.8162 11 1 3.1467 -0.1872 -4.8164 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1338 2.7304 14 6 2.1119 -0.8243 4.0451 15 6 2.8969 -1.9344 3.7635 16 6 3.4287 -2.6885 4.7980 17 6 3.1775 -2.3299 6.1174 18 6 2.3974 -1.2176 6.3962 19 6 1.8604 -0.4696 5.3651 20 17 0.8779 0.9171 5.7190 21 8 3.6956 -3.0560 7.1472 22 6 4.1609 -4.3734 6.8350 23 6 5.0106 -4.2929 5.5595 24 8 4.1897 -3.7788 4.5054 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 0.7095 1.1618 -3.4844 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -1.7489 1.2492 34 1 3.0926 -2.2109 2.7380 35 1 2.2050 -0.9379 7.4214 36 1 4.7672 -4.7537 7.6572 37 1 3.3100 -5.0341 6.6687 38 1 5.8577 -3.6268 5.7237 39 1 5.3701 -5.2870 5.2940 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567180915.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:49 Heat of formation + Delta-G solvation = -62.048331 kcal Electronic energy + Delta-G solvation = -23207.738398 eV Core-core repulsion = 19653.981663 eV Total energy + Delta-G solvation = -3553.756735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.36560 -38.00062 -37.41994 -36.20572 -35.99377 -31.62899 -31.36391 -30.84374 -28.52987 -26.44299 -25.67119 -25.17025 -24.91062 -23.08735 -21.29937 -19.25648 -18.85073 -17.80833 -17.45410 -16.22307 -16.01929 -15.72645 -15.20047 -14.80597 -14.70257 -14.57765 -14.26871 -13.92567 -13.78749 -13.44049 -13.12424 -12.69296 -12.50300 -12.34230 -11.81508 -11.47931 -11.34134 -11.23196 -10.98472 -10.95192 -10.76199 -10.72524 -10.61600 -10.33203 -10.13236 -9.77393 -9.58356 -9.46405 -9.11480 -8.64594 -8.42666 -8.35747 -6.88229 -6.02545 -4.14041 1.01392 1.07119 1.87191 2.16055 2.75723 2.96399 3.25585 3.27563 3.34514 3.37824 3.42578 3.96148 4.38069 4.42759 4.53510 4.61724 4.87772 5.03516 5.15182 5.22233 5.23732 5.47297 5.67563 5.86756 5.88067 5.96588 6.03975 6.16016 6.46102 6.65481 6.77898 6.92251 7.07060 7.09006 7.20267 7.35585 7.58976 7.69164 8.02613 8.13788 8.36801 8.85199 9.51605 10.98475 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014805 B = 0.003648 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.741930 B = 7673.080188 C = 9347.859381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.083 3.917 3 C -0.135 4.135 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.893 3.107 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.089 4.089 13 S -0.070 6.070 14 C -0.072 4.072 15 C -0.124 4.124 16 C 0.078 3.922 17 C 0.038 3.962 18 C -0.086 4.086 19 C -0.028 4.028 20 Cl -0.048 7.048 21 O -0.306 6.306 22 C 0.021 3.979 23 C 0.020 3.980 24 O -0.303 6.303 25 H 0.019 0.981 26 H 0.086 0.914 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.086 0.914 30 H 0.019 0.981 31 H 0.260 0.740 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.122 0.878 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.135 -7.272 18.411 20.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.081 3.919 3 C -0.193 4.193 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.237 4.237 13 S 0.180 5.820 14 C -0.186 4.186 15 C -0.149 4.149 16 C 0.031 3.969 17 C -0.010 4.010 18 C -0.107 4.107 19 C -0.062 4.062 20 Cl -0.019 7.019 21 O -0.221 6.221 22 C -0.054 4.054 23 C -0.056 4.056 24 O -0.217 6.217 25 H 0.038 0.962 26 H 0.105 0.895 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.105 0.895 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.166 0.834 35 H 0.163 0.837 36 H 0.139 0.861 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.257 -6.030 18.227 19.665 hybrid contribution 1.281 -1.817 -0.749 2.346 sum 5.538 -7.847 17.479 19.944 Atomic orbital electron populations 1.21893 0.97248 0.99349 1.00791 1.17986 0.93037 0.92503 0.88332 1.21895 0.98525 0.98063 1.00790 1.21040 1.31711 1.12141 0.89750 0.92538 1.24877 0.94841 0.94915 0.98770 1.69825 1.36436 1.22605 1.23195 0.86526 0.78651 0.79692 0.83058 1.19848 1.20999 1.20998 1.24323 1.02877 1.01950 0.94546 1.85975 1.62990 1.36882 0.96193 1.21897 1.00668 0.98806 0.97237 1.20472 1.00939 0.94237 0.99272 1.18767 0.96029 0.90072 0.92015 1.18474 1.00818 0.95961 0.85722 1.20012 0.97122 0.94172 0.99377 1.19881 1.01033 0.93448 0.91820 1.98366 1.68443 1.40381 1.94681 1.86311 1.76617 1.26941 1.32199 1.23624 0.99343 0.83274 0.99207 1.23656 0.92869 1.01738 0.87352 1.86357 1.55299 1.42054 1.37994 0.96165 0.89544 0.95438 0.95445 0.89535 0.96177 0.92955 0.90606 0.90602 0.83417 0.83740 0.86059 0.90448 0.90357 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.01 37.16 0.30 -2.87 16 2 C 0.08 1.95 0.52 -155.66 -0.08 1.87 16 3 C -0.13 -3.17 8.01 37.16 0.30 -2.87 16 4 C -0.51 -13.11 8.01 -34.44 -0.28 -13.38 16 5 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 6 C 0.07 1.78 5.15 -17.82 -0.09 1.68 16 7 N -0.88 -23.69 9.35 55.43 0.52 -23.17 16 8 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C -0.09 -1.79 3.27 37.15 0.12 -1.67 16 13 S -0.07 -1.29 17.87 -107.50 -1.92 -3.21 16 14 C -0.07 -1.18 6.11 -39.08 -0.24 -1.42 16 15 C -0.12 -1.96 9.28 -39.21 -0.36 -2.33 16 16 C 0.08 1.13 6.49 -39.15 -0.25 0.88 16 17 C 0.04 0.52 6.49 -39.13 -0.25 0.26 16 18 C -0.09 -1.15 9.73 -39.41 -0.38 -1.53 16 19 C -0.03 -0.41 6.33 -39.31 -0.25 -0.66 16 20 Cl -0.05 -0.68 27.82 -51.86 -1.44 -2.12 16 21 O -0.31 -3.53 10.42 -33.28 -0.35 -3.88 16 22 C 0.02 0.16 7.26 37.40 0.27 0.44 16 23 C 0.02 0.16 7.26 37.40 0.27 0.43 16 24 O -0.30 -3.94 10.42 -32.96 -0.34 -4.28 16 25 H 0.02 0.43 6.91 -51.93 -0.36 0.07 16 26 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 30 H 0.02 0.43 6.92 -51.93 -0.36 0.07 16 31 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 32 H 0.08 1.50 7.75 -51.92 -0.40 1.09 16 33 H 0.08 1.50 7.74 -51.93 -0.40 1.10 16 34 H 0.15 2.38 5.87 -52.49 -0.31 2.07 16 35 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 338.95 15.07 5.11 5.11 Total: -1.00 -28.11 338.95 -9.34 -37.45 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -4.96 Total: -0.22 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -0.93 Total: -21.17 kcal Atomic # 7 Polarization: -23.69 SS G_CDS: 0.52 Total: -23.17 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.69 Total: -8.16 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -1.92 Total: -3.21 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.44 Total: -2.12 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.11 -9.34 -37.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567180915.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.598 kcal (2) G-P(sol) polarization free energy of solvation -28.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds