Wall clock time and date at job start Tue Mar 31 2020 15:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99876 * 2 1 4 4 H 1.48493 * 109.47005 * 269.99975 * 3 2 1 5 5 H 1.48501 * 109.47040 * 29.99913 * 3 2 1 6 6 H 1.48500 * 109.46752 * 149.99767 * 3 2 1 7 7 C 1.38804 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00288 * 163.08058 * 7 2 1 9 9 N 1.36939 * 119.99958 * 343.08098 * 7 2 1 10 10 C 1.46924 * 120.62993 * 331.83412 * 9 7 2 11 11 C 1.53192 * 108.77591 * 233.58522 * 10 9 7 12 12 C 1.53036 * 109.31293 * 305.36430 * 11 10 9 13 13 C 1.53038 * 109.54003 * 61.36202 * 12 11 10 14 14 H 1.09004 * 109.49876 * 58.58814 * 13 12 11 15 15 C 1.53001 * 109.50103 * 178.64998 * 13 12 11 16 16 N 1.46499 * 109.47439 * 185.00208 * 15 13 12 17 17 C 1.34773 * 120.00221 * 180.02562 * 16 15 13 18 18 O 1.21656 * 119.99846 * 359.97438 * 17 16 15 19 19 C 1.47050 * 119.99870 * 180.02562 * 17 16 15 20 20 C 1.44506 * 123.49193 * 359.71586 * 19 17 16 21 21 C 1.32692 * 113.09400 * 179.81055 * 20 19 17 22 22 S 1.75492 * 110.63471 * 0.45168 * 21 20 19 23 23 C 1.36229 * 123.48866 * 180.02562 * 19 17 16 24 24 Cl 1.73596 * 124.60532 * 359.94946 * 23 19 17 25 25 C 1.46920 * 120.63092 * 151.55029 * 9 7 2 26 26 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.58627 * 353.37206 * 10 9 7 28 28 H 1.08997 * 109.58757 * 113.65672 * 10 9 7 29 29 H 1.08996 * 109.49789 * 65.31574 * 11 10 9 30 30 H 1.09005 * 109.49945 * 185.38058 * 11 10 9 31 31 H 1.08998 * 109.46142 * 181.38594 * 12 11 10 32 32 H 1.09004 * 109.46070 * 301.35904 * 12 11 10 33 33 H 1.08996 * 109.47491 * 305.00380 * 15 13 12 34 34 H 1.08998 * 109.46869 * 65.00537 * 15 13 12 35 35 H 0.97009 * 119.99417 * 359.97438 * 16 15 13 36 36 H 1.07995 * 123.45213 * 359.97438 * 20 19 17 37 37 H 1.08003 * 124.68321 * 180.14825 * 21 20 19 38 38 H 1.08999 * 109.58855 * 246.20212 * 25 9 7 39 39 H 1.08998 * 109.58990 * 6.63087 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2717 9 7 1.3701 -2.3622 0.3462 10 6 0.2262 -2.3399 1.2679 11 6 0.4976 -3.3191 2.4143 12 6 0.8120 -4.7007 1.8361 13 6 2.0672 -4.6173 0.9647 14 1 2.9023 -4.2537 1.5635 15 6 2.4001 -6.0056 0.4143 16 7 3.6661 -5.9490 -0.3206 17 6 4.1608 -7.0620 -0.8975 18 8 3.5563 -8.1139 -0.8074 19 6 5.4319 -7.0052 -1.6347 20 6 6.2088 -5.7970 -1.7927 21 6 7.3215 -5.9815 -2.4917 22 16 7.4611 -7.6547 -3.0020 23 6 5.9960 -8.0849 -2.2446 24 17 5.3154 -9.6818 -2.2492 25 6 1.8101 -3.6521 -0.2025 26 1 -0.4850 0.8400 -0.0004 27 1 0.0994 -1.3342 1.6687 28 1 -0.6774 -2.6379 0.7362 29 1 1.3473 -2.9677 2.9995 30 1 -0.3828 -3.3836 3.0539 31 1 0.9813 -5.4052 2.6504 32 1 -0.0282 -5.0407 1.2306 33 1 2.4904 -6.7117 1.2397 34 1 1.6048 -6.3306 -0.2565 35 1 4.1479 -5.1101 -0.3927 36 1 5.9152 -4.8425 -1.3817 37 1 8.0395 -5.2075 -2.7196 38 1 1.0335 -4.0574 -0.8511 39 1 2.7288 -3.5126 -0.7722 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598688864.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:41 Heat of formation + Delta-G solvation = -14.090377 kcal Electronic energy + Delta-G solvation = -23134.814550 eV Core-core repulsion = 19615.430180 eV Total energy + Delta-G solvation = -3519.384371 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.02848 -39.41537 -38.16288 -37.42992 -36.23917 -34.64043 -32.28947 -31.95571 -30.57120 -27.59477 -27.16789 -25.16568 -23.80445 -22.74148 -22.31607 -20.93535 -20.22215 -19.45485 -18.65371 -17.77063 -16.92916 -16.80907 -16.52767 -15.80835 -15.62566 -15.37938 -15.05011 -14.91995 -14.54229 -14.46810 -14.45130 -14.07924 -13.91215 -13.73126 -13.49823 -12.98973 -12.85627 -12.60765 -12.47439 -12.25576 -12.11540 -12.04487 -11.96442 -11.81447 -11.56581 -11.31853 -11.08671 -10.84610 -10.51113 -10.14728 -9.83986 -9.51119 -8.65466 -7.84695 -5.30937 -0.48936 0.00770 0.70067 0.92462 1.17892 1.48623 1.50676 1.59773 2.24558 2.28183 2.53159 3.30591 3.60495 3.69579 3.98371 4.00151 4.02235 4.06488 4.20681 4.42351 4.58477 4.61996 4.70823 4.78348 4.89463 4.91866 4.96873 5.02440 5.09322 5.12183 5.23896 5.34301 5.39526 5.48655 5.58991 5.68715 5.79991 6.40937 6.51512 7.16914 7.17934 7.88254 8.40874 9.21590 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015804 B = 0.003024 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.266339 B = 9256.889095 C =10740.535942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.966 3.034 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.261 4.261 8 H 0.073 0.927 9 N -0.609 5.609 10 C 0.173 3.827 11 C -0.129 4.129 12 C -0.097 4.097 13 C -0.099 4.099 14 H 0.079 0.921 15 C 0.139 3.861 16 N -0.709 5.709 17 C 0.567 3.433 18 O -0.564 6.564 19 C -0.170 4.170 20 C -0.114 4.114 21 C -0.211 4.211 22 S 0.274 5.726 23 C -0.151 4.151 24 Cl 0.000 7.000 25 C 0.152 3.848 26 H 0.248 0.752 27 H 0.051 0.949 28 H -0.009 1.009 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.410 0.590 36 H 0.172 0.828 37 H 0.211 0.789 38 H 0.004 0.996 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.634 -14.646 -2.853 22.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.248 4.248 3 Si 0.794 3.206 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.391 4.391 8 H 0.091 0.909 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.168 4.168 12 C -0.135 4.135 13 C -0.120 4.120 14 H 0.097 0.903 15 C 0.015 3.985 16 N -0.361 5.361 17 C 0.353 3.647 18 O -0.444 6.444 19 C -0.190 4.190 20 C -0.142 4.142 21 C -0.346 4.346 22 S 0.538 5.462 23 C -0.298 4.298 24 Cl 0.028 6.972 25 C 0.027 3.973 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.009 0.991 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.247 0.753 36 H 0.190 0.810 37 H 0.228 0.772 38 H 0.022 0.978 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.109 -16.172 -3.622 23.820 hybrid contribution -1.329 2.044 0.655 2.524 sum 15.779 -14.129 -2.967 21.387 Atomic orbital electron populations 1.70204 1.06858 1.25756 1.55550 1.25827 0.95960 1.01625 1.01362 0.85300 0.78213 0.79553 0.77520 1.21215 1.22335 1.19072 1.19558 0.93008 0.85831 1.40749 0.90920 1.44320 1.35944 1.02332 1.50592 1.20626 0.87670 0.97755 0.89256 1.21989 1.00962 0.95879 0.97991 1.21337 0.96542 0.96811 0.98860 1.21792 0.99099 0.93293 0.97773 0.90276 1.21285 0.84742 0.96929 0.95534 1.45838 1.24471 1.11672 1.54124 1.17785 0.84467 0.83685 0.78752 1.90813 1.61341 1.30591 1.61675 1.20409 0.98581 0.94016 1.06035 1.21297 0.94245 0.97590 1.01056 1.26004 1.03219 1.00543 1.04845 1.83031 1.12201 1.02301 1.48683 1.25642 1.04074 0.92179 1.07905 1.98398 1.84059 1.17726 1.96977 1.21108 0.97109 0.85771 0.93327 0.94264 0.93037 0.99108 0.92693 0.91346 0.90184 0.92785 0.90878 0.92537 0.75254 0.81043 0.77176 0.97831 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.09 11.20 21.65 0.24 -54.85 16 2 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 3 Si 0.97 43.53 29.59 68.60 2.03 45.56 16 4 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.26 -13.80 9.58 84.03 0.81 -13.00 16 8 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 9 N -0.61 -29.49 2.99 -698.28 -2.09 -31.58 16 10 C 0.17 8.22 5.30 86.36 0.46 8.68 16 11 C -0.13 -4.64 6.08 30.67 0.19 -4.45 16 12 C -0.10 -2.96 5.16 30.62 0.16 -2.80 16 13 C -0.10 -3.02 2.38 -10.57 -0.03 -3.05 16 14 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 15 C 0.14 3.84 5.07 86.38 0.44 4.27 16 16 N -0.71 -18.28 5.31 -466.73 -2.48 -20.76 16 17 C 0.57 16.30 7.79 86.55 0.67 16.98 16 18 O -0.56 -19.82 14.91 -4.21 -0.06 -19.88 16 19 C -0.17 -3.98 5.98 -19.84 -0.12 -4.10 16 20 C -0.11 -1.87 9.90 22.70 0.22 -1.65 16 21 C -0.21 -2.47 11.11 66.65 0.74 -1.73 16 22 S 0.27 3.69 23.02 -56.49 -1.30 2.39 16 23 C -0.15 -3.34 6.87 67.35 0.46 -2.87 16 24 Cl 0.00 -0.01 27.20 -2.72 -0.07 -0.08 16 25 C 0.15 5.93 5.63 86.51 0.49 6.42 16 26 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 27 H 0.05 2.79 6.06 -2.39 -0.01 2.78 16 28 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 29 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.41 9.06 6.26 -92.70 -0.58 8.48 16 36 H 0.17 2.26 7.10 -2.91 -0.02 2.24 16 37 H 0.21 1.02 8.06 -2.91 -0.02 1.00 16 38 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.06 2.13 7.16 -2.39 -0.02 2.12 16 Total: -1.00 -69.07 345.43 1.67 -67.39 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.50 Total: 11.57 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 4.91 Total: 0.24 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -4.32 Total: -107.19 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.06 Total: -19.88 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.30 Total: 2.39 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -0.07 Total: -0.08 kcal Total: -69.07 1.67 -67.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598688864.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.301 kcal (2) G-P(sol) polarization free energy of solvation -69.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds