Wall clock time and date at job start Tue Mar 31 2020 15:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99971 * 2 1 4 4 H 1.48496 * 109.46835 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47331 * 300.00260 * 3 2 1 6 6 H 1.48502 * 109.46925 * 60.00223 * 3 2 1 7 7 C 1.38805 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00125 * 197.37162 * 7 2 1 9 9 N 1.36943 * 120.00410 * 17.36974 * 7 2 1 10 10 C 1.46930 * 120.62488 * 27.67617 * 9 7 2 11 11 C 1.53192 * 108.77094 * 126.39245 * 10 9 7 12 12 C 1.53036 * 109.31859 * 54.63489 * 11 10 9 13 13 C 1.53042 * 109.53461 * 298.63348 * 12 11 10 14 14 H 1.08999 * 109.49941 * 301.38108 * 13 12 11 15 15 C 1.53002 * 109.49894 * 181.31393 * 13 12 11 16 16 N 1.46500 * 109.47322 * 175.06326 * 15 13 12 17 17 C 1.34775 * 120.00058 * 180.02562 * 16 15 13 18 18 O 1.21648 * 120.00239 * 0.02562 * 17 16 15 19 19 C 1.47042 * 119.99762 * 179.97438 * 17 16 15 20 20 C 1.44510 * 123.49605 * 0.02562 * 19 17 16 21 21 C 1.32693 * 113.10002 * 179.97438 * 20 19 17 22 22 S 1.75493 * 110.62954 * 0.02562 * 21 20 19 23 23 C 1.36230 * 123.49035 * 179.70334 * 19 17 16 24 24 Cl 1.73597 * 124.60428 * 0.03559 * 23 19 17 25 25 C 1.46928 * 120.60671 * 207.65142 * 9 7 2 26 26 H 0.97002 * 120.00210 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.58958 * 6.60581 * 10 9 7 28 28 H 1.08993 * 109.70007 * 246.24440 * 10 9 7 29 29 H 1.08997 * 109.49953 * 294.67585 * 11 10 9 30 30 H 1.09011 * 109.49548 * 174.58597 * 11 10 9 31 31 H 1.08993 * 109.46569 * 178.61676 * 12 11 10 32 32 H 1.08997 * 109.44939 * 58.64170 * 12 11 10 33 33 H 1.09002 * 109.46670 * 55.06616 * 15 13 12 34 34 H 1.08996 * 109.47314 * 295.06690 * 15 13 12 35 35 H 0.97002 * 119.99776 * 0.27773 * 16 15 13 36 36 H 1.07995 * 123.44629 * 359.97438 * 20 19 17 37 37 H 1.07997 * 124.68367 * 180.02562 * 21 20 19 38 38 H 1.08995 * 109.56016 * 113.80710 * 25 9 7 39 39 H 1.09003 * 109.61934 * 353.38513 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0533 -1.2236 0.2787 9 7 1.3723 -2.3609 -0.3551 10 6 0.2279 -2.3337 -1.2762 11 6 0.5012 -3.3028 -2.4307 12 6 0.8192 -4.6884 -1.8641 13 6 2.0747 -4.6091 -0.9926 14 1 2.9087 -4.2390 -1.5888 15 6 2.4106 -6.0009 -0.4531 16 7 3.6760 -5.9470 0.2831 17 6 4.1737 -7.0637 0.8504 18 8 3.5724 -8.1164 0.7508 19 6 5.4441 -7.0096 1.5888 20 6 6.2202 -5.8017 1.7534 21 6 7.3302 -5.9878 2.4561 22 16 7.4750 -7.6654 2.9507 23 6 6.0084 -8.0918 2.1941 24 17 5.3285 -9.6891 2.1911 25 6 1.8201 -3.6546 0.1783 26 1 -0.4850 0.8400 0.0004 27 1 0.0986 -1.3251 -1.6687 28 1 -0.6756 -2.6393 -0.7488 29 1 1.3499 -2.9445 -3.0134 30 1 -0.3795 -3.3645 -3.0701 31 1 0.9900 -5.3857 -2.6842 32 1 -0.0200 -5.0353 -1.2612 33 1 2.5033 -6.7001 -1.2842 34 1 1.6157 -6.3334 0.2145 35 1 4.1539 -5.1069 0.3653 36 1 5.9267 -4.8456 1.3461 37 1 8.0457 -5.2138 2.6913 38 1 1.0480 -4.0692 0.8263 39 1 2.7410 -3.5178 0.7452 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598688865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:46 Heat of formation + Delta-G solvation = 4.542163 kcal Electronic energy + Delta-G solvation = -23136.188265 eV Core-core repulsion = 19617.611862 eV Total energy + Delta-G solvation = -3518.576403 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -39.95281 -37.99790 -37.19352 -36.59395 -34.81591 -32.99945 -30.53842 -30.43848 -29.77025 -26.35603 -25.31467 -24.08367 -22.21014 -21.69008 -20.92619 -19.67283 -19.00678 -18.61688 -17.06495 -16.55197 -15.81442 -15.39541 -14.88297 -14.57213 -14.41469 -14.20451 -13.84905 -13.57637 -13.44956 -13.42835 -13.19174 -12.79709 -12.35402 -12.20370 -12.16878 -11.79073 -11.44843 -11.30496 -11.14639 -11.04657 -10.74978 -10.50431 -10.23989 -10.19698 -9.97161 -9.83872 -9.56812 -9.43928 -9.14617 -9.00028 -8.74247 -8.49674 -6.70807 -5.82160 -3.24805 0.32606 0.73030 1.40902 1.69310 1.96889 3.28085 3.33334 3.33739 3.41604 3.43259 4.44693 4.46380 4.76990 4.91338 5.11340 5.28090 5.36996 5.42512 5.46328 5.59557 5.60706 5.77747 5.82326 5.95194 5.99535 6.22294 6.31426 6.36129 6.49693 6.57236 6.68682 6.75555 6.84343 6.94486 7.37802 7.57115 7.65274 7.75383 8.25698 8.41022 9.17452 9.81203 10.37923 11.26091 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.003024 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.374797 B = 9257.946695 C =10739.381405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.169 3.831 11 C -0.141 4.141 12 C -0.099 4.099 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.129 3.871 16 N -0.715 5.715 17 C 0.571 3.429 18 O -0.528 6.528 19 C -0.150 4.150 20 C -0.100 4.100 21 C -0.224 4.224 22 S 0.217 5.783 23 C -0.125 4.125 24 Cl 0.018 6.982 25 C 0.154 3.846 26 H 0.253 0.747 27 H 0.086 0.914 28 H 0.017 0.983 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.402 0.598 36 H 0.159 0.841 37 H 0.178 0.822 38 H 0.019 0.981 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.971 -14.519 2.874 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.139 4.139 14 H 0.091 0.909 15 C 0.005 3.995 16 N -0.367 5.367 17 C 0.355 3.645 18 O -0.405 6.405 19 C -0.169 4.169 20 C -0.129 4.129 21 C -0.359 4.359 22 S 0.481 5.519 23 C -0.272 4.272 24 Cl 0.047 6.953 25 C 0.027 3.973 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.237 0.763 36 H 0.177 0.823 37 H 0.195 0.805 38 H 0.037 0.963 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 14.419 -16.047 3.630 21.877 hybrid contribution -0.552 2.023 -0.776 2.236 sum 13.867 -14.024 2.854 19.927 Atomic orbital electron populations 1.70050 1.05283 1.25409 1.53746 1.25030 0.95259 0.98407 1.00897 0.86253 0.79323 0.84053 0.77306 1.20281 1.21558 1.21734 1.19194 0.92652 0.84895 1.41604 0.91708 1.44048 1.35868 1.01160 1.50316 1.20797 0.88520 0.98439 0.87949 1.22170 1.00101 0.95934 0.99869 1.21336 0.96709 0.97747 0.97969 1.21959 0.98882 0.93553 0.99456 0.90859 1.21485 0.84510 0.98052 0.95453 1.45913 1.24998 1.11068 1.54677 1.17383 0.83816 0.84208 0.79050 1.90837 1.60235 1.29418 1.60038 1.20393 0.98950 0.92416 1.05110 1.21216 0.93870 0.98075 0.99715 1.25542 1.03665 0.99895 1.06840 1.83181 1.15118 1.02332 1.51293 1.25266 1.02189 0.92882 1.06826 1.98411 1.83484 1.16555 1.96829 1.20896 0.97439 0.86849 0.92095 0.93659 0.89542 0.96446 0.92759 0.93176 0.93405 0.92446 0.91796 0.91413 0.76264 0.82318 0.80487 0.96310 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.70 11.19 55.49 0.62 -25.08 16 2 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 21.09 29.59 -169.99 -5.03 16.06 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.25 -6.71 9.58 -15.06 -0.14 -6.85 16 8 H 0.07 1.66 7.89 -52.48 -0.41 1.25 16 9 N -0.59 -14.25 3.00 -172.32 -0.52 -14.77 16 10 C 0.17 3.93 5.31 -3.71 -0.02 3.91 16 11 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 12 C -0.10 -1.61 5.17 -26.69 -0.14 -1.75 16 13 C -0.12 -1.89 2.37 -90.50 -0.21 -2.11 16 14 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 15 C 0.13 1.86 5.07 -4.04 -0.02 1.84 16 16 N -0.71 -9.65 5.31 -61.50 -0.33 -9.98 16 17 C 0.57 8.38 7.79 -12.69 -0.10 8.28 16 18 O -0.53 -9.24 14.91 5.23 0.08 -9.16 16 19 C -0.15 -1.84 5.98 -104.58 -0.63 -2.46 16 20 C -0.10 -0.95 9.90 -39.00 -0.39 -1.33 16 21 C -0.22 -1.72 11.11 28.84 0.32 -1.40 16 22 S 0.22 1.76 23.02 -107.50 -2.47 -0.72 16 23 C -0.12 -1.45 6.87 30.01 0.21 -1.24 16 24 Cl 0.02 0.23 27.20 -51.86 -1.41 -1.18 16 25 C 0.15 3.03 5.60 -3.71 -0.02 3.01 16 26 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.09 2.27 6.04 -51.93 -0.31 1.95 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.40 4.78 6.23 -40.82 -0.25 4.53 16 36 H 0.16 1.26 7.10 -52.49 -0.37 0.89 16 37 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.93 7.13 -51.93 -0.37 0.56 16 LS Contribution 345.32 15.07 5.20 5.20 Total: -1.00 -31.07 345.32 -10.33 -41.40 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.09 Total: 1.12 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -1.39 Total: -2.89 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.22 Total: -49.83 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.08 Total: -9.16 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.47 Total: -0.72 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -1.41 Total: -1.18 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.07 -10.33 -41.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598688865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.946 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds