Wall clock time and date at job start Tue Mar 31 2020 14:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39962 * 120.62003 * 349.90431 * 3 2 1 5 5 C 1.38376 * 118.36894 * 180.26706 * 4 3 2 6 6 C 1.38354 * 119.52357 * 359.74471 * 5 4 3 7 7 C 1.50699 * 119.38662 * 179.97438 * 6 5 4 8 8 F 1.39902 * 109.47182 * 185.02296 * 7 6 5 9 9 F 1.39901 * 109.47041 * 305.01946 * 7 6 5 10 10 F 1.39897 * 109.47535 * 65.02008 * 7 6 5 11 11 N 1.31856 * 121.23232 * 0.02562 * 6 5 4 12 12 C 1.32472 * 121.77100 * 0.02562 * 11 6 5 13 13 S 1.76194 * 119.83150 * 179.97438 * 12 11 6 14 14 C 1.81001 * 100.00211 * 359.97438 * 13 12 11 15 15 C 1.52999 * 109.47177 * 180.02562 * 14 13 12 16 16 C 1.50706 * 115.55288 * 39.92058 * 15 14 13 17 17 H 1.07996 * 119.99882 * 264.91758 * 16 15 14 18 18 C 1.37874 * 119.99462 * 84.90981 * 16 15 14 19 19 N 1.31506 * 120.00424 * 353.81690 * 18 16 15 20 20 Si 1.86802 * 119.99690 * 173.81699 * 18 16 15 21 21 H 1.48502 * 109.47358 * 89.99911 * 20 18 16 22 22 H 1.48497 * 109.46962 * 210.00264 * 20 18 16 23 23 H 1.48502 * 109.47082 * 329.99702 * 20 18 16 24 24 C 1.53005 * 117.49802 * 254.21998 * 15 14 13 25 25 C 1.52995 * 117.49929 * 185.59472 * 15 14 13 26 26 H 1.07998 * 120.80810 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.23906 * 179.72568 * 5 4 3 28 28 H 1.08997 * 109.46920 * 299.99706 * 14 13 12 29 29 H 1.09000 * 109.47077 * 60.00328 * 14 13 12 30 30 H 0.97004 * 120.00284 * 175.02269 * 19 18 16 31 31 H 1.08996 * 117.49519 * 359.97438 * 24 15 14 32 32 H 1.08994 * 117.50070 * 145.02416 * 24 15 14 33 33 H 1.08996 * 117.50300 * 214.97481 * 25 15 14 34 34 H 1.08997 * 117.49955 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2814 -1.1849 0.2111 5 6 4.6640 -1.1297 0.2072 6 6 5.2975 0.0813 -0.0083 7 6 6.8034 0.1378 -0.0113 8 9 7.2198 1.4680 -0.1320 9 9 7.2926 -0.3972 1.1852 10 9 7.2958 -0.6046 -1.0899 11 7 4.6081 1.1870 -0.2100 12 6 3.2834 1.1919 -0.2156 13 16 2.4137 2.6995 -0.4897 14 6 3.8087 3.8356 -0.6881 15 6 3.2826 5.2495 -0.9434 16 6 2.0768 5.6506 -0.1332 17 1 1.0860 5.5399 -0.5486 18 6 2.2386 6.1586 1.1382 19 7 3.4317 6.1804 1.6908 20 14 0.7628 6.8160 2.0761 21 1 0.1461 5.7172 2.8620 22 1 1.2018 7.8963 2.9955 23 1 -0.2327 7.3572 1.1162 24 6 3.3910 5.7971 -2.3680 25 6 4.3084 6.3369 -1.2689 26 1 2.7653 -2.1188 0.3778 27 1 5.2445 -2.0255 0.3714 28 1 4.4126 3.8314 0.2192 29 1 4.4195 3.5169 -1.5328 30 1 3.5585 6.6028 2.5548 31 1 3.8374 5.1502 -3.1231 32 1 2.5901 6.4475 -2.7194 33 1 4.1111 7.3424 -0.8975 34 1 5.3582 6.0451 -1.3008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594895367.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:41 Heat of formation + Delta-G solvation = -73.388340 kcal Electronic energy + Delta-G solvation = -24846.281778 eV Core-core repulsion = 20649.069069 eV Total energy + Delta-G solvation = -4197.212709 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.055 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.20683 -48.71990 -48.67538 -41.49044 -38.48248 -37.84972 -34.15729 -34.03874 -33.44579 -29.57084 -28.27067 -27.44988 -25.46369 -24.26279 -22.94417 -21.34027 -20.38257 -19.99466 -19.59423 -19.56438 -18.24936 -18.04572 -17.20605 -16.63172 -16.06252 -15.70780 -15.54106 -15.48607 -15.42183 -15.32962 -15.10313 -14.96635 -14.81174 -14.80882 -14.56803 -14.35769 -14.13872 -13.96015 -13.84571 -13.46005 -13.12672 -12.97198 -12.86482 -12.40511 -12.04873 -11.76097 -11.48673 -11.33102 -11.04817 -10.95283 -10.75062 -10.49632 -9.94690 -8.64315 -8.14817 -6.25818 -0.94672 -0.12759 0.49067 1.15414 1.37433 1.41006 1.41814 1.48505 1.56746 1.58021 2.37562 2.40195 2.43407 2.65647 2.89215 3.15375 3.30666 3.43094 3.48990 3.75026 3.87619 3.98105 4.20472 4.37830 4.51218 4.64569 4.67049 4.71915 4.96872 4.99535 5.11533 5.22190 5.47822 5.61340 5.73431 6.15081 6.30605 6.31362 6.78452 7.43004 8.92749 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.004639 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.027541 B = 6034.169455 C = 7197.630153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.273 3.727 3 C -0.055 4.055 4 C 0.023 3.977 5 C -0.125 4.125 6 C 0.066 3.934 7 C 0.525 3.475 8 F -0.177 7.177 9 F -0.163 7.163 10 F -0.163 7.163 11 N -0.478 5.478 12 C 0.139 3.861 13 S -0.023 6.023 14 C -0.028 4.028 15 C 0.016 3.984 16 C -0.502 4.502 17 H 0.051 0.949 18 C 0.041 3.959 19 N -0.895 5.895 20 Si 0.933 3.067 21 H -0.280 1.280 22 H -0.281 1.281 23 H -0.270 1.270 24 C -0.183 4.183 25 C -0.149 4.149 26 H 0.209 0.791 27 H 0.202 0.798 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.261 0.739 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.646 -18.270 -3.123 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.043 4.043 3 C -0.069 4.069 4 C -0.006 4.006 5 C -0.149 4.149 6 C -0.078 4.078 7 C 0.470 3.530 8 F -0.158 7.158 9 F -0.145 7.145 10 F -0.144 7.144 11 N -0.190 5.190 12 C -0.112 4.112 13 S 0.227 5.773 14 C -0.177 4.177 15 C 0.014 3.986 16 C -0.541 4.541 17 H 0.069 0.931 18 C -0.161 4.161 19 N -0.532 5.532 20 Si 0.759 3.241 21 H -0.206 1.206 22 H -0.206 1.206 23 H -0.194 1.194 24 C -0.220 4.220 25 C -0.189 4.189 26 H 0.226 0.774 27 H 0.219 0.781 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.206 -17.057 -3.153 17.848 hybrid contribution 1.041 0.243 0.900 1.398 sum 5.248 -16.813 -2.253 17.757 Atomic orbital electron populations 1.81244 1.12483 1.07480 1.08819 1.25166 0.92114 0.93483 0.93517 1.16721 0.85240 0.95118 1.09849 1.22081 0.92914 0.97150 0.88437 1.22057 0.95303 0.98141 0.99448 1.21488 0.93165 0.92312 1.00849 1.17844 0.86878 0.73974 0.74354 1.93248 1.91524 1.35422 1.95600 1.93248 1.89146 1.86025 1.46040 1.93249 1.89056 1.76694 1.55417 1.67715 1.06578 1.29756 1.14980 1.23936 0.91774 0.98708 0.96800 1.86466 1.12146 0.94300 1.84378 1.22965 0.95423 0.96020 1.03307 1.18698 0.96850 0.88902 0.94107 1.20487 0.91362 1.43413 0.98809 0.93080 1.25471 0.97550 0.95564 0.97524 1.70085 1.23069 1.42765 1.17238 0.85947 0.80884 0.78281 0.78960 1.20620 1.20633 1.19423 1.23104 1.02405 1.04491 0.92027 1.22457 0.94729 0.98713 1.02954 0.77403 0.78099 0.91517 0.90539 0.92994 0.88907 0.90071 0.91728 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -13.56 18.54 19.00 0.35 -13.21 16 2 C 0.27 7.60 14.32 88.33 1.26 8.86 16 3 C -0.05 -1.32 5.77 -21.03 -0.12 -1.44 16 4 C 0.02 0.30 9.90 22.72 0.22 0.53 16 5 C -0.12 -1.67 9.57 22.33 0.21 -1.45 16 6 C 0.07 1.52 6.27 42.58 0.27 1.79 16 7 C 0.52 11.78 3.31 71.24 0.24 12.01 16 8 F -0.18 -5.17 16.84 44.97 0.76 -4.41 16 9 F -0.16 -3.29 17.15 44.97 0.77 -2.52 16 10 F -0.16 -3.21 17.28 44.97 0.78 -2.44 16 11 N -0.48 -14.90 8.49 -179.00 -1.52 -16.42 16 12 C 0.14 4.44 7.01 85.18 0.60 5.04 16 13 S -0.02 -0.91 19.90 -56.49 -1.12 -2.04 16 14 C -0.03 -1.24 4.95 71.98 0.36 -0.88 16 15 C 0.02 0.76 1.64 -52.93 -0.09 0.67 16 16 C -0.50 -26.42 7.54 25.60 0.19 -26.23 16 17 H 0.05 2.76 7.82 -2.91 -0.02 2.73 16 18 C 0.04 2.20 5.39 84.66 0.46 2.66 16 19 N -0.89 -49.71 12.93 21.44 0.28 -49.43 16 20 Si 0.93 43.16 29.55 68.60 2.03 45.19 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 24 C -0.18 -7.52 9.88 30.60 0.30 -7.22 16 25 C -0.15 -6.73 9.47 30.59 0.29 -6.44 16 26 H 0.21 0.73 8.06 -2.91 -0.02 0.70 16 27 H 0.20 0.86 8.06 -2.91 -0.02 0.84 16 28 H 0.07 3.27 8.12 -2.40 -0.02 3.25 16 29 H 0.08 3.08 7.93 -2.40 -0.02 3.06 16 30 H 0.26 13.97 8.32 -92.71 -0.77 13.20 16 31 H 0.09 3.32 8.08 -2.39 -0.02 3.30 16 32 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 33 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.08 3.22 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -64.18 337.84 7.67 -56.51 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: 1.16 Total: 0.89 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 4.19 Total: -12.11 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -0.89 Total: -79.06 kcal Atomic # 9 Polarization: -11.68 SS G_CDS: 2.31 Total: -9.37 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -1.12 Total: -2.04 kcal Total: -64.18 7.67 -56.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594895367.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.882 kcal (2) G-P(sol) polarization free energy of solvation -64.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds