Wall clock time and date at job start Tue Mar 31 2020 15:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99535 * 2 1 4 4 H 1.48492 * 109.47248 * 272.50877 * 3 2 1 5 5 H 1.48496 * 109.47047 * 32.51063 * 3 2 1 6 6 H 1.48507 * 109.46874 * 152.50623 * 3 2 1 7 7 C 1.37880 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99900 * 5.99002 * 7 2 1 9 9 C 1.50699 * 119.99581 * 185.98976 * 7 2 1 10 10 O 1.42898 * 110.64263 * 57.54324 * 9 7 2 11 11 C 1.55156 * 110.72118 * 294.39901 * 9 7 2 12 12 C 1.54912 * 101.58048 * 205.96174 * 11 9 7 13 13 N 1.47427 * 104.83402 * 37.00966 * 12 11 9 14 14 C 1.34770 * 125.64805 * 155.91019 * 13 12 11 15 15 O 1.21600 * 119.99999 * 185.10675 * 14 13 12 16 16 C 1.47442 * 120.00129 * 5.10330 * 14 13 12 17 17 C 1.39800 * 120.18786 * 40.93415 * 16 14 13 18 18 C 1.37814 * 119.94589 * 179.69801 * 17 16 14 19 19 Cl 1.73606 * 119.82653 * 180.29736 * 18 17 16 20 20 C 1.38722 * 120.34428 * 0.57621 * 18 17 16 21 21 C 1.38094 * 120.38613 * 359.72485 * 20 18 17 22 22 F 1.35101 * 119.98092 * 180.02562 * 21 20 18 23 23 C 1.39153 * 120.04377 * 359.96861 * 21 20 18 24 24 N 1.39070 * 120.17269 * 180.02562 * 23 21 20 25 25 C 1.47022 * 108.69974 * 335.87302 * 13 12 11 26 26 H 0.96993 * 120.00262 * 0.02562 * 1 2 3 27 27 H 0.96701 * 114.00029 * 56.85531 * 10 9 7 28 28 H 1.09000 * 111.00265 * 324.03394 * 11 9 7 29 29 H 1.09001 * 111.00266 * 87.84863 * 11 9 7 30 30 H 1.09005 * 110.36530 * 155.84749 * 12 11 9 31 31 H 1.08996 * 110.36436 * 278.16801 * 12 11 9 32 32 H 1.07995 * 120.02279 * 359.97099 * 17 16 14 33 33 H 1.08001 * 119.80932 * 179.73937 * 20 18 17 34 34 H 0.97002 * 119.99886 * 176.39958 * 24 23 21 35 35 H 0.96999 * 120.00400 * 356.40190 * 24 23 21 36 36 H 1.09000 * 109.87821 * 241.63969 * 25 13 12 37 37 H 1.08996 * 109.88059 * 120.47896 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4434 2.0772 -1.3986 5 1 1.4740 2.6368 0.7525 6 1 3.5722 1.4256 0.6464 7 6 2.0046 -1.1941 0.0005 8 1 1.4690 -2.1269 -0.0967 9 6 3.5054 -1.1974 0.1367 10 8 3.9034 -0.5402 1.3416 11 6 4.1701 -0.5316 -1.0971 12 6 5.5613 -1.2129 -1.1063 13 7 5.3036 -2.6031 -0.6887 14 6 6.0812 -3.6660 -0.9745 15 8 5.7235 -4.7840 -0.6569 16 6 7.3657 -3.4735 -1.6724 17 6 8.1956 -2.4006 -1.3339 18 6 9.3980 -2.2289 -1.9851 19 17 10.4298 -0.9000 -1.5570 20 6 9.7855 -3.1091 -2.9849 21 6 8.9737 -4.1700 -3.3347 22 9 9.3593 -5.0226 -4.3093 23 6 7.7591 -4.3623 -2.6834 24 7 6.9397 -5.4301 -3.0332 25 6 4.0583 -2.6375 0.0920 26 1 -0.4850 0.8400 -0.0004 27 1 3.5153 -0.9183 2.1425 28 1 3.6176 -0.7590 -2.0087 29 1 4.2627 0.5455 -0.9572 30 1 5.9878 -1.1909 -2.1092 31 1 6.2289 -0.7216 -0.3985 32 1 7.8968 -1.7095 -0.5597 33 1 10.7277 -2.9640 -3.4925 34 1 6.1187 -5.5924 -2.5427 35 1 7.1891 -6.0126 -3.7676 36 1 4.2646 -2.9870 1.1037 37 1 3.3366 -3.2969 -0.3902 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592851286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:41 Heat of formation + Delta-G solvation = -94.273487 kcal Electronic energy + Delta-G solvation = -25936.447813 eV Core-core repulsion = 21847.373266 eV Total energy + Delta-G solvation = -4089.074547 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.13460 -40.54444 -38.83470 -37.58144 -36.64594 -35.01622 -34.40444 -32.47812 -31.56117 -30.16634 -28.82855 -28.40683 -25.74973 -24.07782 -22.59295 -22.46414 -20.14724 -19.61380 -18.22908 -17.72882 -17.49498 -17.37099 -16.37045 -15.97620 -15.54169 -15.41044 -15.34543 -15.10325 -14.83834 -14.57638 -13.84781 -13.63338 -13.40295 -13.18662 -12.98177 -12.76344 -12.41793 -12.37225 -12.24306 -12.12532 -11.67373 -11.42355 -11.23866 -11.18896 -10.70591 -10.53918 -10.36110 -10.14096 -9.80224 -9.24920 -9.07816 -8.80326 -8.56132 -8.33642 -7.83031 -6.28603 -4.41151 0.53499 0.92249 1.89201 2.61416 3.06488 3.25267 3.37908 3.38780 3.48499 3.55016 3.94164 4.29350 4.35800 4.57460 4.70760 4.96119 5.01464 5.07860 5.27212 5.33489 5.47410 5.51571 5.58617 5.70010 5.77009 5.83774 5.98177 6.22546 6.35560 6.46869 6.53500 6.58541 7.00841 7.05002 7.37327 7.41001 7.74407 8.10452 8.22862 8.66156 8.81810 9.33776 10.81562 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016322 B = 0.003847 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.111786 B = 7276.910160 C = 8349.111941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.090 3.910 3 Si 0.869 3.131 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.220 1.220 7 C -0.555 4.555 8 H 0.079 0.921 9 C 0.218 3.782 10 O -0.572 6.572 11 C -0.127 4.127 12 C 0.096 3.904 13 N -0.597 5.597 14 C 0.578 3.422 15 O -0.550 6.550 16 C -0.176 4.176 17 C -0.031 4.031 18 C -0.080 4.080 19 Cl -0.062 7.062 20 C -0.073 4.073 21 C 0.017 3.983 22 F -0.135 7.135 23 C 0.252 3.748 24 N -0.847 5.847 25 C 0.095 3.905 26 H 0.268 0.732 27 H 0.367 0.633 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.418 0.582 35 H 0.403 0.597 36 H 0.062 0.938 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.739 -4.335 -5.859 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.116 4.116 3 Si 0.696 3.304 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.142 1.142 7 C -0.592 4.592 8 H 0.097 0.903 9 C 0.178 3.822 10 O -0.379 6.379 11 C -0.165 4.165 12 C -0.026 4.026 13 N -0.328 5.328 14 C 0.367 3.633 15 O -0.430 6.430 16 C -0.185 4.185 17 C -0.051 4.051 18 C -0.109 4.109 19 Cl -0.033 7.033 20 C -0.094 4.094 21 C -0.007 4.007 22 F -0.114 7.114 23 C 0.139 3.861 24 N -0.387 5.387 25 C -0.027 4.027 26 H 0.077 0.923 27 H 0.214 0.786 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.165 0.835 33 H 0.166 0.834 34 H 0.254 0.746 35 H 0.232 0.768 36 H 0.080 0.920 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 18.818 -4.448 -6.098 20.275 hybrid contribution -0.088 0.263 0.008 0.278 sum 18.730 -4.185 -6.090 20.135 Atomic orbital electron populations 1.69934 1.06735 1.27715 1.47640 1.24944 0.94571 0.99716 0.92358 0.87149 0.82866 0.82179 0.78168 1.21230 1.22445 1.14232 1.21188 0.88475 0.95336 1.54217 0.90330 1.19939 0.93872 0.85479 0.82953 1.86507 1.74163 1.60621 1.16563 1.23159 0.93309 1.00042 0.99968 1.22569 0.99358 0.81375 0.99319 1.48473 1.24532 1.07532 1.52225 1.17443 0.82884 0.83839 0.79153 1.90724 1.73871 1.23234 1.55170 1.19090 0.98284 0.98689 1.02484 1.21167 0.91216 0.95080 0.97633 1.20045 0.94598 0.94660 1.01629 1.98373 1.66828 1.45493 1.92649 1.20823 0.99954 0.92231 0.96361 1.16631 0.94831 0.94409 0.94815 1.91475 1.90914 1.68918 1.60049 1.17616 0.88721 0.88133 0.91649 1.42688 1.26739 1.30027 1.39220 1.22884 0.83873 1.01133 0.94767 0.92278 0.78558 0.89347 0.90288 0.91120 0.91115 0.83486 0.83448 0.74647 0.76761 0.91961 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.41 13.96 55.43 0.77 -24.64 16 2 C 0.09 2.39 5.46 -17.82 -0.10 2.29 16 3 Si 0.87 20.06 24.36 -169.99 -4.14 15.92 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.22 -4.83 4.95 56.52 0.28 -4.55 16 7 C -0.55 -14.10 8.79 -34.44 -0.30 -14.40 16 8 H 0.08 2.20 7.79 -52.49 -0.41 1.79 16 9 C 0.22 4.54 0.69 -89.94 -0.06 4.48 16 10 O -0.57 -11.54 10.15 -35.23 -0.36 -11.90 16 11 C -0.13 -2.39 4.97 -24.58 -0.12 -2.52 16 12 C 0.10 1.49 5.29 -2.53 -0.01 1.48 16 13 N -0.60 -10.13 3.33 -171.78 -0.57 -10.70 16 14 C 0.58 9.54 7.10 -12.51 -0.09 9.45 16 15 O -0.55 -10.29 15.29 5.28 0.08 -10.21 16 16 C -0.18 -2.40 5.31 -104.81 -0.56 -2.96 16 17 C -0.03 -0.37 8.03 -39.15 -0.31 -0.69 16 18 C -0.08 -0.86 6.31 -39.56 -0.25 -1.11 16 19 Cl -0.06 -0.62 28.94 -51.86 -1.50 -2.12 16 20 C -0.07 -0.73 9.78 -39.46 -0.39 -1.11 16 21 C 0.02 0.19 7.30 -39.29 -0.29 -0.09 16 22 F -0.13 -1.45 16.64 2.25 0.04 -1.41 16 23 C 0.25 3.14 6.74 -83.48 -0.56 2.57 16 24 N -0.85 -9.69 8.92 32.60 0.29 -9.40 16 25 C 0.10 1.83 6.23 -3.06 -0.02 1.81 16 26 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 27 H 0.37 6.54 9.07 45.56 0.41 6.95 16 28 H 0.09 1.70 8.04 -51.93 -0.42 1.28 16 29 H 0.08 1.51 5.00 -51.93 -0.26 1.25 16 30 H 0.07 0.95 7.41 -51.93 -0.38 0.57 16 31 H 0.07 1.02 7.05 -51.93 -0.37 0.66 16 32 H 0.15 1.70 6.21 -52.49 -0.33 1.38 16 33 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.42 5.39 6.32 -40.82 -0.26 5.13 16 35 H 0.40 3.62 8.31 -40.82 -0.34 3.28 16 36 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 37 H 0.08 1.58 7.65 -51.93 -0.40 1.18 16 LS Contribution 320.03 15.07 4.82 4.82 Total: -1.00 -29.46 320.03 -6.47 -35.92 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -2.84 Total: 14.50 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -3.06 Total: -0.79 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.49 Total: -44.74 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.28 Total: -22.11 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.14 Total: 15.92 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.46 -6.47 -35.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592851286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.349 kcal (2) G-P(sol) polarization free energy of solvation -29.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds