Wall clock time and date at job start Tue Mar 31 2020 15:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47019 * 270.00292 * 3 2 1 5 5 H 1.48508 * 109.46688 * 30.00008 * 3 2 1 6 6 H 1.48500 * 109.47289 * 149.99888 * 3 2 1 7 7 C 1.37880 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99718 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46896 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46883 * 180.02562 * 10 9 7 12 12 O 1.21292 * 120.00104 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00150 * 180.02562 * 11 10 9 14 14 C 1.39981 * 119.99911 * 185.27433 * 13 11 10 15 15 C 1.39297 * 119.84644 * 33.45585 * 14 13 11 16 16 C 1.36587 * 120.49737 * 180.02562 * 15 14 13 17 17 C 1.39620 * 119.93739 * 359.97438 * 16 15 14 18 18 N 1.36113 * 133.73528 * 179.97438 * 17 16 15 19 19 C 1.29875 * 108.81661 * 180.02562 * 18 17 16 20 20 C 1.50698 * 124.85770 * 180.02562 * 19 18 17 21 21 F 1.39900 * 109.47072 * 4.99269 * 20 19 18 22 22 F 1.39902 * 109.47422 * 124.99297 * 20 19 18 23 23 F 1.39896 * 109.47121 * 244.99785 * 20 19 18 24 24 O 1.34291 * 110.29023 * 359.97438 * 19 18 17 25 25 C 1.35105 * 108.15375 * 0.02562 * 24 19 18 26 26 C 1.38553 * 119.83805 * 213.45288 * 14 13 11 27 27 H 0.96995 * 120.00070 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46791 * 59.99844 * 9 7 2 29 29 H 1.09008 * 109.47100 * 300.00303 * 9 7 2 30 30 H 1.08993 * 109.47477 * 60.00213 * 10 9 7 31 31 H 1.09000 * 109.46885 * 299.99200 * 10 9 7 32 32 H 0.96996 * 119.99806 * 5.26925 * 13 11 10 33 33 H 1.08000 * 119.75550 * 0.27159 * 15 14 13 34 34 H 1.08001 * 120.03341 * 180.02562 * 16 15 14 35 35 H 1.08002 * 120.16398 * 0.02739 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4918 -4.9671 -0.0012 12 8 0.2789 -4.9671 -0.0011 13 7 2.1657 -6.1344 -0.0008 14 6 1.4703 -7.3440 -0.1128 15 6 0.3083 -7.4073 -0.8784 16 6 -0.3810 -8.5806 -0.9964 17 6 0.0793 -9.7275 -0.3468 18 7 -0.3702 -11.0100 -0.2702 19 6 0.4406 -11.6940 0.4792 20 6 0.2841 -13.1568 0.8061 21 9 -0.7966 -13.6817 0.0894 22 9 1.4529 -13.8408 0.4550 23 9 0.0506 -13.3057 2.1774 24 8 1.4390 -10.9116 0.9202 25 6 1.2500 -9.6689 0.4250 26 6 1.9411 -8.4727 0.5384 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5566 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8720 -3.6044 0.8894 31 1 2.8719 -3.6043 -0.8906 32 1 3.1325 -6.1361 0.0771 33 1 -0.0481 -6.5231 -1.3858 34 1 -1.2808 -8.6213 -1.5923 35 1 2.8420 -8.4208 1.1317 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592689319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:14 Heat of formation + Delta-G solvation = -141.502084 kcal Electronic energy + Delta-G solvation = -26146.656312 eV Core-core repulsion = 21503.737099 eV Total energy + Delta-G solvation = -4642.919213 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.83735 -48.35707 -48.33508 -43.81390 -40.41365 -38.03525 -35.62115 -34.31524 -33.64492 -31.36460 -31.18568 -30.11693 -27.33612 -25.75053 -23.98706 -23.19143 -22.42746 -21.75706 -20.14385 -19.57167 -19.30227 -19.03039 -18.28304 -17.49085 -17.23186 -17.13744 -16.34747 -15.73941 -15.27055 -15.13680 -15.09352 -14.71799 -14.52161 -14.51143 -14.47661 -14.43699 -14.43086 -13.70619 -13.50367 -13.24010 -13.09158 -12.57318 -12.30756 -12.19542 -12.00070 -11.33698 -11.13996 -11.02161 -10.69998 -10.38000 -10.13490 -9.90023 -9.52617 -9.23233 -9.16633 -8.44085 -8.35429 -6.06848 -4.12110 -0.00655 0.87061 1.03651 1.62135 2.11824 2.70019 2.74120 2.99333 3.26772 3.32974 3.33702 3.35560 3.58051 3.60652 3.99476 4.22315 4.38177 4.56474 4.65724 4.88057 5.15326 5.28660 5.31743 5.43394 5.55658 5.71469 5.86365 5.96929 6.00526 6.09466 6.46412 6.64527 6.86164 7.31430 7.60608 7.68028 7.92567 8.16753 8.32448 8.95370 9.52423 11.03939 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.045827 B = 0.001915 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.844516 B =14620.325353 C =14880.669073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.531 4.531 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.128 4.128 11 C 0.511 3.489 12 O -0.503 6.503 13 N -0.682 5.682 14 C 0.221 3.779 15 C -0.120 4.120 16 C -0.020 4.020 17 C -0.015 4.015 18 N -0.394 5.394 19 C 0.125 3.875 20 C 0.586 3.414 21 F -0.139 7.139 22 F -0.156 7.156 23 F -0.155 7.155 24 O -0.188 6.188 25 C 0.063 3.937 26 C -0.147 4.147 27 H 0.262 0.738 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.415 0.585 33 H 0.159 0.841 34 H 0.147 0.853 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.632 -25.555 0.104 25.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.168 4.168 11 C 0.302 3.698 12 O -0.375 6.375 13 N -0.328 5.328 14 C 0.123 3.877 15 C -0.141 4.141 16 C -0.039 4.039 17 C -0.129 4.129 18 N -0.124 5.124 19 C -0.089 4.089 20 C 0.530 3.470 21 F -0.120 7.120 22 F -0.137 7.137 23 F -0.136 7.136 24 O -0.078 6.078 25 C 0.011 3.989 26 C -0.170 4.170 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.252 0.748 33 H 0.176 0.824 34 H 0.165 0.835 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.075 -25.581 -0.173 25.766 hybrid contribution 1.554 0.872 0.524 1.857 sum 4.629 -24.709 0.351 25.141 Atomic orbital electron populations 1.69981 1.06076 1.26800 1.49788 1.25025 0.94847 0.99332 0.95121 0.86570 0.79757 0.83368 0.78132 1.20607 1.21172 1.19857 1.21164 0.92960 0.90824 1.51944 0.92480 1.18943 0.93111 0.89280 0.98846 1.21960 1.00955 0.90642 1.03242 1.22040 0.88930 0.85210 0.73667 1.90719 1.14258 1.87021 1.45530 1.44147 1.11204 1.03793 1.73704 1.17550 0.92699 0.85376 0.92028 1.21043 0.95160 0.98825 0.99062 1.20025 0.99421 0.88111 0.96379 1.19728 0.96106 0.91957 1.05086 1.70380 1.25163 1.03317 1.13517 1.25311 0.88439 0.94783 1.00319 1.16019 0.75158 0.80601 0.75256 1.93323 1.54540 1.86363 1.77819 1.93311 1.48022 1.80623 1.91729 1.93318 1.94246 1.95784 1.30250 1.84435 1.44166 1.18254 1.60918 1.19877 0.97367 0.84361 0.97251 1.19355 1.04144 0.87875 1.05591 0.92811 0.95613 0.95641 0.89517 0.89366 0.74804 0.82369 0.83478 0.83653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.53 -14.14 9.11 -34.44 -0.31 -14.46 16 8 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.04 0.88 4.26 -27.88 -0.12 0.76 16 10 C -0.13 -2.23 5.64 -27.88 -0.16 -2.38 16 11 C 0.51 8.23 7.56 -10.99 -0.08 8.15 16 12 O -0.50 -10.09 13.67 5.55 0.08 -10.01 16 13 N -0.68 -7.84 5.34 -9.82 -0.05 -7.89 16 14 C 0.22 2.62 6.28 -83.63 -0.52 2.10 16 15 C -0.12 -1.51 8.57 -39.78 -0.34 -1.85 16 16 C -0.02 -0.23 10.04 -39.66 -0.40 -0.63 16 17 C -0.02 -0.19 7.24 -84.66 -0.61 -0.81 16 18 N -0.39 -5.06 11.05 -8.67 -0.10 -5.15 16 19 C 0.13 1.43 7.56 -13.11 -0.10 1.33 16 20 C 0.59 5.32 3.57 36.00 0.13 5.45 16 21 F -0.14 -1.28 17.09 2.25 0.04 -1.24 16 22 F -0.16 -1.33 17.30 2.25 0.04 -1.29 16 23 F -0.15 -1.37 17.30 2.25 0.04 -1.33 16 24 O -0.19 -2.22 10.78 3.49 0.04 -2.18 16 25 C 0.06 0.76 7.43 -38.65 -0.29 0.47 16 26 C -0.15 -1.56 9.97 -39.33 -0.39 -1.95 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 29 H 0.03 0.69 8.10 -51.92 -0.42 0.27 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.42 3.21 8.82 -40.82 -0.36 2.85 16 33 H 0.16 2.18 6.41 -52.49 -0.34 1.85 16 34 H 0.15 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 329.23 15.07 4.96 4.96 Total: -1.00 -32.09 329.23 -5.31 -37.40 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -2.77 Total: -1.23 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -3.30 Total: -2.28 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.59 Total: -38.57 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.11 Total: -12.19 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.12 Total: -3.86 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.09 -5.31 -37.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592689319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.104 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds