Wall clock time and date at job start Tue Mar 31 2020 14:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00258 * 2 1 4 4 C 1.53785 * 113.69063 * 110.93650 * 3 2 1 5 5 C 1.53777 * 87.08241 * 89.12535 * 4 3 2 6 6 C 1.50703 * 113.61172 * 139.97748 * 5 4 3 7 7 O 1.21287 * 120.00203 * 262.50369 * 6 5 4 8 8 N 1.34774 * 119.99476 * 82.50631 * 6 5 4 9 9 C 1.38902 * 119.99627 * 179.97438 * 8 6 5 10 10 N 1.29947 * 125.36243 * 180.02562 * 9 8 6 11 11 C 1.31587 * 117.13681 * 180.02562 * 10 9 8 12 12 C 1.50697 * 122.23144 * 179.97438 * 11 10 9 13 13 C 1.34659 * 115.54066 * 0.02562 * 11 10 9 14 14 S 1.76199 * 125.93338 * 179.97438 * 13 11 10 15 15 C 1.76204 * 100.00059 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00029 * 0.02562 * 15 14 13 17 17 C 1.38422 * 120.00018 * 180.02562 * 15 14 13 18 18 N 1.31817 * 120.00347 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00194 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47085 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47414 * 119.99911 * 19 17 15 22 22 H 1.48504 * 109.47396 * 239.99785 * 19 17 15 23 23 S 1.76139 * 125.36328 * 359.69605 * 9 8 6 24 24 C 1.53781 * 113.61413 * 208.47320 * 3 2 1 25 25 H 1.08995 * 109.47317 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46781 * 300.00325 * 1 2 3 27 27 H 1.09002 * 109.46817 * 60.00169 * 1 2 3 28 28 H 1.09002 * 112.84974 * 339.66626 * 3 2 1 29 29 H 1.08999 * 113.61060 * 203.67958 * 4 3 2 30 30 H 1.08997 * 113.61198 * 334.57751 * 4 3 2 31 31 H 1.08994 * 113.61814 * 270.88533 * 5 4 3 32 32 H 0.96998 * 120.00377 * 0.02562 * 8 6 5 33 33 H 1.09001 * 109.47416 * 90.02625 * 12 11 10 34 34 H 1.09002 * 109.47086 * 210.02206 * 12 11 10 35 35 H 1.08993 * 109.47309 * 330.02410 * 12 11 10 36 36 H 0.96999 * 120.00293 * 180.02562 * 18 17 15 37 37 H 1.09000 * 113.61578 * 25.34440 * 24 3 2 38 38 H 1.08997 * 113.61673 * 156.25409 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.7213 1.6652 1.3153 5 6 3.9897 1.0425 0.7084 6 6 5.2474 1.8135 1.0165 7 8 5.6915 2.5984 0.2055 8 7 5.8786 1.6305 2.1931 9 6 7.0382 2.3407 2.4768 10 7 7.7287 2.2460 3.5736 11 6 8.8045 2.9974 3.6723 12 6 9.6882 2.9793 4.8927 13 6 9.0624 3.7843 2.6104 14 16 10.4222 4.8935 2.4515 15 6 10.0987 5.5463 0.8472 16 1 9.2361 5.2099 0.2911 17 6 10.9501 6.4903 0.2994 18 7 12.0033 6.9006 0.9778 19 14 10.6068 7.1829 -1.4010 20 1 9.3732 6.5632 -1.9482 21 1 10.4235 8.6537 -1.3088 22 1 11.7512 6.8821 -2.2984 23 16 7.8087 3.5054 1.4034 24 6 3.3923 1.3643 -0.6718 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.3220 2.0752 -0.3490 29 1 2.8017 2.7383 1.4887 30 1 2.3397 1.1230 2.1804 31 1 4.0881 -0.0253 0.9033 32 1 5.5237 1.0024 2.8415 33 1 10.4645 2.2243 4.7681 34 1 10.1506 3.9580 5.0211 35 1 9.0890 2.7425 5.7718 36 1 12.5997 7.5624 0.5941 37 1 3.5525 0.5792 -1.4107 38 1 3.6563 2.3552 -1.0414 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599247617.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:29 Heat of formation + Delta-G solvation = -22.210297 kcal Electronic energy + Delta-G solvation = -22435.067348 eV Core-core repulsion = 18917.374577 eV Total energy + Delta-G solvation = -3517.692770 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.78625 -39.11359 -38.35390 -35.93708 -34.69542 -32.80695 -30.55774 -27.68063 -27.06723 -26.31508 -26.02626 -25.74430 -23.33594 -21.27259 -20.29309 -19.37584 -18.22136 -17.64828 -17.10337 -16.38814 -16.04929 -15.77229 -15.59198 -15.24349 -15.09403 -14.65707 -14.22869 -13.96093 -13.68853 -13.18325 -12.84667 -12.68082 -12.59668 -12.27404 -12.04438 -11.89279 -11.76629 -11.35744 -11.27246 -11.10270 -11.05734 -10.84195 -10.62381 -10.54684 -10.23437 -9.96350 -9.72723 -9.52171 -9.04048 -8.72776 -8.63260 -7.78033 -6.58852 -6.48192 -4.26321 1.40843 1.91459 2.47579 2.56722 2.94163 3.09214 3.10150 3.19136 3.25678 3.38477 3.64059 3.99202 4.10472 4.24190 4.36877 4.56084 4.83692 4.88274 4.95442 4.98721 5.04466 5.05434 5.25522 5.26745 5.40785 5.44244 5.64766 5.73316 5.87637 5.99759 6.17991 6.24773 6.47646 6.52362 6.81102 6.99984 7.22351 7.34777 8.02648 8.06068 8.54536 8.89903 10.47006 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.003153 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.837636 B = 8877.239008 C =10504.384870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.369 6.369 3 C 0.062 3.938 4 C -0.143 4.143 5 C -0.121 4.121 6 C 0.513 3.487 7 O -0.505 6.505 8 N -0.614 5.614 9 C 0.188 3.812 10 N -0.477 5.477 11 C 0.019 3.981 12 C -0.061 4.061 13 C -0.252 4.252 14 S 0.146 5.854 15 C -0.555 4.555 16 H 0.089 0.911 17 C 0.081 3.919 18 N -0.863 5.863 19 Si 0.924 3.076 20 H -0.264 1.264 21 H -0.275 1.275 22 H -0.275 1.275 23 S 0.199 5.801 24 C -0.115 4.115 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.414 0.586 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.276 0.724 37 H 0.084 0.916 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.868 -11.103 0.434 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C 0.004 3.996 4 C -0.181 4.181 5 C -0.143 4.143 6 C 0.299 3.701 7 O -0.380 6.380 8 N -0.262 5.262 9 C -0.183 4.183 10 N -0.198 5.198 11 C -0.123 4.123 12 C -0.121 4.121 13 C -0.489 4.489 14 S 0.397 5.603 15 C -0.703 4.703 16 H 0.107 0.893 17 C -0.130 4.130 18 N -0.496 5.496 19 Si 0.749 3.251 20 H -0.188 1.188 21 H -0.200 1.200 22 H -0.200 1.200 23 S 0.443 5.557 24 C -0.153 4.153 25 H 0.105 0.895 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.140 0.860 32 H 0.252 0.748 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.655 -10.173 -0.082 20.376 hybrid contribution -1.035 -0.111 -0.645 1.224 sum -18.690 -10.283 -0.727 21.344 Atomic orbital electron populations 1.22827 0.80758 1.02874 1.00161 1.87882 1.19865 1.26455 1.94550 1.23059 0.94840 0.85359 0.96357 1.23439 0.94123 1.01965 0.98568 1.22659 0.90703 1.00958 0.99956 1.20802 0.85488 0.83378 0.80438 1.90691 1.65286 1.35736 1.46241 1.42484 1.22645 1.41877 1.19244 1.23840 0.95066 1.03071 0.96340 1.65823 1.07316 1.25217 1.21439 1.19034 0.96099 0.99196 0.97967 1.20115 0.96764 1.02255 0.92936 1.28766 1.08841 1.09511 1.01737 1.83069 1.19504 1.36422 1.21337 1.23299 1.15517 1.28936 1.02592 0.89292 1.25029 0.93834 0.94766 0.99329 1.70025 1.12726 1.29112 1.37779 0.85989 0.79161 0.78837 0.81128 1.18775 1.20023 1.20015 1.85837 1.16633 1.37086 1.16141 1.23144 0.92400 1.04494 0.95235 0.89506 0.93867 0.93836 0.90091 0.88475 0.89729 0.86037 0.74836 0.91887 0.91055 0.91957 0.91394 0.89728 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.85 101.05 1.10 1.27 16 2 O -0.37 -3.16 10.64 -35.23 -0.37 -3.54 16 3 C 0.06 0.49 4.36 -25.92 -0.11 0.38 16 4 C -0.14 -1.16 7.46 -25.92 -0.19 -1.35 16 5 C -0.12 -1.19 4.09 -90.95 -0.37 -1.56 16 6 C 0.51 7.27 7.32 -10.99 -0.08 7.19 16 7 O -0.51 -9.13 13.42 5.55 0.07 -9.05 16 8 N -0.61 -9.04 5.40 -11.78 -0.06 -9.10 16 9 C 0.19 3.65 8.40 -87.18 -0.73 2.92 16 10 N -0.48 -9.69 10.55 -9.78 -0.10 -9.79 16 11 C 0.02 0.41 6.73 -83.97 -0.57 -0.15 16 12 C -0.06 -1.09 10.02 36.00 0.36 -0.72 16 13 C -0.25 -5.88 6.67 29.47 0.20 -5.69 16 14 S 0.15 3.71 20.74 -107.50 -2.23 1.48 16 15 C -0.55 -15.23 9.26 30.80 0.29 -14.94 16 16 H 0.09 2.43 5.97 -52.49 -0.31 2.12 16 17 C 0.08 2.19 5.49 -17.49 -0.10 2.09 16 18 N -0.86 -23.92 13.22 55.47 0.73 -23.18 16 19 Si 0.92 20.80 29.55 -169.99 -5.02 15.78 16 20 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 S 0.20 4.44 18.35 -107.50 -1.97 2.47 16 24 C -0.12 -1.09 7.24 -25.91 -0.19 -1.28 16 25 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.08 0.54 7.88 -51.93 -0.41 0.13 16 29 H 0.10 0.82 8.09 -51.93 -0.42 0.40 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.41 4.70 8.82 -40.82 -0.36 4.34 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.26 7.37 -51.93 -0.38 0.88 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.28 7.08 8.32 -40.82 -0.34 6.74 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.11 1.17 7.43 -51.93 -0.39 0.78 16 LS Contribution 350.11 15.07 5.28 5.28 Total: -1.00 -32.20 350.11 -8.87 -41.07 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -4.79 Total: 0.44 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -0.40 Total: -11.85 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.57 Total: -42.07 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.30 Total: -12.59 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 8.15 SS G_CDS: -4.20 Total: 3.95 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.20 -8.87 -41.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599247617.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.857 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds