Wall clock time and date at job start Tue Mar 31 2020 14:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00258 * 2 1 4 4 C 1.53785 * 113.69063 * 110.93650 * 3 2 1 5 5 C 1.53777 * 87.08241 * 89.12535 * 4 3 2 6 6 C 1.50703 * 113.61172 * 139.97748 * 5 4 3 7 7 O 1.21287 * 120.00203 * 262.50369 * 6 5 4 8 8 N 1.34774 * 119.99476 * 82.50631 * 6 5 4 9 9 C 1.38902 * 119.99627 * 179.97438 * 8 6 5 10 10 N 1.29947 * 125.36243 * 180.02562 * 9 8 6 11 11 C 1.31587 * 117.13681 * 180.02562 * 10 9 8 12 12 C 1.50697 * 122.23144 * 179.97438 * 11 10 9 13 13 C 1.34659 * 115.54066 * 0.02562 * 11 10 9 14 14 S 1.76199 * 125.93338 * 179.97438 * 13 11 10 15 15 C 1.76204 * 100.00059 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00029 * 0.02562 * 15 14 13 17 17 C 1.38422 * 120.00018 * 180.02562 * 15 14 13 18 18 N 1.31817 * 120.00347 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00194 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47085 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47414 * 119.99911 * 19 17 15 22 22 H 1.48504 * 109.47396 * 239.99785 * 19 17 15 23 23 S 1.76139 * 125.36328 * 359.69605 * 9 8 6 24 24 C 1.53781 * 113.61413 * 208.47320 * 3 2 1 25 25 H 1.08995 * 109.47317 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46781 * 300.00325 * 1 2 3 27 27 H 1.09002 * 109.46817 * 60.00169 * 1 2 3 28 28 H 1.09002 * 112.84974 * 339.66626 * 3 2 1 29 29 H 1.08999 * 113.61060 * 203.67958 * 4 3 2 30 30 H 1.08997 * 113.61198 * 334.57751 * 4 3 2 31 31 H 1.08994 * 113.61814 * 270.88533 * 5 4 3 32 32 H 0.96998 * 120.00377 * 0.02562 * 8 6 5 33 33 H 1.09001 * 109.47416 * 90.02625 * 12 11 10 34 34 H 1.09002 * 109.47086 * 210.02206 * 12 11 10 35 35 H 1.08993 * 109.47309 * 330.02410 * 12 11 10 36 36 H 0.96999 * 120.00293 * 180.02562 * 18 17 15 37 37 H 1.09000 * 113.61578 * 25.34440 * 24 3 2 38 38 H 1.08997 * 113.61673 * 156.25409 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.7213 1.6652 1.3153 5 6 3.9897 1.0425 0.7084 6 6 5.2474 1.8135 1.0165 7 8 5.6915 2.5984 0.2055 8 7 5.8786 1.6305 2.1931 9 6 7.0382 2.3407 2.4768 10 7 7.7287 2.2460 3.5736 11 6 8.8045 2.9974 3.6723 12 6 9.6882 2.9793 4.8927 13 6 9.0624 3.7843 2.6104 14 16 10.4222 4.8935 2.4515 15 6 10.0987 5.5463 0.8472 16 1 9.2361 5.2099 0.2911 17 6 10.9501 6.4903 0.2994 18 7 12.0033 6.9006 0.9778 19 14 10.6068 7.1829 -1.4010 20 1 9.3732 6.5632 -1.9482 21 1 10.4235 8.6537 -1.3088 22 1 11.7512 6.8821 -2.2984 23 16 7.8087 3.5054 1.4034 24 6 3.3923 1.3643 -0.6718 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.3220 2.0752 -0.3490 29 1 2.8017 2.7383 1.4887 30 1 2.3397 1.1230 2.1804 31 1 4.0881 -0.0253 0.9033 32 1 5.5237 1.0024 2.8415 33 1 10.4645 2.2243 4.7681 34 1 10.1506 3.9580 5.0211 35 1 9.0890 2.7425 5.7718 36 1 12.5997 7.5624 0.5941 37 1 3.5525 0.5792 -1.4107 38 1 3.6563 2.3552 -1.0414 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599247617.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:28 Heat of formation + Delta-G solvation = -43.380806 kcal Electronic energy + Delta-G solvation = -22435.985370 eV Core-core repulsion = 18917.374577 eV Total energy + Delta-G solvation = -3518.610793 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.86183 -40.41109 -39.58541 -36.63996 -36.10614 -34.81563 -32.09600 -28.85297 -28.32294 -27.71222 -27.04888 -26.72798 -24.65999 -22.57630 -21.60241 -20.52842 -19.74354 -19.16474 -18.42991 -17.45180 -17.20879 -17.07379 -16.89681 -16.66709 -15.99065 -15.93912 -15.55880 -15.26219 -14.93636 -14.61280 -14.38110 -13.58261 -13.53231 -13.41037 -13.29583 -13.26860 -13.07424 -12.98073 -12.88208 -12.45014 -12.18296 -12.11867 -12.03492 -11.76692 -11.47636 -11.34337 -11.16526 -10.76536 -10.50040 -10.47051 -10.45383 -9.52651 -8.57757 -8.36641 -6.30011 -0.23395 0.22069 0.83101 1.18998 1.26751 1.32848 1.40976 1.53056 1.69591 2.01945 2.14454 2.69671 2.81280 3.09590 3.30097 3.47530 3.60010 3.70637 3.86093 4.17847 4.34609 4.43578 4.57571 4.62071 4.69921 4.72673 4.80834 4.84465 4.90641 4.96226 4.97568 5.01927 5.06563 5.17157 5.29802 5.47701 5.96685 6.02467 6.27422 6.79104 6.87053 6.87898 8.50236 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.003153 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.837636 B = 8877.239008 C =10504.384870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.386 6.386 3 C 0.071 3.929 4 C -0.135 4.135 5 C -0.114 4.114 6 C 0.515 3.485 7 O -0.541 6.541 8 N -0.603 5.603 9 C 0.226 3.774 10 N -0.484 5.484 11 C 0.038 3.962 12 C -0.062 4.062 13 C -0.283 4.283 14 S 0.098 5.902 15 C -0.574 4.574 16 H 0.080 0.920 17 C 0.034 3.966 18 N -0.896 5.896 19 Si 0.986 3.014 20 H -0.268 1.268 21 H -0.263 1.263 22 H -0.264 1.264 23 S 0.157 5.843 24 C -0.122 4.122 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.145 0.855 32 H 0.435 0.565 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.281 0.719 37 H 0.085 0.915 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.526 -12.843 0.709 25.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.305 6.305 3 C 0.013 3.987 4 C -0.173 4.173 5 C -0.135 4.135 6 C 0.303 3.697 7 O -0.416 6.416 8 N -0.254 5.254 9 C -0.147 4.147 10 N -0.206 5.206 11 C -0.104 4.104 12 C -0.122 4.122 13 C -0.518 4.518 14 S 0.345 5.655 15 C -0.723 4.723 16 H 0.098 0.902 17 C -0.173 4.173 18 N -0.530 5.530 19 Si 0.808 3.192 20 H -0.193 1.193 21 H -0.188 1.188 22 H -0.188 1.188 23 S 0.401 5.599 24 C -0.160 4.160 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.162 0.838 32 H 0.277 0.723 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.367 -11.962 0.215 23.621 hybrid contribution -0.501 0.171 -0.675 0.857 sum -20.867 -11.791 -0.459 23.973 Atomic orbital electron populations 1.23015 0.79274 1.03927 1.01017 1.87853 1.21513 1.26524 1.94592 1.22949 0.94299 0.85822 0.95629 1.23439 0.92586 1.01836 0.99426 1.22841 0.88546 1.01492 1.00597 1.21811 0.86006 0.82621 0.79254 1.90694 1.66277 1.37382 1.47293 1.42709 1.20938 1.41529 1.20217 1.24206 0.95130 1.00689 0.94641 1.66039 1.07551 1.25689 1.21349 1.19707 0.95724 0.96923 0.98036 1.20245 0.96922 1.02703 0.92287 1.28586 1.09185 1.11041 1.02987 1.82880 1.22079 1.39033 1.21490 1.23471 1.15621 1.29691 1.03478 0.90189 1.25893 0.93567 0.94915 1.02917 1.70101 1.13607 1.29934 1.39394 0.85074 0.78926 0.78523 0.76711 1.19262 1.18764 1.18841 1.86023 1.17575 1.38769 1.17511 1.23161 0.93876 1.03754 0.95184 0.88462 0.92869 0.93135 0.88603 0.88879 0.87867 0.83759 0.72326 0.90343 0.91355 0.89477 0.90925 0.89617 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.85 113.37 1.23 1.43 16 2 O -0.39 -5.41 10.64 -148.98 -1.58 -7.00 16 3 C 0.07 0.93 4.36 31.12 0.14 1.07 16 4 C -0.13 -1.76 7.46 31.12 0.23 -1.52 16 5 C -0.11 -1.92 4.09 -11.01 -0.04 -1.96 16 6 C 0.51 13.64 7.32 87.66 0.64 14.28 16 7 O -0.54 -19.27 13.42 -3.05 -0.04 -19.31 16 8 N -0.60 -16.27 5.40 -309.57 -1.67 -17.94 16 9 C 0.23 8.47 8.40 179.15 1.50 9.98 16 10 N -0.48 -18.80 10.55 -184.86 -1.95 -20.75 16 11 C 0.04 1.57 6.73 41.77 0.28 1.85 16 12 C -0.06 -2.12 10.02 71.24 0.71 -1.41 16 13 C -0.28 -13.46 6.67 67.00 0.45 -13.01 16 14 S 0.10 5.17 20.74 -56.49 -1.17 3.99 16 15 C -0.57 -32.78 9.26 67.86 0.63 -32.15 16 16 H 0.08 4.57 5.97 -2.91 -0.02 4.56 16 17 C 0.03 1.89 5.49 84.74 0.46 2.35 16 18 N -0.90 -51.04 13.22 21.59 0.29 -50.75 16 19 Si 0.99 43.48 29.55 68.60 2.03 45.51 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 22 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 23 S 0.16 7.09 18.35 -56.49 -1.04 6.05 16 24 C -0.12 -2.09 7.24 31.12 0.23 -1.87 16 25 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.10 0.99 7.88 -2.39 -0.02 0.97 16 29 H 0.09 1.33 8.09 -2.39 -0.02 1.31 16 30 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.44 8.32 8.82 -92.71 -0.82 7.50 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.07 2.40 7.37 -2.39 -0.02 2.38 16 35 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.28 14.73 8.32 -92.71 -0.77 13.96 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.10 1.96 7.43 -2.39 -0.02 1.94 16 Total: -1.00 -71.48 350.11 1.60 -69.87 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.29 Total: 11.30 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: 6.46 Total: -20.98 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -3.34 Total: -89.45 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -1.63 Total: -26.30 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 12.25 SS G_CDS: -2.21 Total: 10.05 kcal Total: -71.48 1.60 -69.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599247617.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.492 kcal (2) G-P(sol) polarization free energy of solvation -71.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds