Wall clock time and date at job start Tue Mar 31 2020 14:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99425 * 2 1 4 4 H 1.48501 * 109.46901 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47214 * 299.99624 * 3 2 1 6 6 H 1.48496 * 109.47503 * 59.99973 * 3 2 1 7 7 C 1.37871 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99899 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00262 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.63818 * 56.85502 * 9 7 2 11 11 C 1.55158 * 110.72120 * 179.97438 * 9 7 2 12 12 C 1.54905 * 101.58002 * 153.86596 * 11 9 7 13 13 N 1.47426 * 104.83413 * 322.98725 * 12 11 9 14 14 C 1.34775 * 125.65099 * 204.09349 * 13 12 11 15 15 O 1.21274 * 120.00134 * 180.02562 * 14 13 12 16 16 C 1.50700 * 119.99976 * 0.02732 * 14 13 12 17 17 S 1.81400 * 109.47219 * 180.02562 * 16 14 13 18 18 C 1.81398 * 102.99919 * 179.97438 * 17 16 14 19 19 C 1.50701 * 109.46920 * 179.97438 * 18 17 16 20 20 C 1.33647 * 122.74952 * 90.00409 * 19 18 17 21 21 S 1.76195 * 107.92489 * 180.26157 * 20 19 18 22 22 C 1.70986 * 90.28166 * 359.65809 * 21 20 19 23 23 N 1.29024 * 110.16412 * 0.34175 * 22 21 20 24 24 C 1.47019 * 108.70166 * 24.36052 * 13 12 11 25 25 H 0.96992 * 120.00442 * 359.97438 * 1 2 3 26 26 H 0.96700 * 114.00606 * 303.13840 * 10 9 7 27 27 H 1.08998 * 111.00460 * 35.78890 * 11 9 7 28 28 H 1.08998 * 111.03208 * 271.95236 * 11 9 7 29 29 H 1.09005 * 110.36669 * 204.15084 * 12 11 9 30 30 H 1.08997 * 110.36986 * 81.83103 * 12 11 9 31 31 H 1.08993 * 109.47265 * 59.99506 * 16 14 13 32 32 H 1.09005 * 109.46891 * 300.00072 * 16 14 13 33 33 H 1.08991 * 109.47615 * 59.99844 * 18 17 16 34 34 H 1.09004 * 109.47354 * 299.99688 * 18 17 16 35 35 H 1.08002 * 126.03488 * 359.97438 * 20 19 18 36 36 H 1.07997 * 124.91249 * 180.02562 * 22 21 20 37 37 H 1.09001 * 109.88682 * 118.12751 * 24 13 12 38 38 H 1.09003 * 109.87828 * 239.29607 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 0.3666 -2.5701 -1.1195 11 6 2.2336 -3.7001 0.0005 12 6 1.3760 -4.8034 0.6690 13 7 0.5949 -4.0999 1.7027 14 6 0.0726 -4.6618 2.8108 15 8 -0.5556 -3.9839 3.5960 16 6 0.2693 -6.1326 3.0741 17 16 -0.5466 -6.5826 4.6305 18 6 -0.2051 -8.3585 4.7716 19 6 -0.8276 -8.8908 6.0366 20 6 -2.0732 -9.3730 6.0820 21 16 -2.3997 -9.8766 7.7386 22 6 -0.8253 -9.3981 8.2033 23 7 -0.1883 -8.9192 7.1886 24 6 0.4746 -2.6851 1.3213 25 1 -0.4850 0.8399 0.0004 26 1 -0.2681 -1.8420 -1.1662 27 1 3.1199 -3.4799 0.5956 28 1 2.5081 -3.9809 -1.0162 29 1 2.0169 -5.5576 1.1256 30 1 0.7108 -5.2622 -0.0625 31 1 1.3350 -6.3495 3.1461 32 1 -0.1644 -6.7091 2.2570 33 1 0.8724 -8.5201 4.8015 34 1 -0.6268 -8.8791 3.9118 35 1 -2.7602 -9.4377 5.2511 36 1 -0.4241 -9.4799 9.2026 37 1 -0.5746 -2.4282 1.1760 38 1 0.9091 -2.0541 2.0966 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592845856.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:34 Heat of formation + Delta-G solvation = -53.924904 kcal Electronic energy + Delta-G solvation = -22482.895643 eV Core-core repulsion = 18963.827623 eV Total energy + Delta-G solvation = -3519.068019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.04372 -40.75881 -38.97713 -36.14474 -34.18973 -33.06331 -32.30167 -30.88276 -29.43530 -28.77360 -26.81685 -25.77621 -24.23137 -21.49573 -20.85568 -20.31568 -19.21031 -19.12431 -18.15557 -17.60932 -17.21096 -16.92486 -16.69561 -16.43122 -15.89436 -15.64433 -15.24364 -14.85290 -14.75461 -14.73723 -14.36218 -14.13722 -13.87212 -13.73290 -13.49962 -13.43791 -13.22526 -12.90061 -12.55071 -12.39043 -12.31645 -12.26470 -12.08981 -11.24796 -11.11883 -11.04579 -10.66429 -10.65270 -10.43443 -10.30160 -9.75744 -9.64239 -8.72095 -8.29713 -6.45316 -0.34752 0.34294 0.47875 0.76427 1.38355 1.41790 1.42783 1.51961 1.52455 1.99473 2.12487 2.36189 2.97053 3.19680 3.45087 3.79864 3.94204 4.00497 4.06291 4.10645 4.20821 4.24714 4.40296 4.42049 4.45946 4.63033 4.63304 4.68027 4.99006 5.06996 5.12070 5.21718 5.36569 5.47930 5.73683 6.01395 6.55662 6.63622 6.73410 7.06590 7.26890 7.35980 8.76610 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.031550 B = 0.002172 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.257573 B =12888.322581 C =13184.308656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.023 3.977 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.285 1.285 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.232 3.768 10 O -0.589 6.589 11 C -0.113 4.113 12 C 0.103 3.897 13 N -0.611 5.611 14 C 0.526 3.474 15 O -0.584 6.584 16 C -0.101 4.101 17 S -0.236 6.236 18 C -0.015 4.015 19 C 0.054 3.946 20 C -0.242 4.242 21 S 0.170 5.830 22 C 0.015 3.985 23 N -0.498 5.498 24 C 0.119 3.881 25 H 0.271 0.729 26 H 0.378 0.622 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.198 0.802 36 H 0.228 0.772 37 H 0.028 0.972 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 -23.642 10.019 25.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.177 4.177 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.211 1.211 7 C -0.594 4.594 8 H 0.087 0.913 9 C 0.192 3.808 10 O -0.398 6.398 11 C -0.151 4.151 12 C -0.018 4.018 13 N -0.344 5.344 14 C 0.315 3.685 15 O -0.465 6.465 16 C -0.251 4.251 17 S -0.009 6.009 18 C -0.165 4.165 19 C -0.078 4.078 20 C -0.384 4.384 21 S 0.423 5.577 22 C -0.283 4.283 23 N -0.213 5.213 24 C -0.005 4.005 25 H 0.080 0.920 26 H 0.229 0.771 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.131 0.869 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.123 0.877 34 H 0.144 0.856 35 H 0.215 0.785 36 H 0.244 0.756 37 H 0.046 0.954 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.207 -23.338 11.661 26.182 hybrid contribution 0.794 1.710 -1.346 2.316 sum -1.413 -21.628 10.316 24.004 Atomic orbital electron populations 1.69682 1.07148 1.28489 1.50532 1.25839 0.95815 1.02934 0.93148 0.85414 0.79199 0.78972 0.77520 1.18749 1.20203 1.21148 1.21913 0.94041 0.91397 1.52012 0.91310 1.19727 0.86399 0.93768 0.80944 1.86053 1.51469 1.53001 1.49252 1.22762 0.97117 0.93451 1.01786 1.22590 0.94088 0.95428 0.89725 1.48754 1.52870 1.11001 1.21778 1.20132 0.78660 0.89770 0.79940 1.90701 1.43079 1.65295 1.47400 1.23408 1.07037 0.94379 1.00296 1.88109 1.73090 1.09919 1.29788 1.21889 1.04810 0.93319 0.96463 1.19544 0.92278 1.02532 0.93480 1.27239 1.00483 1.07935 1.02784 1.83905 1.15811 1.57032 1.00956 1.28921 0.95442 1.00770 1.03157 1.66076 1.38071 1.17703 0.99403 1.22566 0.99074 0.79852 0.98970 0.91986 0.77122 0.89780 0.88921 0.86863 0.90260 0.84322 0.84084 0.87721 0.85619 0.78471 0.75605 0.95368 0.94989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.33 10.97 21.45 0.24 -50.09 16 2 C 0.02 1.21 5.28 84.65 0.45 1.66 16 3 Si 0.96 42.27 29.54 68.60 2.03 44.29 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.56 -28.97 8.11 25.60 0.21 -28.77 16 8 H 0.07 3.48 7.76 -2.91 -0.02 3.46 16 9 C 0.23 11.09 0.86 -10.35 -0.01 11.08 16 10 O -0.59 -29.59 13.08 -148.98 -1.95 -31.54 16 11 C -0.11 -4.10 6.23 31.99 0.20 -3.90 16 12 C 0.10 3.07 6.68 86.85 0.58 3.65 16 13 N -0.61 -24.01 3.33 -811.78 -2.70 -26.71 16 14 C 0.53 20.28 7.87 87.66 0.69 20.97 16 15 O -0.58 -28.62 16.19 -3.01 -0.05 -28.67 16 16 C -0.10 -2.53 5.43 71.24 0.39 -2.14 16 17 S -0.24 -6.70 20.86 -56.49 -1.18 -7.87 16 18 C -0.01 -0.27 6.36 71.24 0.45 0.18 16 19 C 0.05 1.09 6.00 41.52 0.25 1.34 16 20 C -0.24 -3.78 11.13 66.78 0.74 -3.04 16 21 S 0.17 2.04 23.22 -56.49 -1.31 0.72 16 22 C 0.02 0.22 12.23 130.66 1.60 1.82 16 23 N -0.50 -10.82 10.53 -191.54 -2.02 -12.83 16 24 C 0.12 5.90 5.54 86.73 0.48 6.38 16 25 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 26 H 0.38 20.18 6.98 -74.06 -0.52 19.66 16 27 H 0.08 2.90 8.02 -2.39 -0.02 2.89 16 28 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 29 H 0.11 2.28 7.48 -2.38 -0.02 2.26 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.14 2.64 7.85 -2.39 -0.02 2.62 16 32 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.13 1.56 8.12 -2.39 -0.02 1.54 16 35 H 0.20 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.23 1.73 8.06 -2.91 -0.02 1.70 16 37 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 38 H 0.03 1.76 7.81 -2.39 -0.02 1.74 16 Total: -1.00 -73.94 349.85 -0.34 -74.29 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.57 Total: 29.20 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 6.03 Total: 9.23 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -4.48 Total: -89.64 kcal Atomic # 8 Polarization: -58.22 SS G_CDS: -2.00 Total: -60.21 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: -4.66 SS G_CDS: -2.49 Total: -7.15 kcal Total: -73.94 -0.34 -74.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845856.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.361 kcal (2) G-P(sol) polarization free energy of solvation -73.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds