Wall clock time and date at job start Tue Mar 31 2020 14:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39962 * 120.62003 * 349.90431 * 3 2 1 5 5 C 1.38376 * 118.36894 * 180.26706 * 4 3 2 6 6 C 1.38354 * 119.52357 * 359.74471 * 5 4 3 7 7 C 1.50699 * 119.38662 * 179.97438 * 6 5 4 8 8 F 1.39902 * 109.47182 * 185.02296 * 7 6 5 9 9 F 1.39901 * 109.47041 * 305.01946 * 7 6 5 10 10 F 1.39897 * 109.47535 * 65.02008 * 7 6 5 11 11 N 1.31856 * 121.23232 * 0.02562 * 6 5 4 12 12 C 1.32472 * 121.77100 * 0.02562 * 11 6 5 13 13 S 1.76194 * 119.83150 * 179.97438 * 12 11 6 14 14 C 1.81001 * 100.00211 * 359.97438 * 13 12 11 15 15 C 1.52999 * 109.47177 * 180.02562 * 14 13 12 16 16 C 1.50706 * 115.55288 * 39.92058 * 15 14 13 17 17 H 1.07996 * 119.99882 * 264.91758 * 16 15 14 18 18 C 1.37874 * 119.99462 * 84.90981 * 16 15 14 19 19 N 1.31506 * 120.00424 * 353.81690 * 18 16 15 20 20 Si 1.86802 * 119.99690 * 173.81699 * 18 16 15 21 21 H 1.48502 * 109.47358 * 89.99911 * 20 18 16 22 22 H 1.48497 * 109.46962 * 210.00264 * 20 18 16 23 23 H 1.48502 * 109.47082 * 329.99702 * 20 18 16 24 24 C 1.53005 * 117.49802 * 254.21998 * 15 14 13 25 25 C 1.52995 * 117.49929 * 185.59472 * 15 14 13 26 26 H 1.07998 * 120.80810 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.23906 * 179.72568 * 5 4 3 28 28 H 1.08997 * 109.46920 * 299.99706 * 14 13 12 29 29 H 1.09000 * 109.47077 * 60.00328 * 14 13 12 30 30 H 0.97004 * 120.00284 * 175.02269 * 19 18 16 31 31 H 1.08996 * 117.49519 * 359.97438 * 24 15 14 32 32 H 1.08994 * 117.50070 * 145.02416 * 24 15 14 33 33 H 1.08996 * 117.50300 * 214.97481 * 25 15 14 34 34 H 1.08997 * 117.49955 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2814 -1.1849 0.2111 5 6 4.6640 -1.1297 0.2072 6 6 5.2975 0.0813 -0.0083 7 6 6.8034 0.1378 -0.0113 8 9 7.2198 1.4680 -0.1320 9 9 7.2926 -0.3972 1.1852 10 9 7.2958 -0.6046 -1.0899 11 7 4.6081 1.1870 -0.2100 12 6 3.2834 1.1919 -0.2156 13 16 2.4137 2.6995 -0.4897 14 6 3.8087 3.8356 -0.6881 15 6 3.2826 5.2495 -0.9434 16 6 2.0768 5.6506 -0.1332 17 1 1.0860 5.5399 -0.5486 18 6 2.2386 6.1586 1.1382 19 7 3.4317 6.1804 1.6908 20 14 0.7628 6.8160 2.0761 21 1 0.1461 5.7172 2.8620 22 1 1.2018 7.8963 2.9955 23 1 -0.2327 7.3572 1.1162 24 6 3.3910 5.7971 -2.3680 25 6 4.3084 6.3369 -1.2689 26 1 2.7653 -2.1188 0.3778 27 1 5.2445 -2.0255 0.3714 28 1 4.4126 3.8314 0.2192 29 1 4.4195 3.5169 -1.5328 30 1 3.5585 6.6028 2.5548 31 1 3.8374 5.1502 -3.1231 32 1 2.5901 6.4475 -2.7194 33 1 4.1111 7.3424 -0.8975 34 1 5.3582 6.0451 -1.3008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594895367.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:41 Heat of formation + Delta-G solvation = -59.926905 kcal Electronic energy + Delta-G solvation = -24845.698046 eV Core-core repulsion = 20649.069069 eV Total energy + Delta-G solvation = -4196.628977 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.055 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.23038 -47.79142 -47.63168 -40.43469 -36.77313 -36.59947 -33.12540 -32.41562 -32.07416 -27.94893 -27.20725 -25.52778 -24.36413 -23.28243 -21.21160 -19.74111 -19.25515 -18.79769 -18.63565 -18.55067 -16.96694 -16.57922 -15.76517 -14.97759 -14.71038 -14.57080 -14.51622 -14.44272 -14.19748 -14.14197 -13.82923 -13.78986 -13.77629 -13.60183 -13.27350 -12.99784 -12.92254 -12.74970 -12.35605 -12.08342 -11.57875 -11.09675 -10.99378 -10.58089 -10.42615 -10.30826 -10.14901 -9.94190 -9.92135 -9.65746 -8.93180 -8.56684 -8.18420 -7.19911 -6.17587 -4.25302 0.07743 0.81793 1.79387 2.28071 2.55845 2.64068 2.96055 3.24441 3.31906 3.35182 3.39447 3.50906 3.69887 3.90080 4.26280 4.32042 4.45296 4.68571 4.79688 4.84986 5.12465 5.19799 5.39365 5.55722 5.89028 5.93314 6.08141 6.35599 6.41012 6.64846 6.74790 6.98689 7.21253 7.23057 7.38360 7.43527 7.74315 8.21937 8.76587 9.42168 10.90317 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.004639 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.027541 B = 6034.169455 C = 7197.630153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C 0.257 3.743 3 C -0.055 4.055 4 C -0.003 4.003 5 C -0.159 4.159 6 C 0.086 3.914 7 C 0.521 3.479 8 F -0.157 7.157 9 F -0.170 7.170 10 F -0.171 7.171 11 N -0.448 5.448 12 C 0.149 3.851 13 S 0.035 5.965 14 C -0.053 4.053 15 C 0.044 3.956 16 C -0.499 4.499 17 H 0.064 0.936 18 C 0.081 3.919 19 N -0.867 5.867 20 Si 0.885 3.115 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.272 1.272 24 C -0.207 4.207 25 C -0.144 4.144 26 H 0.156 0.844 27 H 0.153 0.847 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.263 0.737 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.145 -14.990 -2.973 16.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.066 5.066 2 C -0.060 4.060 3 C -0.070 4.070 4 C -0.032 4.032 5 C -0.185 4.185 6 C -0.060 4.060 7 C 0.465 3.535 8 F -0.138 7.138 9 F -0.152 7.152 10 F -0.153 7.153 11 N -0.161 5.161 12 C -0.102 4.102 13 S 0.288 5.712 14 C -0.201 4.201 15 C 0.042 3.958 16 C -0.538 4.538 17 H 0.082 0.918 18 C -0.125 4.125 19 N -0.502 5.502 20 Si 0.712 3.288 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.244 4.244 25 C -0.184 4.184 26 H 0.174 0.826 27 H 0.170 0.830 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.681 -13.758 -3.001 14.555 hybrid contribution 1.084 -0.515 0.871 1.483 sum 4.765 -14.273 -2.129 15.197 Atomic orbital electron populations 1.81227 1.11425 1.06379 1.07604 1.24995 0.91934 0.94500 0.94529 1.16570 0.85967 0.94637 1.09854 1.21472 0.93119 0.97044 0.91573 1.21451 0.95047 0.98116 1.03892 1.21192 0.93087 0.91743 0.99971 1.17891 0.86959 0.74658 0.73975 1.93285 1.91311 1.33705 1.95457 1.93232 1.89227 1.86288 1.46435 1.93230 1.89155 1.77110 1.55792 1.67926 1.06505 1.27572 1.14053 1.24554 0.91448 0.99902 0.94309 1.86602 1.11436 0.91718 1.81397 1.23411 0.95412 0.96593 1.04733 1.18564 0.97089 0.87661 0.92486 1.20366 0.91007 1.43936 0.98511 0.91783 1.24931 0.95805 0.94969 0.96750 1.69997 1.21790 1.41471 1.16986 0.86696 0.83146 0.78923 0.80001 1.20303 1.21011 1.19658 1.23106 1.03322 1.05316 0.92674 1.22551 0.94133 0.99921 1.01809 0.82595 0.82953 0.88354 0.91378 0.92710 0.91408 0.90095 0.89702 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -6.42 18.54 41.84 0.78 -5.64 16 2 C 0.26 3.78 14.32 -22.47 -0.32 3.45 16 3 C -0.06 -0.73 5.77 -106.42 -0.61 -1.35 16 4 C 0.00 -0.03 9.90 -38.89 -0.39 -0.41 16 5 C -0.16 -1.49 9.57 -39.49 -0.38 -1.87 16 6 C 0.09 1.11 6.27 -82.54 -0.52 0.59 16 7 C 0.52 6.43 3.31 36.01 0.12 6.55 16 8 F -0.16 -2.32 16.84 2.25 0.04 -2.29 16 9 F -0.17 -1.96 17.15 2.25 0.04 -1.92 16 10 F -0.17 -1.94 17.28 2.25 0.04 -1.90 16 11 N -0.45 -7.19 8.49 -7.93 -0.07 -7.26 16 12 C 0.15 2.42 7.01 -16.38 -0.11 2.30 16 13 S 0.04 0.69 19.90 -107.50 -2.14 -1.45 16 14 C -0.05 -1.12 4.95 37.16 0.18 -0.93 16 15 C 0.04 1.01 1.64 -155.66 -0.26 0.76 16 16 C -0.50 -12.73 7.54 -34.44 -0.26 -12.99 16 17 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 18 C 0.08 2.11 5.39 -17.82 -0.10 2.01 16 19 N -0.87 -23.30 12.93 55.43 0.72 -22.58 16 20 Si 0.89 20.54 29.55 -169.99 -5.02 15.52 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 C -0.21 -4.26 9.88 -26.72 -0.26 -4.52 16 25 C -0.14 -3.19 9.47 -26.73 -0.25 -3.45 16 26 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 27 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 28 H 0.10 2.29 8.12 -51.92 -0.42 1.87 16 29 H 0.07 1.34 7.93 -51.92 -0.41 0.92 16 30 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 31 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 32 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 337.84 15.07 5.09 5.09 Total: -1.00 -27.73 337.84 -6.60 -34.34 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -2.91 Total: -2.04 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -3.16 Total: -9.85 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 1.42 Total: -35.48 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.12 Total: -6.11 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.14 Total: -1.45 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.73 -6.60 -34.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594895367.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.591 kcal (2) G-P(sol) polarization free energy of solvation -27.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds