Wall clock time and date at job start Tue Mar 31 2020 14:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47063 * 2 1 4 4 C 1.50703 * 109.47315 * 240.00477 * 2 1 3 5 5 H 1.07997 * 119.99815 * 240.00216 * 4 2 1 6 6 C 1.37879 * 120.00081 * 59.99457 * 4 2 1 7 7 N 1.31514 * 120.00086 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99600 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47499 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47034 * 120.00641 * 8 6 4 11 11 H 1.48497 * 109.47152 * 240.00227 * 8 6 4 12 12 C 1.52994 * 109.47043 * 120.00146 * 2 1 3 13 13 S 1.81400 * 109.47431 * 299.99877 * 12 2 1 14 14 C 1.76190 * 103.00370 * 179.97438 * 13 12 2 15 15 C 1.38848 * 120.03240 * 0.02562 * 14 13 12 16 16 C 1.38622 * 120.02887 * 180.02562 * 15 14 13 17 17 C 1.39013 * 119.91030 * 359.84680 * 16 15 14 18 18 C 1.38696 * 119.95444 * 359.90104 * 17 16 15 19 19 C 1.38233 * 120.16454 * 0.47099 * 18 17 16 20 20 Cl 1.73599 * 120.00064 * 179.68886 * 19 18 17 21 21 O 1.36239 * 120.74574 * 180.24198 * 17 16 15 22 22 C 1.43165 * 116.69271 * 342.59666 * 21 17 16 23 23 C 1.53472 * 108.23292 * 46.30746 * 22 21 17 24 24 O 1.36141 * 119.32050 * 179.60160 * 16 15 14 25 25 H 1.08990 * 109.47256 * 299.99876 * 1 2 3 26 26 H 1.09007 * 109.47057 * 59.99937 * 1 2 3 27 27 H 1.08993 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47379 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47342 * 300.00137 * 3 2 1 30 30 H 1.09004 * 109.46967 * 59.99991 * 3 2 1 31 31 H 0.96993 * 119.99791 * 179.97438 * 7 6 4 32 32 H 1.09007 * 109.47227 * 179.97438 * 12 2 1 33 33 H 1.08994 * 109.47290 * 60.00211 * 12 2 1 34 34 H 1.07998 * 119.98407 * 359.97438 * 15 14 13 35 35 H 1.08001 * 119.91654 * 180.17581 * 18 17 16 36 36 H 1.09000 * 109.71520 * 165.99352 * 22 21 17 37 37 H 1.09005 * 109.71182 * 286.62803 * 22 21 17 38 38 H 1.09007 * 109.70240 * 59.92919 * 23 22 21 39 39 H 1.08997 * 109.70841 * 180.54496 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3215 -1.1202 -4.0079 9 1 3.1456 -2.2875 -3.6038 10 1 1.1661 -1.5865 -4.8162 11 1 3.1467 -0.1872 -4.8164 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1338 2.7304 14 6 2.1119 -0.8243 4.0451 15 6 2.8969 -1.9344 3.7635 16 6 3.4287 -2.6885 4.7980 17 6 3.1775 -2.3299 6.1174 18 6 2.3974 -1.2176 6.3962 19 6 1.8604 -0.4696 5.3651 20 17 0.8779 0.9171 5.7190 21 8 3.6956 -3.0560 7.1472 22 6 4.1609 -4.3734 6.8350 23 6 5.0106 -4.2929 5.5595 24 8 4.1897 -3.7788 4.5054 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 0.7095 1.1618 -3.4844 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -1.7489 1.2492 34 1 3.0926 -2.2109 2.7380 35 1 2.2050 -0.9379 7.4214 36 1 4.7672 -4.7537 7.6572 37 1 3.3100 -5.0341 6.6687 38 1 5.8577 -3.6268 5.7237 39 1 5.3701 -5.2870 5.2940 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567180915.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:48 Heat of formation + Delta-G solvation = -75.463747 kcal Electronic energy + Delta-G solvation = -23208.320134 eV Core-core repulsion = 19653.981663 eV Total energy + Delta-G solvation = -3554.338471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.30598 -39.06188 -38.33653 -37.89895 -37.27922 -33.56227 -32.28802 -31.90830 -29.48318 -28.09014 -27.58164 -27.16470 -25.81966 -24.20842 -22.24487 -20.92285 -19.96966 -18.78312 -18.49780 -17.94303 -17.31312 -16.73247 -16.64057 -16.15854 -15.84740 -15.51014 -15.37048 -15.19150 -15.05764 -14.96827 -14.43664 -14.30864 -13.87400 -13.34645 -13.28605 -13.19732 -12.97841 -12.73917 -12.46715 -12.26978 -12.15492 -12.09446 -12.03811 -11.87820 -11.57710 -11.45518 -11.34098 -11.27297 -10.47917 -10.42060 -10.19927 -9.49251 -8.23692 -8.01153 -6.18646 -0.11242 -0.04922 0.52382 1.00994 1.42391 1.45440 1.51951 1.55779 1.93182 2.32161 2.34710 2.46442 3.15974 3.22288 3.56165 3.80599 3.96245 3.99094 4.18653 4.23026 4.29180 4.44721 4.46521 4.53583 4.63328 4.71616 4.75005 4.91566 4.92746 5.04583 5.09156 5.19618 5.21609 5.44892 5.64994 5.67069 5.76277 6.09193 6.19441 6.24961 6.40618 6.86047 7.49275 8.98189 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014805 B = 0.003648 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.741930 B = 7673.080188 C = 9347.859381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.075 3.925 3 C -0.124 4.124 4 C -0.523 4.523 5 H 0.052 0.948 6 C 0.026 3.974 7 N -0.903 5.903 8 Si 0.949 3.051 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.078 4.078 13 S -0.083 6.083 14 C -0.086 4.086 15 C -0.136 4.136 16 C 0.075 3.925 17 C 0.049 3.951 18 C -0.083 4.083 19 C -0.032 4.032 20 Cl -0.044 7.044 21 O -0.311 6.311 22 C 0.016 3.984 23 C 0.010 3.990 24 O -0.321 6.321 25 H 0.032 0.968 26 H 0.061 0.939 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.061 0.939 30 H 0.032 0.968 31 H 0.260 0.740 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.138 0.862 35 H 0.169 0.831 36 H 0.162 0.838 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.232 -8.831 20.500 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.074 3.926 3 C -0.182 4.182 4 C -0.563 4.563 5 H 0.070 0.930 6 C -0.174 4.174 7 N -0.541 5.541 8 Si 0.775 3.225 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.227 4.227 13 S 0.165 5.835 14 C -0.200 4.200 15 C -0.161 4.161 16 C 0.028 3.972 17 C 0.000 4.000 18 C -0.103 4.103 19 C -0.065 4.065 20 Cl -0.015 7.015 21 O -0.226 6.226 22 C -0.059 4.059 23 C -0.064 4.064 24 O -0.236 6.236 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.156 0.844 35 H 0.186 0.814 36 H 0.179 0.821 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.373 -7.617 20.339 22.374 hybrid contribution 1.034 -1.463 -1.211 2.163 sum 6.407 -9.080 19.128 22.122 Atomic orbital electron populations 1.21738 0.97432 0.98877 1.00136 1.17969 0.92903 0.92522 0.89233 1.21740 0.98163 0.98138 1.00135 1.21338 1.31691 1.12198 0.91053 0.93006 1.25526 0.95123 0.95568 1.01183 1.69951 1.37119 1.23494 1.23567 0.85653 0.78075 0.78733 0.80028 1.19493 1.20876 1.20862 1.23962 1.02625 1.01555 0.94519 1.85786 1.63993 1.37599 0.96162 1.21745 1.02058 0.99337 0.96870 1.20436 1.01554 0.94718 0.99411 1.18771 0.96067 0.90346 0.92030 1.18558 0.99794 0.95818 0.85810 1.20253 0.96396 0.93686 1.00015 1.19980 1.01188 0.93793 0.91585 1.98365 1.68366 1.40206 1.94552 1.86316 1.76195 1.28530 1.31524 1.24024 0.99968 0.81442 1.00445 1.24087 0.92352 1.03366 0.86626 1.86335 1.55549 1.41334 1.40356 0.94880 0.92006 0.95730 0.95727 0.91997 0.94892 0.93059 0.90755 0.90773 0.84433 0.81390 0.82055 0.89959 0.89812 0.82650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.92 8.01 71.98 0.58 -5.34 16 2 C 0.08 3.59 0.52 -52.93 -0.03 3.57 16 3 C -0.12 -5.91 8.01 71.98 0.58 -5.34 16 4 C -0.52 -27.46 8.01 25.60 0.21 -27.26 16 5 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 6 C 0.03 1.36 5.15 84.66 0.44 1.80 16 7 N -0.90 -49.37 9.35 21.45 0.20 -49.17 16 8 Si 0.95 42.42 29.54 68.60 2.03 44.44 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 C -0.08 -3.21 3.27 71.98 0.24 -2.98 16 13 S -0.08 -3.06 17.87 -56.49 -1.01 -4.07 16 14 C -0.09 -2.80 6.11 22.59 0.14 -2.66 16 15 C -0.14 -4.29 9.28 22.51 0.21 -4.08 16 16 C 0.08 2.08 6.49 22.55 0.15 2.23 16 17 C 0.05 1.21 6.49 22.57 0.15 1.35 16 18 C -0.08 -2.04 9.73 22.38 0.22 -1.82 16 19 C -0.03 -0.91 6.33 22.45 0.14 -0.77 16 20 Cl -0.04 -1.20 27.82 -2.72 -0.08 -1.28 16 21 O -0.31 -6.17 10.42 -84.07 -0.88 -7.05 16 22 C 0.02 0.18 7.26 72.14 0.52 0.71 16 23 C 0.01 0.13 7.26 72.14 0.52 0.66 16 24 O -0.32 -7.80 10.42 -82.94 -0.86 -8.66 16 25 H 0.03 1.45 6.91 -2.39 -0.02 1.43 16 26 H 0.06 3.26 6.07 -2.38 -0.01 3.24 16 27 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 30 H 0.03 1.44 6.92 -2.38 -0.02 1.43 16 31 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 32 H 0.07 3.00 7.75 -2.39 -0.02 2.98 16 33 H 0.07 2.99 7.74 -2.39 -0.02 2.97 16 34 H 0.14 4.53 5.87 -2.91 -0.02 4.52 16 35 H 0.17 3.27 8.06 -2.91 -0.02 3.24 16 36 H 0.16 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.16 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -60.69 338.95 4.52 -56.16 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.07 Total: 9.57 kcal Atomic # 6 Polarization: -43.99 SS G_CDS: 4.05 Total: -39.94 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.20 Total: -49.17 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -1.74 Total: -15.71 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: -3.06 SS G_CDS: -1.01 Total: -4.07 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -60.69 4.52 -56.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567180915.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.299 kcal (2) G-P(sol) polarization free energy of solvation -60.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds