Wall clock time and date at job start Tue Mar 31 2020 15:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99535 * 2 1 4 4 H 1.48492 * 109.47248 * 272.50877 * 3 2 1 5 5 H 1.48496 * 109.47047 * 32.51063 * 3 2 1 6 6 H 1.48507 * 109.46874 * 152.50623 * 3 2 1 7 7 C 1.37880 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99900 * 5.99002 * 7 2 1 9 9 C 1.50699 * 119.99581 * 185.98976 * 7 2 1 10 10 O 1.42898 * 110.64263 * 57.54324 * 9 7 2 11 11 C 1.55156 * 110.72118 * 294.39901 * 9 7 2 12 12 C 1.54912 * 101.58048 * 205.96174 * 11 9 7 13 13 N 1.47427 * 104.83402 * 37.00966 * 12 11 9 14 14 C 1.34770 * 125.64805 * 155.91019 * 13 12 11 15 15 O 1.21600 * 119.99999 * 185.10675 * 14 13 12 16 16 C 1.47442 * 120.00129 * 5.10330 * 14 13 12 17 17 C 1.39800 * 120.18786 * 40.93415 * 16 14 13 18 18 C 1.37814 * 119.94589 * 179.69801 * 17 16 14 19 19 Cl 1.73606 * 119.82653 * 180.29736 * 18 17 16 20 20 C 1.38722 * 120.34428 * 0.57621 * 18 17 16 21 21 C 1.38094 * 120.38613 * 359.72485 * 20 18 17 22 22 F 1.35101 * 119.98092 * 180.02562 * 21 20 18 23 23 C 1.39153 * 120.04377 * 359.96861 * 21 20 18 24 24 N 1.39070 * 120.17269 * 180.02562 * 23 21 20 25 25 C 1.47022 * 108.69974 * 335.87302 * 13 12 11 26 26 H 0.96993 * 120.00262 * 0.02562 * 1 2 3 27 27 H 0.96701 * 114.00029 * 56.85531 * 10 9 7 28 28 H 1.09000 * 111.00265 * 324.03394 * 11 9 7 29 29 H 1.09001 * 111.00266 * 87.84863 * 11 9 7 30 30 H 1.09005 * 110.36530 * 155.84749 * 12 11 9 31 31 H 1.08996 * 110.36436 * 278.16801 * 12 11 9 32 32 H 1.07995 * 120.02279 * 359.97099 * 17 16 14 33 33 H 1.08001 * 119.80932 * 179.73937 * 20 18 17 34 34 H 0.97002 * 119.99886 * 176.39958 * 24 23 21 35 35 H 0.96999 * 120.00400 * 356.40190 * 24 23 21 36 36 H 1.09000 * 109.87821 * 241.63969 * 25 13 12 37 37 H 1.08996 * 109.88059 * 120.47896 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4434 2.0772 -1.3986 5 1 1.4740 2.6368 0.7525 6 1 3.5722 1.4256 0.6464 7 6 2.0046 -1.1941 0.0005 8 1 1.4690 -2.1269 -0.0967 9 6 3.5054 -1.1974 0.1367 10 8 3.9034 -0.5402 1.3416 11 6 4.1701 -0.5316 -1.0971 12 6 5.5613 -1.2129 -1.1063 13 7 5.3036 -2.6031 -0.6887 14 6 6.0812 -3.6660 -0.9745 15 8 5.7235 -4.7840 -0.6569 16 6 7.3657 -3.4735 -1.6724 17 6 8.1956 -2.4006 -1.3339 18 6 9.3980 -2.2289 -1.9851 19 17 10.4298 -0.9000 -1.5570 20 6 9.7855 -3.1091 -2.9849 21 6 8.9737 -4.1700 -3.3347 22 9 9.3593 -5.0226 -4.3093 23 6 7.7591 -4.3623 -2.6834 24 7 6.9397 -5.4301 -3.0332 25 6 4.0583 -2.6375 0.0920 26 1 -0.4850 0.8400 -0.0004 27 1 3.5153 -0.9183 2.1425 28 1 3.6176 -0.7590 -2.0087 29 1 4.2627 0.5455 -0.9572 30 1 5.9878 -1.1909 -2.1092 31 1 6.2289 -0.7216 -0.3985 32 1 7.8968 -1.7095 -0.5597 33 1 10.7277 -2.9640 -3.4925 34 1 6.1187 -5.5924 -2.5427 35 1 7.1891 -6.0126 -3.7676 36 1 4.2646 -2.9870 1.1037 37 1 3.3366 -3.2969 -0.3902 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592851286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:40 Heat of formation + Delta-G solvation = -116.410729 kcal Electronic energy + Delta-G solvation = -25937.407756 eV Core-core repulsion = 21847.373266 eV Total energy + Delta-G solvation = -4090.034490 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.97254 -41.72212 -40.04814 -38.90048 -37.50218 -36.37181 -35.45172 -34.47751 -32.69950 -31.52640 -29.95051 -29.72111 -27.37411 -25.32757 -23.82148 -23.47380 -21.64184 -20.96840 -19.56219 -19.11833 -18.56156 -18.31637 -17.55378 -17.12834 -16.84135 -16.64116 -16.44165 -16.29007 -16.21145 -15.96873 -15.06847 -14.92513 -14.76646 -14.50114 -14.28247 -14.10234 -13.98376 -13.49946 -13.26400 -13.16552 -13.07368 -12.98555 -12.78513 -12.40672 -12.16608 -12.01777 -11.75387 -11.37197 -11.14555 -10.94761 -10.76128 -10.29475 -10.14173 -9.71998 -8.72510 -8.35467 -6.51250 -0.37549 0.05033 1.07406 1.41459 1.46535 1.50314 1.71912 1.84175 2.37859 2.42092 2.59169 2.99485 3.00948 3.31671 3.54785 3.61939 3.84387 3.88046 4.01452 4.13562 4.23731 4.40785 4.48368 4.56607 4.60881 4.72626 4.79072 4.92747 4.98326 5.07735 5.09183 5.38292 5.44903 5.51284 6.06180 6.10107 6.38592 6.58921 6.59785 6.93549 7.12950 7.30549 8.78673 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016322 B = 0.003847 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.111786 B = 7276.910160 C = 8349.111941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.038 3.962 3 Si 0.932 3.068 4 H -0.276 1.276 5 H -0.308 1.308 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.035 0.965 9 C 0.220 3.780 10 O -0.569 6.569 11 C -0.130 4.130 12 C 0.105 3.895 13 N -0.599 5.599 14 C 0.579 3.421 15 O -0.579 6.579 16 C -0.194 4.194 17 C -0.027 4.027 18 C -0.079 4.079 19 Cl -0.051 7.051 20 C -0.057 4.057 21 C 0.017 3.983 22 F -0.133 7.133 23 C 0.245 3.755 24 N -0.846 5.846 25 C 0.104 3.896 26 H 0.268 0.732 27 H 0.377 0.623 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.153 0.847 33 H 0.174 0.826 34 H 0.412 0.588 35 H 0.413 0.587 36 H 0.065 0.935 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.382 -3.115 -6.576 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.163 4.163 3 Si 0.757 3.243 4 H -0.203 1.203 5 H -0.236 1.236 6 H -0.118 1.118 7 C -0.592 4.592 8 H 0.053 0.947 9 C 0.179 3.821 10 O -0.377 6.377 11 C -0.168 4.168 12 C -0.016 4.016 13 N -0.330 5.330 14 C 0.370 3.630 15 O -0.461 6.461 16 C -0.203 4.203 17 C -0.047 4.047 18 C -0.108 4.108 19 Cl -0.022 7.022 20 C -0.077 4.077 21 C -0.008 4.008 22 F -0.111 7.111 23 C 0.131 3.869 24 N -0.385 5.385 25 C -0.019 4.019 26 H 0.077 0.923 27 H 0.226 0.774 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.170 0.830 33 H 0.192 0.808 34 H 0.245 0.755 35 H 0.244 0.756 36 H 0.083 0.917 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 22.503 -3.244 -6.833 23.740 hybrid contribution -1.219 -0.239 0.229 1.263 sum 21.284 -3.483 -6.604 22.556 Atomic orbital electron populations 1.70075 1.08708 1.28546 1.50204 1.25775 0.95083 1.03352 0.92068 0.86198 0.82227 0.77347 0.78561 1.20265 1.23638 1.11799 1.21437 0.91250 0.93528 1.52946 0.94661 1.19748 0.91143 0.87051 0.84148 1.86448 1.73885 1.60642 1.16695 1.23102 0.95113 1.00450 0.98161 1.22628 0.97519 0.79976 1.01526 1.48447 1.23755 1.08563 1.52243 1.17881 0.83540 0.83060 0.78566 1.90706 1.74801 1.24366 1.56259 1.18802 0.97364 1.00447 1.03699 1.21180 0.91395 0.94472 0.97626 1.20042 0.94293 0.95015 1.01446 1.98385 1.66332 1.44897 1.92587 1.21093 1.00355 0.90873 0.95405 1.16634 0.94477 0.94819 0.94835 1.91487 1.90797 1.68941 1.59906 1.17767 0.89333 0.88065 0.91703 1.42701 1.26346 1.30119 1.39377 1.22535 0.84711 0.99582 0.95120 0.92337 0.77403 0.90296 0.89764 0.88430 0.89054 0.82990 0.80844 0.75513 0.75578 0.91711 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.70 13.96 21.45 0.30 -55.40 16 2 C 0.04 2.04 5.46 84.66 0.46 2.50 16 3 Si 0.93 41.06 24.36 68.60 1.67 42.73 16 4 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.31 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.20 -7.85 4.95 99.48 0.49 -7.36 16 7 C -0.55 -28.97 8.79 25.60 0.22 -28.75 16 8 H 0.04 2.10 7.79 -2.91 -0.02 2.07 16 9 C 0.22 9.03 0.69 -10.35 -0.01 9.02 16 10 O -0.57 -21.83 10.15 -148.98 -1.51 -23.34 16 11 C -0.13 -4.66 4.97 31.99 0.16 -4.50 16 12 C 0.11 2.95 5.29 86.86 0.46 3.41 16 13 N -0.60 -19.60 3.33 -815.65 -2.71 -22.31 16 14 C 0.58 18.56 7.10 86.67 0.61 19.17 16 15 O -0.58 -21.76 15.29 -4.03 -0.06 -21.82 16 16 C -0.19 -4.90 5.31 -19.99 -0.11 -5.00 16 17 C -0.03 -0.56 8.03 22.55 0.18 -0.38 16 18 C -0.08 -1.39 6.31 22.29 0.14 -1.25 16 19 Cl -0.05 -0.82 28.94 -2.72 -0.08 -0.90 16 20 C -0.06 -0.92 9.78 22.35 0.22 -0.70 16 21 C 0.02 0.32 7.30 22.46 0.16 0.49 16 22 F -0.13 -2.50 16.64 44.97 0.75 -1.75 16 23 C 0.24 5.63 6.74 38.70 0.26 5.89 16 24 N -0.85 -18.56 8.92 -50.77 -0.45 -19.01 16 25 C 0.10 3.99 6.23 86.73 0.54 4.53 16 26 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 27 H 0.38 12.92 9.07 -74.06 -0.67 12.25 16 28 H 0.08 2.95 8.04 -2.39 -0.02 2.93 16 29 H 0.08 2.93 5.00 -2.39 -0.01 2.92 16 30 H 0.10 2.26 7.41 -2.38 -0.02 2.24 16 31 H 0.09 2.25 7.05 -2.39 -0.02 2.23 16 32 H 0.15 2.97 6.21 -2.91 -0.02 2.95 16 33 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.41 10.54 6.32 -92.71 -0.59 9.96 16 35 H 0.41 6.98 8.31 -92.71 -0.77 6.21 16 36 H 0.06 2.43 8.07 -2.39 -0.02 2.41 16 37 H 0.05 2.22 7.65 -2.39 -0.02 2.21 16 Total: -1.00 -64.83 320.03 0.15 -64.68 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: -1.06 Total: 32.69 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 3.31 Total: 4.44 kcal Atomic # 7 Polarization: -93.86 SS G_CDS: -2.87 Total: -96.73 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -1.57 Total: -45.16 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.75 Total: -1.75 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.67 Total: 42.73 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.90 kcal Total: -64.83 0.15 -64.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592851286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.734 kcal (2) G-P(sol) polarization free energy of solvation -64.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds