Wall clock time and date at job start Tue Mar 31 2020 14:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99701 * 2 1 4 4 H 1.48506 * 109.46784 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46787 * 299.99878 * 3 2 1 6 6 H 1.48494 * 109.47483 * 60.00160 * 3 2 1 7 7 C 1.37880 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99503 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00197 * 359.97438 * 7 2 1 10 10 O 1.42898 * 110.64330 * 298.31885 * 9 7 2 11 11 C 1.55158 * 110.87456 * 175.06632 * 9 7 2 12 12 C 1.55125 * 101.48650 * 205.90199 * 11 9 7 13 13 N 1.47428 * 104.72449 * 37.29406 * 12 11 9 14 14 C 1.34777 * 125.64829 * 155.81461 * 13 12 11 15 15 O 1.21279 * 120.00166 * 179.69342 * 14 13 12 16 16 C 1.50706 * 119.99762 * 359.69548 * 14 13 12 17 17 S 1.81408 * 109.46846 * 179.97438 * 16 14 13 18 18 C 1.81394 * 102.99810 * 180.02562 * 17 16 14 19 19 C 1.50701 * 109.47203 * 179.97438 * 18 17 16 20 20 C 1.33638 * 122.75009 * 269.73416 * 19 18 17 21 21 S 1.76204 * 107.92315 * 179.97438 * 20 19 18 22 22 C 1.70971 * 90.28267 * 0.27250 * 21 20 19 23 23 N 1.29028 * 110.17205 * 359.84099 * 22 21 20 24 24 C 1.47023 * 108.70057 * 335.55423 * 13 12 11 25 25 H 0.96997 * 120.00425 * 359.97438 * 1 2 3 26 26 H 0.96698 * 114.00306 * 61.68038 * 10 9 7 27 27 H 1.09006 * 110.99917 * 324.14304 * 11 9 7 28 28 H 1.08999 * 111.00153 * 87.95123 * 11 9 7 29 29 H 1.09002 * 110.49591 * 278.45356 * 12 11 9 30 30 H 1.09002 * 110.34018 * 156.05540 * 12 11 9 31 31 H 1.09000 * 109.47318 * 299.99141 * 16 14 13 32 32 H 1.09000 * 109.47161 * 59.99772 * 16 14 13 33 33 H 1.09005 * 109.47237 * 299.99421 * 18 17 16 34 34 H 1.08997 * 109.47436 * 60.00073 * 18 17 16 35 35 H 1.08004 * 126.03565 * 0.03581 * 20 19 18 36 36 H 1.07999 * 124.91828 * 179.83402 * 22 21 20 37 37 H 1.09001 * 109.87731 * 120.70255 * 24 13 12 38 38 H 1.08997 * 109.87741 * 241.86798 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 0.4503 -2.6186 1.1769 11 6 2.2255 -3.7001 -0.1259 12 6 1.3106 -4.7743 -0.7703 13 7 0.4608 -4.0255 -1.7141 14 6 -0.1463 -4.5394 -2.8021 15 8 -0.8296 -3.8282 -3.5078 16 6 0.0239 -5.9978 -3.1417 17 16 -0.9096 -6.3805 -4.6493 18 6 -0.5869 -8.1490 -4.8911 19 6 -1.3067 -8.6268 -6.1259 20 6 -2.5521 -9.1105 -6.0950 21 16 -3.0049 -9.5477 -7.7408 22 6 -1.4717 -9.0442 -8.3055 23 7 -0.7573 -8.6077 -7.3236 24 6 0.3803 -2.6268 -1.2682 25 1 -0.4850 0.8400 0.0004 26 1 -0.2277 -1.9344 1.2626 27 1 3.0651 -3.4556 -0.7767 28 1 2.5752 -4.0234 0.8546 29 1 0.6976 -5.2591 -0.0105 30 1 1.9101 -5.5124 -1.3031 31 1 1.0803 -6.2122 -3.3038 32 1 -0.3488 -6.6083 -2.3192 33 1 0.4847 -8.3100 -5.0097 34 1 -0.9442 -8.7054 -4.0246 35 1 -3.1719 -9.2140 -5.2166 36 1 -1.1479 -9.0855 -9.3349 37 1 0.7613 -1.9669 -2.0477 38 1 -0.6533 -2.3710 -1.0353 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592845857.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:37 Heat of formation + Delta-G solvation = -30.498697 kcal Electronic energy + Delta-G solvation = -22496.143282 eV Core-core repulsion = 18978.091100 eV Total energy + Delta-G solvation = -3518.052182 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.10479 -39.41916 -37.25460 -34.34543 -32.36292 -32.25758 -30.76343 -29.45833 -28.13007 -27.61509 -25.19411 -24.87172 -22.68262 -20.08374 -19.71314 -18.99776 -18.38239 -17.24933 -16.69210 -16.40652 -16.03095 -15.70676 -15.34908 -14.98340 -14.47740 -14.25363 -14.09905 -13.82129 -13.59801 -13.31259 -13.16492 -13.00336 -12.64282 -12.49024 -12.00553 -11.75465 -11.67867 -11.43591 -11.08869 -10.86279 -10.72432 -10.48694 -10.22194 -10.10520 -10.00096 -9.79886 -9.50365 -9.36479 -9.10333 -8.71031 -8.35408 -7.98231 -7.62794 -6.31021 -4.39729 0.31708 1.03550 1.27774 1.40653 2.36801 2.76991 3.01508 3.19189 3.28335 3.31421 3.57443 3.80615 4.25483 4.58291 4.68721 4.78089 4.96224 4.97932 5.02392 5.12879 5.21547 5.31084 5.32819 5.64534 5.72112 5.74190 5.94893 6.08446 6.43929 6.68783 6.80984 6.89951 7.22127 7.33155 7.36963 7.70435 7.97069 8.11464 8.58685 8.65635 9.25494 9.34837 10.76864 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.030910 B = 0.002188 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.647383 B =12794.399696 C =13115.356054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.117 4.117 12 C 0.099 3.901 13 N -0.608 5.608 14 C 0.535 3.465 15 O -0.531 6.531 16 C -0.124 4.124 17 S -0.159 6.159 18 C -0.039 4.039 19 C 0.082 3.918 20 C -0.235 4.235 21 S 0.123 5.877 22 C 0.024 3.976 23 N -0.458 5.458 24 C 0.105 3.895 25 H 0.270 0.730 26 H 0.383 0.617 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.182 0.818 36 H 0.202 0.798 37 H 0.068 0.932 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.117 -20.561 -10.459 23.