Wall clock time and date at job start Tue Mar 31 2020 14:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99701 * 2 1 4 4 H 1.48506 * 109.46784 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46787 * 299.99878 * 3 2 1 6 6 H 1.48494 * 109.47483 * 60.00160 * 3 2 1 7 7 C 1.37880 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99503 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00197 * 359.97438 * 7 2 1 10 10 O 1.42898 * 110.64330 * 298.31885 * 9 7 2 11 11 C 1.55158 * 110.87456 * 175.06632 * 9 7 2 12 12 C 1.55125 * 101.48650 * 205.90199 * 11 9 7 13 13 N 1.47428 * 104.72449 * 37.29406 * 12 11 9 14 14 C 1.34777 * 125.64829 * 155.81461 * 13 12 11 15 15 O 1.21279 * 120.00166 * 179.69342 * 14 13 12 16 16 C 1.50706 * 119.99762 * 359.69548 * 14 13 12 17 17 S 1.81408 * 109.46846 * 179.97438 * 16 14 13 18 18 C 1.81394 * 102.99810 * 180.02562 * 17 16 14 19 19 C 1.50701 * 109.47203 * 179.97438 * 18 17 16 20 20 C 1.33638 * 122.75009 * 269.73416 * 19 18 17 21 21 S 1.76204 * 107.92315 * 179.97438 * 20 19 18 22 22 C 1.70971 * 90.28267 * 0.27250 * 21 20 19 23 23 N 1.29028 * 110.17205 * 359.84099 * 22 21 20 24 24 C 1.47023 * 108.70057 * 335.55423 * 13 12 11 25 25 H 0.96997 * 120.00425 * 359.97438 * 1 2 3 26 26 H 0.96698 * 114.00306 * 61.68038 * 10 9 7 27 27 H 1.09006 * 110.99917 * 324.14304 * 11 9 7 28 28 H 1.08999 * 111.00153 * 87.95123 * 11 9 7 29 29 H 1.09002 * 110.49591 * 278.45356 * 12 11 9 30 30 H 1.09002 * 110.34018 * 156.05540 * 12 11 9 31 31 H 1.09000 * 109.47318 * 299.99141 * 16 14 13 32 32 H 1.09000 * 109.47161 * 59.99772 * 16 14 13 33 33 H 1.09005 * 109.47237 * 299.99421 * 18 17 16 34 34 H 1.08997 * 109.47436 * 60.00073 * 18 17 16 35 35 H 1.08004 * 126.03565 * 0.03581 * 20 19 18 36 36 H 1.07999 * 124.91828 * 179.83402 * 22 21 20 37 37 H 1.09001 * 109.87731 * 120.70255 * 24 13 12 38 38 H 1.08997 * 109.87741 * 241.86798 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 0.4503 -2.6186 1.1769 11 6 2.2255 -3.7001 -0.1259 12 6 1.3106 -4.7743 -0.7703 13 7 0.4608 -4.0255 -1.7141 14 6 -0.1463 -4.5394 -2.8021 15 8 -0.8296 -3.8282 -3.5078 16 6 0.0239 -5.9978 -3.1417 17 16 -0.9096 -6.3805 -4.6493 18 6 -0.5869 -8.1490 -4.8911 19 6 -1.3067 -8.6268 -6.1259 20 6 -2.5521 -9.1105 -6.0950 21 16 -3.0049 -9.5477 -7.7408 22 6 -1.4717 -9.0442 -8.3055 23 7 -0.7573 -8.6077 -7.3236 24 6 0.3803 -2.6268 -1.2682 25 1 -0.4850 0.8400 0.0004 26 1 -0.2277 -1.9344 1.2626 27 1 3.0651 -3.4556 -0.7767 28 1 2.5752 -4.0234 0.8546 29 1 0.6976 -5.2591 -0.0105 30 1 1.9101 -5.5124 -1.3031 31 1 1.0803 -6.2122 -3.3038 32 1 -0.3488 -6.6083 -2.3192 33 1 0.4847 -8.3100 -5.0097 34 1 -0.9442 -8.7054 -4.0246 35 1 -3.1719 -9.2140 -5.2166 36 1 -1.1479 -9.0855 -9.3349 37 1 0.7613 -1.9669 -2.0477 38 1 -0.6533 -2.3710 -1.0353 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592845857.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:36 Heat of formation + Delta-G solvation = -53.937612 kcal Electronic energy + Delta-G solvation = -22497.159670 eV Core-core repulsion = 18978.091100 eV Total energy + Delta-G solvation = -3519.068570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.03997 -40.75766 -38.97586 -36.11347 -34.24937 -33.06345 -32.28319 -30.87299 -29.40040 -28.77169 -26.81085 -25.77573 -24.23873 -21.50896 -20.85515 -20.31268 -19.17493 -19.10585 -18.14986 -17.62122 -17.21127 -16.92363 -16.68994 -16.41728 -15.90614 -15.64053 -15.26744 -14.83893 -14.75623 -14.74415 -14.36384 -14.13541 -13.86180 -13.72600 -13.51661 -13.42862 -13.21150 -12.89249 -12.53908 -12.39187 -12.34925 -12.26147 -12.08226 -11.21130 -11.12001 -11.04155 -10.67455 -10.65324 -10.43334 -10.29269 -9.75734 -9.63509 -8.72005 -8.28664 -6.44239 -0.34630 0.34411 0.47961 0.76383 1.38150 1.41636 1.42946 1.52056 1.52683 1.99756 2.12888 2.36537 2.98378 3.19790 3.45214 3.79073 3.94126 4.00724 4.06274 4.09169 4.20907 4.24317 4.40783 4.42049 4.45971 4.63041 4.63366 4.69190 5.01597 5.06962 5.12036 5.21978 5.36049 5.49622 5.72801 6.04172 6.56366 6.64818 6.73395 7.07365 7.25316 7.32952 8.77451 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.030910 B = 0.002188 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.647383 B =12794.399696 C =13115.356054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.962 3.038 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.556 4.556 8 H 0.068 0.932 9 C 0.232 3.768 10 O -0.586 6.586 11 C -0.113 4.113 12 C 0.103 3.897 13 N -0.612 5.612 14 C 0.526 3.474 15 O -0.584 6.584 16 C -0.101 4.101 17 S -0.237 6.237 18 C -0.015 4.015 19 C 0.054 3.946 20 C -0.242 4.242 21 S 0.170 5.830 22 C 0.015 3.985 23 N -0.498 5.498 24 C 0.123 3.877 25 H 0.269 0.731 26 H 0.375 0.625 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.198 0.802 36 H 0.228 0.772 37 H 0.030 0.970 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.170 -23.349 -10.570 25.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.177 4.177 3 Si 0.787 3.213 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.594 4.594 8 H 0.086 0.914 9 C 0.191 3.809 10 O -0.394 6.394 11 C -0.151 4.151 12 C -0.018 4.018 13 N -0.345 5.345 14 C 0.315 3.685 15 O -0.465 6.465 16 C -0.251 4.251 17 S -0.009 6.009 18 C -0.165 4.165 19 C -0.078 4.078 20 C -0.384 4.384 21 S 0.423 5.577 22 C -0.283 4.283 23 N -0.213 5.213 24 C -0.001 4.001 25 H 0.078 0.922 26 H 0.224 0.776 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.131 0.869 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.123 0.877 34 H 0.144 0.856 35 H 0.215 0.785 36 H 0.244 0.756 37 H 0.049 0.951 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.241 -22.955 -12.107 26.153 hybrid contribution 0.881 1.652 1.303 2.281 sum -2.361 -21.303 -10.804 24.002 Atomic orbital electron populations 1.69810 1.07113 1.28359 1.50277 1.25829 0.95803 1.02877 0.93203 0.85440 0.79235 0.79093 0.77487 1.18741 1.21188 1.20255 1.21880 0.93970 0.91405 1.52133 0.91419 1.19737 0.87091 0.93680 0.80350 1.86090 1.51714 1.56212 1.45369 1.22792 0.96920 0.93666 1.01692 1.22635 0.92476 0.94811 0.91919 1.48783 1.48856 1.11700 1.25182 1.20133 0.79011 0.89833 0.79549 1.90703 1.41708 1.62777 1.51297 1.23411 1.06314 0.94844 1.00538 1.88115 1.67355 1.11345 1.34123 1.21891 1.03966 0.93762 0.96858 1.19546 0.93047 1.02613 0.92635 1.27237 0.99802 1.08158 1.03233 1.83901 1.17238 1.57665 0.98876 1.28919 0.94519 1.00963 1.03910 1.66087 1.37570 1.18112 0.99495 1.22508 0.99382 0.80115 0.98069 0.92162 0.77625 0.89771 0.88925 0.90172 0.86901 0.84349 0.84065 0.87722 0.85615 0.78456 0.75613 0.95139 0.95157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.40 10.96 21.45 0.24 -50.17 16 2 C 0.02 1.25 5.28 84.65 0.45 1.70 16 3 Si 0.96 42.43 29.54 68.60 2.03 44.46 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.56 -29.03 8.13 25.60 0.21 -28.82 16 8 H 0.07 3.44 7.78 -2.91 -0.02 3.42 16 9 C 0.23 11.03 0.85 -10.35 -0.01 11.02 16 10 O -0.59 -29.07 13.07 -148.98 -1.95 -31.02 16 11 C -0.11 -4.07 6.24 32.06 0.20 -3.87 16 12 C 0.10 3.05 6.69 86.93 0.58 3.64 16 13 N -0.61 -24.06 3.32 -811.34 -2.70 -26.76 16 14 C 0.53 20.32 7.87 87.66 0.69 21.01 16 15 O -0.58 -28.74 16.19 -3.03 -0.05 -28.79 16 16 C -0.10 -2.53 5.43 71.24 0.39 -2.15 16 17 S -0.24 -6.73 20.86 -56.49 -1.18 -7.90 16 18 C -0.01 -0.27 6.36 71.24 0.45 0.18 16 19 C 0.05 1.09 6.00 41.52 0.25 1.34 16 20 C -0.24 -3.78 11.13 66.78 0.74 -3.04 16 21 S 0.17 2.04 23.22 -56.49 -1.31 0.73 16 22 C 0.01 0.22 12.23 130.65 1.60 1.82 16 23 N -0.50 -10.85 10.53 -191.55 -2.02 -12.86 16 24 C 0.12 6.09 5.24 86.73 0.45 6.54 16 25 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 26 H 0.37 19.61 7.45 -74.06 -0.55 19.06 16 27 H 0.08 2.92 8.05 -2.38 -0.02 2.90 16 28 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 29 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.11 2.26 7.48 -2.39 -0.02 2.25 16 31 H 0.14 2.65 7.85 -2.39 -0.02 2.63 16 32 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.79 16 34 H 0.13 1.56 8.12 -2.39 -0.02 1.54 16 35 H 0.20 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.23 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.03 1.70 7.82 -2.39 -0.02 1.68 16 38 H 0.03 1.68 7.91 -2.39 -0.02 1.66 16 Total: -1.00 -74.18 349.91 -0.40 -74.58 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.54 Total: 28.38 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 6.00 Total: 9.36 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -4.48 Total: -89.79 kcal Atomic # 8 Polarization: -57.81 SS G_CDS: -2.00 Total: -59.81 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: -4.68 SS G_CDS: -2.49 Total: -7.17 kcal Total: -74.18 -0.40 -74.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845857.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.639 kcal (2) G-P(sol) polarization free energy of solvation -74.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds