Wall clock time and date at job start Tue Mar 31 2020 15:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99690 * 2 1 4 4 H 1.48495 * 109.47222 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47296 * 300.00149 * 3 2 1 6 6 H 1.48505 * 109.47015 * 60.00139 * 3 2 1 7 7 C 1.37873 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99988 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00197 * 0.02562 * 7 2 1 10 10 O 1.42901 * 110.88645 * 62.42627 * 9 7 2 11 11 C 1.55156 * 111.03828 * 186.32842 * 9 7 2 12 12 C 1.54334 * 103.02115 * 153.39678 * 11 9 7 13 13 N 1.47027 * 107.26417 * 338.14298 * 12 11 9 14 14 C 1.34781 * 125.64776 * 178.85372 * 13 12 11 15 15 O 1.21590 * 119.99851 * 179.69106 * 14 13 12 16 16 N 1.34775 * 119.99862 * 359.68410 * 14 13 12 17 17 C 1.40059 * 119.99721 * 185.31795 * 16 14 13 18 18 C 1.38865 * 120.03697 * 213.29223 * 17 16 14 19 19 C 1.38122 * 119.97397 * 179.97438 * 18 17 16 20 20 C 1.38459 * 120.05986 * 0.02562 * 19 18 17 21 21 F 1.35096 * 119.95872 * 179.97438 * 20 19 18 22 22 C 1.38563 * 120.07438 * 359.68101 * 20 19 18 23 23 Cl 1.73600 * 119.98861 * 180.32148 * 22 20 19 24 24 C 1.38243 * 120.02347 * 0.59997 * 22 20 19 25 25 C 1.47422 * 108.70420 * 358.58294 * 13 12 11 26 26 H 0.97000 * 120.00420 * 359.97438 * 1 2 3 27 27 H 0.96709 * 114.00134 * 297.57315 * 10 9 7 28 28 H 1.09000 * 110.72133 * 271.95208 * 11 9 7 29 29 H 1.08994 * 110.71842 * 35.22728 * 11 9 7 30 30 H 1.09003 * 109.99442 * 218.66597 * 12 11 9 31 31 H 1.09004 * 109.78225 * 97.49493 * 12 11 9 32 32 H 0.97004 * 120.00203 * 5.32633 * 16 14 13 33 33 H 1.07991 * 120.01650 * 359.96170 * 18 17 16 34 34 H 1.07999 * 119.96686 * 180.02562 * 19 18 17 35 35 H 1.07991 * 120.02858 * 179.70030 * 24 22 20 36 36 H 1.08997 * 110.36854 * 143.19099 * 25 13 12 37 37 H 1.08993 * 110.36824 * 265.41378 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.4617 -2.6316 -1.1832 11 6 2.2192 -3.7010 0.1608 12 6 1.3289 -4.7801 0.8125 13 7 0.2056 -4.0864 1.4597 14 6 -0.8077 -4.6797 2.1214 15 8 -1.6840 -4.0033 2.6242 16 7 -0.8497 -6.0228 2.2254 17 6 -1.9573 -6.6452 2.8148 18 6 -1.7910 -7.8160 3.5428 19 6 -2.8842 -8.4285 4.1239 20 6 -4.1458 -7.8763 3.9809 21 9 -5.2137 -8.4773 4.5497 22 6 -4.3135 -6.7049 3.2601 23 17 -5.8952 -6.0100 3.0892 24 6 -3.2225 -6.0923 2.6722 25 6 0.3746 -2.6342 1.2706 26 1 -0.4851 0.8400 0.0004 27 1 -0.2243 -1.9564 -1.2761 28 1 2.5844 -4.0342 -0.8106 29 1 3.0493 -3.4425 0.8181 30 1 1.9001 -5.3351 1.5567 31 1 0.9535 -5.4600 0.0476 32 1 -0.1127 -6.5584 1.8923 33 1 -0.8074 -8.2477 3.6543 34 1 -2.7546 -9.3388 4.6904 35 1 -3.3538 -5.1819 2.1064 36 1 -0.5929 -2.1566 1.1162 37 1 0.8803 -2.1960 2.1309 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592459197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:35 Heat of formation + Delta-G solvation = -93.691506 kcal Electronic energy + Delta-G solvation = -25348.579860 eV Core-core repulsion = 21259.530549 eV Total energy + Delta-G solvation = -4089.049311 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 3.41 seconds Orbital eigenvalues (eV) -49.01888 -40.59272 -38.93775 -37.44588 -36.61153 -34.54904 -34.26810 -32.29520 -31.14920 -30.49562 -28.98455 -27.81349 -25.22953 -23.64825 -23.09156 -22.18843 -19.85738 -19.76782 -18.36710 -17.80992 -17.24290 -17.13866 -16.53548 -15.83734 -15.39172 -15.29003 -14.98504 -14.64853 -14.43422 -14.09503 -13.75464 -13.36507 -13.34056 -13.15004 -13.01659 -12.89503 -12.25771 -11.98322 -11.73618 -11.63303 -11.52048 -11.11764 -11.07755 -10.91997 -10.71936 -10.51523 -10.30977 -10.19111 -9.86660 -9.46334 -9.07376 -8.76786 -8.48351 -8.24437 -7.84540 -6.33886 -4.43904 0.77600 0.94247 1.89718 2.72071 3.12138 3.16634 3.25922 3.28590 3.58905 3.98303 4.10187 4.23438 4.45686 4.77941 4.92447 4.98514 5.16870 5.25639 5.42133 5.49244 5.62254 5.76166 5.81049 5.88501 5.95291 6.08340 6.19945 6.38858 6.58361 6.73189 6.75277 6.76453 7.06246 7.20105 7.38052 7.68026 7.94868 8.19914 8.60152 8.76980 9.22683 9.31431 10.73200 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.021790 B = 0.002895 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.689759 B = 9669.998649 C =10511.525511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.249 3.751 10 O -0.582 6.582 11 C -0.115 4.115 12 C 0.100 3.900 13 N -0.620 5.620 14 C 0.712 3.288 15 O -0.575 6.575 16 N -0.688 5.688 17 C 0.186 3.814 18 C -0.124 4.124 19 C -0.119 4.119 20 C 0.079 3.921 21 F -0.132 7.132 22 C -0.049 4.049 23 Cl -0.048 7.048 24 C -0.089 4.089 25 C 0.112 3.888 26 H 0.270 0.730 27 H 0.382 0.618 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.408 0.592 33 H 0.141 0.859 34 H 0.147 0.853 35 H 0.160 0.840 36 H 0.088 0.912 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.687 -16.152 5.477 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.153 4.153 12 C -0.024 4.024 13 N -0.355 5.355 14 C 0.415 3.585 15 O -0.452 6.452 16 N -0.336 5.336 17 C 0.089 3.911 18 C -0.145 4.145 19 C -0.139 4.139 20 C 0.058 3.942 21 F -0.110 7.110 22 C -0.078 4.078 23 Cl -0.019 7.019 24 C -0.110 4.110 25 C -0.010 4.010 26 H 0.080 0.920 27 H 0.232 0.768 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.244 0.756 33 H 0.159 0.841 34 H 0.164 0.836 35 H 0.177 0.823 36 H 0.107 0.893 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.256 -15.933 5.730 17.242 hybrid contribution 0.139 1.100 0.101 1.113 sum -3.117 -14.833 5.831 16.240 Atomic orbital electron populations 1.69713 1.05984 1.27938 1.49323 1.25084 0.95050 0.99826 0.93257 0.86347 0.80025 0.82708 0.77821 1.19581 1.20722 1.20743 1.21468 0.93684 0.89919 1.52611 0.91413 1.19634 0.86587 0.91659 0.81309 1.86108 1.51580 1.57178 1.44229 1.22594 0.97520 0.95003 1.00205 1.22045 0.88220 0.96341 0.95754 1.48028 1.22979 1.10272 1.54232 1.15521 0.82523 0.80704 0.79782 1.90938 1.39270 1.62567 1.52438 1.42782 1.21008 1.06365 1.63423 1.17366 0.86338 0.92945 0.94463 1.20800 0.99512 0.96383 0.97784 1.20812 0.89863 1.01406 1.01805 1.17310 0.84542 0.92950 0.99429 1.91512 1.54237 1.82506 1.82762 1.20777 0.88594 0.95274 1.03120 1.98388 1.23192 1.83790 1.96563 1.21094 0.88831 1.01311 0.99760 1.23272 1.02911 0.74905 0.99886 0.91958 0.76816 0.90557 0.90274 0.92785 0.92251 0.75555 0.84103 0.83553 0.82292 0.89349 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.04 10.69 55.43 0.59 -22.45 16 2 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 3 Si 0.90 19.78 29.54 -169.99 -5.02 14.76 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -13.38 8.27 -34.45 -0.28 -13.67 16 8 H 0.07 1.66 7.79 -52.49 -0.41 1.25 16 9 C 0.25 5.66 0.87 -89.63 -0.08 5.58 16 10 O -0.58 -14.06 13.16 -35.23 -0.46 -14.53 16 11 C -0.12 -2.09 6.13 -24.89 -0.15 -2.24 16 12 C 0.10 1.54 6.16 -3.06 -0.02 1.52 16 13 N -0.62 -11.69 3.33 -176.23 -0.59 -12.28 16 14 C 0.71 13.17 8.23 -86.91 -0.72 12.46 16 15 O -0.57 -12.72 14.28 5.29 0.08 -12.65 16 16 N -0.69 -9.34 5.30 -14.21 -0.08 -9.42 16 17 C 0.19 2.43 6.28 -83.65 -0.53 1.90 16 18 C -0.12 -1.20 9.96 -39.39 -0.39 -1.59 16 19 C -0.12 -1.14 10.02 -39.54 -0.40 -1.53 16 20 C 0.08 0.95 7.27 -39.38 -0.29 0.66 16 21 F -0.13 -1.62 16.83 2.25 0.04 -1.58 16 22 C -0.05 -0.67 6.32 -39.46 -0.25 -0.92 16 23 Cl -0.05 -0.65 28.61 -51.86 -1.48 -2.14 16 24 C -0.09 -1.31 8.44 -39.37 -0.33 -1.64 16 25 C 0.11 2.53 5.38 -2.53 -0.01 2.51 16 26 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 27 H 0.38 9.56 7.57 45.56 0.34 9.91 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.08 1.35 8.03 -51.93 -0.42 0.93 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.41 4.20 7.82 -40.82 -0.32 3.88 16 33 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.16 2.75 6.41 -52.49 -0.34 2.41 16 36 H 0.09 2.28 7.33 -51.93 -0.38 1.90 16 37 H 0.06 1.44 8.03 -51.93 -0.42 1.02 16 LS Contribution 333.50 15.07 5.03 5.03 Total: -1.00 -28.63 333.50 -8.62 -37.25 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -3.18 Total: 13.26 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -3.54 Total: 4.74 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: -0.07 Total: -44.15 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.39 Total: -27.17 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.48 Total: -2.14 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.63 -8.62 -37.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592459197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.438 kcal (2) G-P(sol) polarization free energy of solvation -28.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.41 seconds