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.155 4.155 12 C -0.024 4.024 13 N -0.342 5.342 14 C 0.321 3.679 15 O -0.408 6.408 16 C -0.275 4.275 17 S 0.068 5.932 18 C -0.189 4.189 19 C -0.050 4.050 20 C -0.377 4.377 21 S 0.375 5.625 22 C -0.275 4.275 23 N -0.172 5.172 24 C -0.016 4.016 25 H 0.080 0.920 26 H 0.233 0.767 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.199 0.801 36 H 0.218 0.782 37 H 0.086 0.914 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.215 -20.125 -12.011 23.812 hybrid contribution 1.262 0.847 1.366 2.044 sum -2.953 -19.277 -10.645 22.218 Atomic orbital electron populations 1.69699 1.06001 1.27894 1.49620 1.25084 0.95064 0.99834 0.93348 0.86344 0.80052 0.82714 0.77785 1.19575 1.20743 1.20722 1.21520 0.93709 0.90025 1.52332 0.91452 1.19515 0.86517 0.92124 0.81129 1.86101 1.51839 1.56630 1.44823 1.22785 0.97383 0.95025 1.00323 1.22417 0.92874 0.95212 0.91909 1.48735 1.48120 1.13041 1.24293 1.19124 0.80453 0.87607 0.80755 1.90729 1.39591 1.60788 1.49707 1.23561 1.04530 0.99307 1.00142 1.87805 1.66377 1.06095 1.32940 1.21903 1.03481 0.97858 0.95701 1.19385 0.92037 1.01148 0.92462 1.26897 1.00169 1.09185 1.01475 1.84061 1.18747 1.59147 1.00528 1.28410 0.93977 1.01967 1.03172 1.66075 1.35953 1.16442 0.98682 1.23055 1.01855 0.77861 0.98830 0.92004 0.76701 0.90349 0.90435 0.91493 0.92019 0.87445 0.87514 0.88241 0.88423 0.80088 0.78167 0.91351 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.71 10.96 55.43 0.61 -23.10 16 2 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 3 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.54 -13.87 8.13 -34.44 -0.28 -14.15 16 8 H 0.07 1.71 7.78 -52.49 -0.41 1.30 16 9 C 0.25 5.85 0.85 -89.94 -0.08 5.77 16 10 O -0.59 -14.35 13.07 -35.23 -0.46 -14.81 16 11 C -0.12 -2.23 6.24 -24.47 -0.15 -2.39 16 12 C 0.10 1.63 6.69 -2.41 -0.02 1.62 16 13 N -0.61 -12.16 3.32 -170.38 -0.57 -12.72 16 14 C 0.54 10.46 7.87 -10.98 -0.09 10.37 16 15 O -0.53 -12.61 16.19 5.56 0.09 -12.52 16 16 C -0.12 -1.73 5.43 36.01 0.20 -1.54 16 17 S -0.16 -2.34 20.86 -107.50 -2.24 -4.58 16 18 C -0.04 -0.40 6.36 36.01 0.23 -0.18 16 19 C 0.08 0.90 6.00 -84.22 -0.51 0.39 16 20 C -0.24 -2.08 11.13 29.12 0.32 -1.75 16 21 S 0.12 0.87 23.22 -107.50 -2.50 -1.63 16 22 C 0.02 0.20 12.23 51.58 0.63 0.83 16 23 N -0.46 -5.27 10.53 -11.90 -0.13 -5.39 16 24 C 0.11 2.52 5.24 -3.06 -0.02 2.51 16 25 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 26 H 0.38 9.66 7.45 45.56 0.34 10.00 16 27 H 0.08 1.44 8.05 -51.93 -0.42 1.02 16 28 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.79 7.48 -51.93 -0.39 0.41 16 31 H 0.11 1.26 7.85 -51.92 -0.41 0.86 16 32 H 0.11 1.22 8.14 -51.92 -0.42 0.80 16 33 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 34 H 0.10 0.78 8.12 -51.93 -0.42 0.35 16 35 H 0.18 1.24 8.06 -52.48 -0.42 0.81 16 36 H 0.20 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.07 1.80 7.82 -51.93 -0.41 1.40 16 38 H 0.07 1.76 7.91 -51.93 -0.41 1.35 16 LS Contribution 349.91 15.07 5.27 5.27 Total: -1.00 -31.94 349.91 -8.98 -40.92 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -4.19 Total: 9.97 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 0.15 Total: 3.20 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: -0.08 Total: -41.21 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.37 Total: -27.33 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -4.74 Total: -6.21 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.94 -8.98 -40.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845857.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.424 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds