Wall clock time and date at job start Tue Mar 31 2020 15:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99690 * 2 1 4 4 H 1.48495 * 109.47222 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47296 * 300.00149 * 3 2 1 6 6 H 1.48505 * 109.47015 * 60.00139 * 3 2 1 7 7 C 1.37873 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99988 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00197 * 0.02562 * 7 2 1 10 10 O 1.42901 * 110.88645 * 62.42627 * 9 7 2 11 11 C 1.55156 * 111.03828 * 186.32842 * 9 7 2 12 12 C 1.54334 * 103.02115 * 153.39678 * 11 9 7 13 13 N 1.47027 * 107.26417 * 338.14298 * 12 11 9 14 14 C 1.34781 * 125.64776 * 178.85372 * 13 12 11 15 15 O 1.21590 * 119.99851 * 179.69106 * 14 13 12 16 16 N 1.34775 * 119.99862 * 359.68410 * 14 13 12 17 17 C 1.40059 * 119.99721 * 185.31795 * 16 14 13 18 18 C 1.38865 * 120.03697 * 213.29223 * 17 16 14 19 19 C 1.38122 * 119.97397 * 179.97438 * 18 17 16 20 20 C 1.38459 * 120.05986 * 0.02562 * 19 18 17 21 21 F 1.35096 * 119.95872 * 179.97438 * 20 19 18 22 22 C 1.38563 * 120.07438 * 359.68101 * 20 19 18 23 23 Cl 1.73600 * 119.98861 * 180.32148 * 22 20 19 24 24 C 1.38243 * 120.02347 * 0.59997 * 22 20 19 25 25 C 1.47422 * 108.70420 * 358.58294 * 13 12 11 26 26 H 0.97000 * 120.00420 * 359.97438 * 1 2 3 27 27 H 0.96709 * 114.00134 * 297.57315 * 10 9 7 28 28 H 1.09000 * 110.72133 * 271.95208 * 11 9 7 29 29 H 1.08994 * 110.71842 * 35.22728 * 11 9 7 30 30 H 1.09003 * 109.99442 * 218.66597 * 12 11 9 31 31 H 1.09004 * 109.78225 * 97.49493 * 12 11 9 32 32 H 0.97004 * 120.00203 * 5.32633 * 16 14 13 33 33 H 1.07991 * 120.01650 * 359.96170 * 18 17 16 34 34 H 1.07999 * 119.96686 * 180.02562 * 19 18 17 35 35 H 1.07991 * 120.02858 * 179.70030 * 24 22 20 36 36 H 1.08997 * 110.36854 * 143.19099 * 25 13 12 37 37 H 1.08993 * 110.36824 * 265.41378 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.4617 -2.6316 -1.1832 11 6 2.2192 -3.7010 0.1608 12 6 1.3289 -4.7801 0.8125 13 7 0.2056 -4.0864 1.4597 14 6 -0.8077 -4.6797 2.1214 15 8 -1.6840 -4.0033 2.6242 16 7 -0.8497 -6.0228 2.2254 17 6 -1.9573 -6.6452 2.8148 18 6 -1.7910 -7.8160 3.5428 19 6 -2.8842 -8.4285 4.1239 20 6 -4.1458 -7.8763 3.9809 21 9 -5.2137 -8.4773 4.5497 22 6 -4.3135 -6.7049 3.2601 23 17 -5.8952 -6.0100 3.0892 24 6 -3.2225 -6.0923 2.6722 25 6 0.3746 -2.6342 1.2706 26 1 -0.4851 0.8400 0.0004 27 1 -0.2243 -1.9564 -1.2761 28 1 2.5844 -4.0342 -0.8106 29 1 3.0493 -3.4425 0.8181 30 1 1.9001 -5.3351 1.5567 31 1 0.9535 -5.4600 0.0476 32 1 -0.1127 -6.5584 1.8923 33 1 -0.8074 -8.2477 3.6543 34 1 -2.7546 -9.3388 4.6904 35 1 -3.3538 -5.1819 2.1064 36 1 -0.5929 -2.1566 1.1162 37 1 0.8803 -2.1960 2.1309 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592459197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:32 Heat of formation + Delta-G solvation = -113.064284 kcal Electronic energy + Delta-G solvation = -25349.419926 eV Core-core repulsion = 21259.530549 eV Total energy + Delta-G solvation = -4089.889377 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -49.96536 -41.85941 -40.17376 -38.92097 -37.67439 -36.12604 -35.60841 -34.22703 -32.12762 -31.92307 -30.15518 -29.41055 -26.98495 -24.81766 -24.25567 -23.32266 -21.49237 -21.12658 -19.61040 -19.02371 -18.81370 -18.39189 -17.61198 -17.07071 -16.81656 -16.73422 -16.34160 -16.22913 -15.71056 -15.31608 -14.92399 -14.72875 -14.64945 -14.44075 -14.17941 -14.11210 -13.76744 -13.51999 -13.33944 -12.93825 -12.86748 -12.56473 -12.50840 -12.33780 -12.19897 -12.11480 -12.07647 -11.43629 -11.25775 -11.18055 -10.67223 -10.31610 -10.04021 -9.60631 -9.08085 -8.24649 -6.41444 -0.17086 0.00837 0.89087 1.39243 1.44279 1.47213 1.55310 1.90873 2.38179 2.46926 2.88052 3.02156 3.05309 3.61550 3.79158 3.94721 3.97247 4.09569 4.19192 4.29880 4.35140 4.56496 4.64409 4.75978 4.84407 4.96721 5.01368 5.07717 5.10672 5.24973 5.27668 5.38484 5.47480 5.72103 5.76593 5.98994 6.10416 6.66028 6.88393 7.27562 7.35518 7.38191 8.80362 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.021790 B = 0.002895 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.689759 B = 9669.998649 C =10511.525511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.962 3.038 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.553 4.553 8 H 0.070 0.930 9 C 0.231 3.769 10 O -0.587 6.587 11 C -0.111 4.111 12 C 0.101 3.899 13 N -0.625 5.625 14 C 0.709 3.291 15 O -0.621 6.621 16 N -0.665 5.665 17 C 0.166 3.834 18 C -0.096 4.096 19 C -0.101 4.101 20 C 0.075 3.925 21 F -0.134 7.134 22 C -0.066 4.066 23 Cl -0.061 7.061 24 C -0.112 4.112 25 C 0.128 3.872 26 H 0.268 0.732 27 H 0.372 0.628 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.428 0.572 33 H 0.187 0.813 34 H 0.189 0.811 35 H 0.123 0.877 36 H 0.044 0.956 37 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.447 -19.307 6.425 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.787 3.213 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.591 4.591 8 H 0.088 0.912 9 C 0.190 3.810 10 O -0.394 6.394 11 C -0.148 4.148 12 C -0.020 4.020 13 N -0.360 5.360 14 C 0.411 3.589 15 O -0.502 6.502 16 N -0.315 5.315 17 C 0.070 3.930 18 C -0.116 4.116 19 C -0.121 4.121 20 C 0.054 3.946 21 F -0.112 7.112 22 C -0.094 4.094 23 Cl -0.032 7.032 24 C -0.133 4.133 25 C 0.005 3.995 26 H 0.077 0.923 27 H 0.221 0.779 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.268 0.732 33 H 0.204 0.796 34 H 0.206 0.794 35 H 0.140 0.860 36 H 0.063 0.937 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.981 -19.167 6.667 20.317 hybrid contribution -0.592 2.012 -0.164 2.104 sum -1.574 -17.155 6.503 18.413 Atomic orbital electron populations 1.69842 1.07157 1.28264 1.50182 1.25813 0.95696 1.02808 0.93181 0.85446 0.79292 0.79163 0.77361 1.18609 1.20813 1.21027 1.21828 0.93996 0.91163 1.52155 0.91182 1.19889 0.87227 0.93297 0.80560 1.86099 1.51449 1.56740 1.45148 1.22599 0.97193 0.93602 1.01433 1.22263 0.86995 0.95551 0.97227 1.47906 1.24330 1.08974 1.54816 1.15682 0.81677 0.82154 0.79342 1.90915 1.40865 1.64193 1.54208 1.42385 1.21752 1.04397 1.62974 1.17613 0.85193 0.94310 0.95894 1.21222 1.01570 0.93993 0.94863 1.21301 0.88166 1.02000 1.00585 1.17568 0.85625 0.92403 0.99047 1.91511 1.54666 1.82343 1.82701 1.20863 0.87893 0.96319 1.04332 1.98374 1.23915 1.84193 1.96707 1.20869 0.90589 1.00888 1.01000 1.22721 1.00254 0.77266 0.99289 0.92275 0.77923 0.89532 0.89116 0.88169 0.90351 0.73219 0.79593 0.79373 0.85951 0.93714 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.31 10.69 21.45 0.23 -49.08 16 2 C 0.03 1.33 5.29 84.65 0.45 1.78 16 3 Si 0.96 41.07 29.54 68.60 2.03 43.10 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.55 -27.73 8.27 25.60 0.21 -27.52 16 8 H 0.07 3.39 7.79 -2.91 -0.02 3.37 16 9 C 0.23 10.57 0.87 -10.15 -0.01 10.56 16 10 O -0.59 -28.95 13.16 -148.98 -1.96 -30.91 16 11 C -0.11 -3.76 6.13 31.79 0.19 -3.57 16 12 C 0.10 2.81 6.16 86.73 0.53 3.34 16 13 N -0.62 -23.29 3.33 -829.72 -2.76 -26.05 16 14 C 0.71 26.19 8.23 179.05 1.47 27.67 16 15 O -0.62 -28.84 14.28 -4.00 -0.06 -28.90 16 16 N -0.67 -16.63 5.30 -317.13 -1.68 -18.31 16 17 C 0.17 4.01 6.28 38.11 0.24 4.25 16 18 C -0.10 -1.40 9.96 22.39 0.22 -1.18 16 19 C -0.10 -1.47 10.02 22.29 0.22 -1.24 16 20 C 0.07 1.64 7.27 22.40 0.16 1.80 16 21 F -0.13 -3.04 16.83 44.97 0.76 -2.28 16 22 C -0.07 -1.80 6.32 22.35 0.14 -1.66 16 23 Cl -0.06 -1.72 28.61 -2.72 -0.08 -1.79 16 24 C -0.11 -3.38 8.44 22.41 0.19 -3.19 16 25 C 0.13 6.00 5.38 86.86 0.47 6.47 16 26 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 27 H 0.37 19.57 7.57 -74.05 -0.56 19.01 16 28 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.09 2.86 8.03 -2.39 -0.02 2.84 16 30 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.43 7.04 7.82 -92.71 -0.72 6.32 16 33 H 0.19 1.11 8.06 -2.92 -0.02 1.08 16 34 H 0.19 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.12 4.61 6.41 -2.92 -0.02 4.59 16 36 H 0.04 2.46 7.33 -2.39 -0.02 2.44 16 37 H 0.04 2.10 8.03 -2.39 -0.02 2.08 16 Total: -1.00 -67.66 333.50 0.84 -66.82 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: -0.14 Total: 29.90 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 4.50 Total: 17.50 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -4.21 Total: -93.44 kcal Atomic # 8 Polarization: -57.79 SS G_CDS: -2.02 Total: -59.81 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.76 Total: -2.28 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.08 Total: -1.79 kcal Total: -67.66 0.84 -66.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592459197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.242 kcal (2) G-P(sol) polarization free energy of solvation -67.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds